data_8U57 # _model_server_result.job_id tmP7h78ePyl4q2Y8zi7ceQ _model_server_result.datetime_utc '2024-10-14 02:40:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u57 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 8U57 # _exptl.entry_id 8U57 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 152.235 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S,5S)-1,2-DITHIANE-4,5-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8U57 _cell.length_a 66.171 _cell.length_b 66.171 _cell.length_c 156.936 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8U57 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 97 A GLY 284 1_555 A N CSO 98 A CSO 285 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C GLY 97 A GLY 284 1_555 A N CSO 98 A CSO 285 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C CSO 98 A CSO 285 1_555 A N GLN 99 A GLN 286 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C CSO 98 A CSO 285 1_555 A N GLN 99 A GLN 286 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C4 H8 O2 S2' _chem_comp.formula_weight 152.235 _chem_comp.id D1D _chem_comp.mon_nstd_flag . _chem_comp.name (4S,5S)-1,2-DITHIANE-4,5-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 D1D sing 109 n n S1 S4 D1D sing 110 n n C1 C2 D1D sing 111 n n C1 H1C1 D1D sing 112 n n C1 H1C2 D1D sing 113 n n C2 O2 D1D sing 114 n n C2 C3 D1D sing 115 n n C2 H2 D1D sing 116 n n O2 HA D1D sing 117 n n C3 O3 D1D sing 118 n n C3 C4 D1D sing 119 n n C3 H3 D1D sing 120 n n O3 HB D1D sing 121 n n C4 S4 D1D sing 122 n n C4 H4C1 D1D sing 123 n n C4 H4C2 D1D sing 124 n n # _atom_sites.entry_id 8U57 _atom_sites.fract_transf_matrix[1][1] 0.015112 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015112 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006372 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8PF A 1 501 501 8PF LIG . C 2 8PF A 1 502 701 8PF LIG . D 2 8PF A 1 503 801 8PF LIG . E 3 D1D A 1 504 901 D1D D1D . F 2 8PF A 1 505 1 8PF LIG . G 4 HOH A 1 601 33 HOH HOH . G 4 HOH A 2 602 66 HOH HOH . G 4 HOH A 3 603 35 HOH HOH . G 4 HOH A 4 604 34 HOH HOH . G 4 HOH A 5 605 94 HOH HOH . G 4 HOH A 6 606 106 HOH HOH . G 4 HOH A 7 607 28 HOH HOH . G 4 HOH A 8 608 15 HOH HOH . G 4 HOH A 9 609 18 HOH HOH . G 4 HOH A 10 610 40 HOH HOH . G 4 HOH A 11 611 113 HOH HOH . G 4 HOH A 12 612 97 HOH HOH . G 4 HOH A 13 613 61 HOH HOH . G 4 HOH A 14 614 3 HOH HOH . G 4 HOH A 15 615 42 HOH HOH . G 4 HOH A 16 616 2 HOH HOH . G 4 HOH A 17 617 95 HOH HOH . G 4 HOH A 18 618 30 HOH HOH . G 4 HOH A 19 619 5 HOH HOH . G 4 HOH A 20 620 121 HOH HOH . G 4 HOH A 21 621 13 HOH HOH . G 4 HOH A 22 622 6 HOH HOH . G 4 HOH A 23 623 62 HOH HOH . G 4 HOH A 24 624 10 HOH HOH . G 4 HOH A 25 625 52 HOH HOH . G 4 HOH A 26 626 29 HOH HOH . G 4 HOH A 27 627 23 HOH HOH . G 4 HOH A 28 628 27 HOH HOH . G 4 HOH A 29 629 100 HOH HOH . G 4 HOH A 30 630 102 HOH HOH . G 4 HOH A 31 631 91 HOH HOH . G 4 HOH A 32 632 12 HOH HOH . G 4 HOH A 33 633 79 HOH HOH . G 4 HOH A 34 634 25 HOH HOH . G 4 HOH A 35 635 44 HOH HOH . G 4 HOH A 36 636 31 HOH HOH . G 4 HOH A 37 637 70 HOH HOH . G 4 HOH A 38 638 88 HOH HOH . G 4 HOH A 39 639 21 HOH HOH . G 4 HOH A 40 640 9 HOH HOH . G 4 HOH A 41 641 7 HOH HOH . G 4 HOH A 42 642 56 HOH HOH . G 4 HOH A 43 643 19 HOH HOH . G 4 HOH A 44 644 20 HOH HOH . G 4 HOH A 45 645 26 HOH HOH . G 4 HOH A 46 646 49 HOH HOH . G 4 HOH A 47 647 39 HOH HOH . G 4 HOH A 48 648 85 HOH HOH . G 4 HOH A 49 649 8 HOH HOH . G 4 HOH A 50 650 4 HOH HOH . G 4 HOH A 51 651 43 HOH HOH . G 4 HOH A 52 652 22 HOH HOH . G 4 HOH A 53 653 112 HOH HOH . G 4 HOH A 54 654 11 HOH HOH . G 4 HOH A 55 655 14 HOH HOH . G 4 HOH A 56 656 67 HOH HOH . G 4 HOH A 57 657 46 HOH HOH . G 4 HOH A 58 658 80 HOH HOH . G 4 HOH A 59 659 16 HOH HOH . G 4 HOH A 60 660 58 HOH HOH . G 4 HOH A 61 661 24 HOH HOH . G 4 HOH A 62 662 87 HOH HOH . G 4 HOH A 63 663 90 HOH HOH . G 4 HOH A 64 664 45 HOH HOH . G 4 HOH A 65 665 65 HOH HOH . G 4 HOH A 66 666 114 HOH HOH . G 4 HOH A 67 667 99 HOH HOH . G 4 HOH A 68 668 55 HOH HOH . G 4 HOH A 69 669 36 HOH HOH . G 4 HOH A 70 670 78 HOH HOH . G 4 HOH A 71 671 51 HOH HOH . G 4 HOH A 72 672 108 HOH HOH . G 4 HOH A 73 673 53 HOH HOH . G 4 HOH A 74 674 47 HOH HOH . G 4 HOH A 75 675 48 HOH HOH . G 4 HOH A 76 676 93 HOH HOH . G 4 HOH A 77 677 72 HOH HOH . G 4 HOH A 78 678 69 HOH HOH . G 4 HOH A 79 679 57 HOH HOH . G 4 HOH A 80 680 32 HOH HOH . G 4 HOH A 81 681 110 HOH HOH . G 4 HOH A 82 682 59 HOH HOH . G 4 HOH A 83 683 71 HOH HOH . G 4 HOH A 84 684 75 HOH HOH . G 4 HOH A 85 685 96 HOH HOH . G 4 HOH A 86 686 104 HOH HOH . G 4 HOH A 87 687 117 HOH HOH . G 4 HOH A 88 688 60 HOH HOH . G 4 HOH A 89 689 63 HOH HOH . G 4 HOH A 90 690 41 HOH HOH . G 4 HOH A 91 691 115 HOH HOH . G 4 HOH A 92 692 37 HOH HOH . G 4 HOH A 93 693 92 HOH HOH . G 4 HOH A 94 694 82 HOH HOH . G 4 HOH A 95 695 125 HOH HOH . G 4 HOH A 96 696 1 HOH HOH . G 4 HOH A 97 697 50 HOH HOH . G 4 HOH A 98 698 103 HOH HOH . G 4 HOH A 99 699 109 HOH HOH . G 4 HOH A 100 700 74 HOH HOH . G 4 HOH A 101 701 101 HOH HOH . G 4 HOH A 102 702 77 HOH HOH . G 4 HOH A 103 703 123 HOH HOH . G 4 HOH A 104 704 124 HOH HOH . G 4 HOH A 105 705 17 HOH HOH . G 4 HOH A 106 706 120 HOH HOH . G 4 HOH A 107 707 118 HOH HOH . G 4 HOH A 108 708 122 HOH HOH . G 4 HOH A 109 709 89 HOH HOH . G 4 HOH A 110 710 76 HOH HOH . G 4 HOH A 111 711 68 HOH HOH . G 4 HOH A 112 712 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 D1D . . . E 3 -14.981 -5.672 31.837 0.88 54.66 ? S1 D1D 504 A 1 HETATM 2 C C1 D1D . . . E 3 -13.623 -6.593 32.011 0.88 51.23 ? C1 D1D 504 A 1 HETATM 3 C C2 D1D . . . E 3 -13.838 -7.862 33.053 0.88 60.02 ? C2 D1D 504 A 1 HETATM 4 O O2 D1D . . . E 3 -13.152 -7.711 34.015 0.88 55.52 ? O2 D1D 504 A 1 HETATM 5 C C3 D1D . . . E 3 -15.574 -8.023 33.582 0.88 60.82 ? C3 D1D 504 A 1 HETATM 6 O O3 D1D . . . E 3 -15.706 -9.039 34.223 0.88 78.03 ? O3 D1D 504 A 1 HETATM 7 C C4 D1D . . . E 3 -16.568 -8.061 32.305 0.88 69.3 ? C4 D1D 504 A 1 HETATM 8 S S4 D1D . . . E 3 -16.45 -6.655 31.396 0.88 55.59 ? S4 D1D 504 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #