data_8U57 # _model_server_result.job_id gXI8AATEHevx3Lwje6Vodw _model_server_result.datetime_utc '2024-11-24 23:32:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u57 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 8U57 # _exptl.entry_id 8U57 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'pentadecafluorooctanoic acid' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8U57 _cell.length_a 66.171 _cell.length_b 66.171 _cell.length_c 156.936 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8U57 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 97 A GLY 284 1_555 A N CSO 98 A CSO 285 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C GLY 97 A GLY 284 1_555 A N CSO 98 A CSO 285 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C CSO 98 A CSO 285 1_555 A N GLN 99 A GLN 286 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C CSO 98 A CSO 285 1_555 A N GLN 99 A GLN 286 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C8 H F15 O2' _chem_comp.formula_weight 414.068 _chem_comp.id 8PF _chem_comp.mon_nstd_flag . _chem_comp.name 'pentadecafluorooctanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O09 C07 8PF doub 1 n n O08 C07 8PF sing 2 n n C07 C04 8PF sing 3 n n F06 C04 8PF sing 4 n n C04 F05 8PF sing 5 n n C04 C02 8PF sing 6 n n F01 C02 8PF sing 7 n n C02 F03 8PF sing 8 n n C02 C10 8PF sing 9 n n F11 C10 8PF sing 10 n n C10 F12 8PF sing 11 n n C10 C13 8PF sing 12 n n F14 C13 8PF sing 13 n n C13 F15 8PF sing 14 n n C13 C16 8PF sing 15 n n F17 C16 8PF sing 16 n n C16 F18 8PF sing 17 n n C16 C19 8PF sing 18 n n F24 C22 8PF sing 19 n n C19 C22 8PF sing 20 n n C19 F21 8PF sing 21 n n C19 F20 8PF sing 22 n n C22 F25 8PF sing 23 n n C22 F23 8PF sing 24 n n O08 H1 8PF sing 25 n n # _atom_sites.entry_id 8U57 _atom_sites.fract_transf_matrix[1][1] 0.015112 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015112 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006372 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8PF A 1 501 501 8PF LIG . C 2 8PF A 1 502 701 8PF LIG . D 2 8PF A 1 503 801 8PF LIG . E 3 D1D A 1 504 901 D1D D1D . F 2 8PF A 1 505 1 8PF LIG . G 4 HOH A 1 601 33 HOH HOH . G 4 HOH A 2 602 66 HOH HOH . G 4 HOH A 3 603 35 HOH HOH . G 4 HOH A 4 604 34 HOH HOH . G 4 HOH A 5 605 94 HOH HOH . G 4 HOH A 6 606 106 HOH HOH . G 4 HOH A 7 607 28 HOH HOH . G 4 HOH A 8 608 15 HOH HOH . G 4 HOH A 9 609 18 HOH HOH . G 4 HOH A 10 610 40 HOH HOH . G 4 HOH A 11 611 113 HOH HOH . G 4 HOH A 12 612 97 HOH HOH . G 4 HOH A 13 613 61 HOH HOH . G 4 HOH A 14 614 3 HOH HOH . G 4 HOH A 15 615 42 HOH HOH . G 4 HOH A 16 616 2 HOH HOH . G 4 HOH A 17 617 95 HOH HOH . G 4 HOH A 18 618 30 HOH HOH . G 4 HOH A 19 619 5 HOH HOH . G 4 HOH A 20 620 121 HOH HOH . G 4 HOH A 21 621 13 HOH HOH . G 4 HOH A 22 622 6 HOH HOH . G 4 HOH A 23 623 62 HOH HOH . G 4 HOH A 24 624 10 HOH HOH . G 4 HOH A 25 625 52 HOH HOH . G 4 HOH A 26 626 29 HOH HOH . G 4 HOH A 27 627 23 HOH HOH . G 4 HOH A 28 628 27 HOH HOH . G 4 HOH A 29 629 100 HOH HOH . G 4 HOH A 30 630 102 HOH HOH . G 4 HOH A 31 631 91 HOH HOH . G 4 HOH A 32 632 12 HOH HOH . G 4 HOH A 33 633 79 HOH HOH . G 4 HOH A 34 634 25 HOH HOH . G 4 HOH A 35 635 44 HOH HOH . G 4 HOH A 36 636 31 HOH HOH . G 4 HOH A 37 637 70 HOH HOH . G 4 HOH A 38 638 88 HOH HOH . G 4 HOH A 39 639 21 HOH HOH . G 4 HOH A 40 640 9 HOH HOH . G 4 HOH A 41 641 7 HOH HOH . G 4 HOH A 42 642 56 HOH HOH . G 4 HOH A 43 643 19 HOH HOH . G 4 HOH A 44 644 20 HOH HOH . G 4 HOH A 45 645 26 HOH HOH . G 4 HOH A 46 646 49 HOH HOH . G 4 HOH A 47 647 39 HOH HOH . G 4 HOH A 48 648 85 HOH HOH . G 4 HOH A 49 649 8 HOH HOH . G 4 HOH A 50 650 4 HOH HOH . G 4 HOH A 51 651 43 HOH HOH . G 4 HOH A 52 652 22 HOH HOH . G 4 HOH A 53 653 112 HOH HOH . G 4 HOH A 54 654 11 HOH HOH . G 4 HOH A 55 655 14 HOH HOH . G 4 HOH A 56 656 67 HOH HOH . G 4 HOH A 57 657 46 HOH HOH . G 4 HOH A 58 658 80 HOH HOH . G 4 HOH A 59 659 16 HOH HOH . G 4 HOH A 60 660 58 HOH HOH . G 4 HOH A 61 661 24 HOH HOH . G 4 HOH A 62 662 87 HOH HOH . G 4 HOH A 63 663 90 HOH HOH . G 4 HOH A 64 664 45 HOH HOH . G 4 HOH A 65 665 65 HOH HOH . G 4 HOH A 66 666 114 HOH HOH . G 4 HOH A 67 667 99 HOH HOH . G 4 HOH A 68 668 55 HOH HOH . G 4 HOH A 69 669 36 HOH HOH . G 4 HOH A 70 670 78 HOH HOH . G 4 HOH A 71 671 51 HOH HOH . G 4 HOH A 72 672 108 HOH HOH . G 4 HOH A 73 673 53 HOH HOH . G 4 HOH A 74 674 47 HOH HOH . G 4 HOH A 75 675 48 HOH HOH . G 4 HOH A 76 676 93 HOH HOH . G 4 HOH A 77 677 72 HOH HOH . G 4 HOH A 78 678 69 HOH HOH . G 4 HOH A 79 679 57 HOH HOH . G 4 HOH A 80 680 32 HOH HOH . G 4 HOH A 81 681 110 HOH HOH . G 4 HOH A 82 682 59 HOH HOH . G 4 HOH A 83 683 71 HOH HOH . G 4 HOH A 84 684 75 HOH HOH . G 4 HOH A 85 685 96 HOH HOH . G 4 HOH A 86 686 104 HOH HOH . G 4 HOH A 87 687 117 HOH HOH . G 4 HOH A 88 688 60 HOH HOH . G 4 HOH A 89 689 63 HOH HOH . G 4 HOH A 90 690 41 HOH HOH . G 4 HOH A 91 691 115 HOH HOH . G 4 HOH A 92 692 37 HOH HOH . G 4 HOH A 93 693 92 HOH HOH . G 4 HOH A 94 694 82 HOH HOH . G 4 HOH A 95 695 125 HOH HOH . G 4 HOH A 96 696 1 HOH HOH . G 4 HOH A 97 697 50 HOH HOH . G 4 HOH A 98 698 103 HOH HOH . G 4 HOH A 99 699 109 HOH HOH . G 4 HOH A 100 700 74 HOH HOH . G 4 HOH A 101 701 101 HOH HOH . G 4 HOH A 102 702 77 HOH HOH . G 4 HOH A 103 703 123 HOH HOH . G 4 HOH A 104 704 124 HOH HOH . G 4 HOH A 105 705 17 HOH HOH . G 4 HOH A 106 706 120 HOH HOH . G 4 HOH A 107 707 118 HOH HOH . G 4 HOH A 108 708 122 HOH HOH . G 4 HOH A 109 709 89 HOH HOH . G 4 HOH A 110 710 76 HOH HOH . G 4 HOH A 111 711 68 HOH HOH . G 4 HOH A 112 712 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 8PF . B . F 2 -13.268 9.035 37.505 0.51 56.57 ? C13 8PF 505 A 1 HETATM 2 C C16 8PF . B . F 2 -12.308 8.158 36.698 0.51 60.53 ? C16 8PF 505 A 1 HETATM 3 C C19 8PF . B . F 2 -11.176 7.639 37.585 0.51 55.57 ? C19 8PF 505 A 1 HETATM 4 C C10 8PF . B . F 2 -12.817 10.497 37.487 0.51 64.37 ? C10 8PF 505 A 1 HETATM 5 C C22 8PF . B . F 2 -10.745 6.256 37.113 0.51 57.13 ? C22 8PF 505 A 1 HETATM 6 F F01 8PF . B . F 2 -14.868 11.526 38.06 0.51 69.17 ? F01 8PF 505 A 1 HETATM 7 C C02 8PF . B . F 2 -13.608 11.289 38.526 0.51 63.26 ? C02 8PF 505 A 1 HETATM 8 F F03 8PF . B . F 2 -13.679 10.575 39.687 0.51 66.37 ? F03 8PF 505 A 1 HETATM 9 C C04 8PF . B . F 2 -12.898 12.616 38.792 0.51 69.89 ? C04 8PF 505 A 1 HETATM 10 F F05 8PF . B . F 2 -11.797 12.39 39.567 0.51 70.43 ? F05 8PF 505 A 1 HETATM 11 F F06 8PF . B . F 2 -12.512 13.174 37.607 0.51 67.11 ? F06 8PF 505 A 1 HETATM 12 C C07 8PF . B . F 2 -13.842 13.568 39.522 0.51 72.12 ? C07 8PF 505 A 1 HETATM 13 O O08 8PF . B . F 2 -13.399 14.635 40.022 0.51 70.65 ? O08 8PF 505 A 1 HETATM 14 O O09 8PF . B . F 2 -15.065 13.289 39.622 0.51 68.96 ? O09 8PF 505 A 1 HETATM 15 F F11 8PF . B . F 2 -13.046 11.03 36.251 0.51 64.44 ? F11 8PF 505 A 1 HETATM 16 F F12 8PF . B . F 2 -11.488 10.591 37.785 0.51 61.09 ? F12 8PF 505 A 1 HETATM 17 F F14 8PF . B . F 2 -13.34 8.595 38.794 0.51 62.08 ? F14 8PF 505 A 1 HETATM 18 F F15 8PF . B . F 2 -14.51 8.954 36.943 0.51 65.57 ? F15 8PF 505 A 1 HETATM 19 F F17 8PF . B . F 2 -12.989 7.092 36.182 0.51 55.9 ? F17 8PF 505 A 1 HETATM 20 F F18 8PF . B . F 2 -11.779 8.883 35.67 0.51 62.88 ? F18 8PF 505 A 1 HETATM 21 F F20 8PF . B . F 2 -11.59 7.558 38.882 0.51 60.52 ? F20 8PF 505 A 1 HETATM 22 F F21 8PF . B . F 2 -10.118 8.495 37.5 0.51 57.55 ? F21 8PF 505 A 1 HETATM 23 F F23 8PF . B . F 2 -9.538 5.943 37.669 0.51 64.13 ? F23 8PF 505 A 1 HETATM 24 F F24 8PF . B . F 2 -10.642 6.247 35.753 0.51 45.83 ? F24 8PF 505 A 1 HETATM 25 F F25 8PF . B . F 2 -11.676 5.343 37.511 0.51 59.78 ? F25 8PF 505 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 25 #