data_8U59 # _model_server_result.job_id vMZfQybtkBORuqZkmhozFg _model_server_result.datetime_utc '2025-01-11 23:49:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u59 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":202}' # _entry.id 8U59 # _exptl.entry_id 8U59 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 125.83 _cell.angle_gamma 90 _cell.entry_id 8U59 _cell.length_a 115.518 _cell.length_b 64.655 _cell.length_c 74.441 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8U59 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F 1 1 B,D,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 A CYS 30 1_555 A SG CYS 33 A CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? disulf ? disulf2 B SG CYS 30 B CYS 30 1_555 B SG CYS 33 B CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc1 B O ALA 1 B ALA 1 1_555 E CU CU . B CU 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? metalc ? metalc2 B NE2 HIS 41 B HIS 41 1_555 E CU CU . B CU 202 4_546 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8U59 _atom_sites.fract_transf_matrix[1][1] 0.008657 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006251 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015467 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01657 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 5V9 A 1 201 201 5V9 CP3 . D 3 SW0 B 1 201 201 SW0 CP5 . E 4 CU B 1 202 1 CU CU . F 5 HOH A 1 301 125 HOH HOH . F 5 HOH A 2 302 64 HOH HOH . F 5 HOH A 3 303 184 HOH HOH . F 5 HOH A 4 304 136 HOH HOH . F 5 HOH A 5 305 67 HOH HOH . F 5 HOH A 6 306 107 HOH HOH . F 5 HOH A 7 307 58 HOH HOH . F 5 HOH A 8 308 130 HOH HOH . F 5 HOH A 9 309 195 HOH HOH . F 5 HOH A 10 310 61 HOH HOH . F 5 HOH A 11 311 68 HOH HOH . F 5 HOH A 12 312 18 HOH HOH . F 5 HOH A 13 313 140 HOH HOH . F 5 HOH A 14 314 176 HOH HOH . F 5 HOH A 15 315 1 HOH HOH . F 5 HOH A 16 316 17 HOH HOH . F 5 HOH A 17 317 10 HOH HOH . F 5 HOH A 18 318 183 HOH HOH . F 5 HOH A 19 319 164 HOH HOH . F 5 HOH A 20 320 239 HOH HOH . F 5 HOH A 21 321 122 HOH HOH . F 5 HOH A 22 322 81 HOH HOH . F 5 HOH A 23 323 92 HOH HOH . F 5 HOH A 24 324 71 HOH HOH . F 5 HOH A 25 325 59 HOH HOH . F 5 HOH A 26 326 89 HOH HOH . F 5 HOH A 27 327 100 HOH HOH . F 5 HOH A 28 328 222 HOH HOH . F 5 HOH A 29 329 7 HOH HOH . F 5 HOH A 30 330 151 HOH HOH . F 5 HOH A 31 331 13 HOH HOH . F 5 HOH A 32 332 85 HOH HOH . F 5 HOH A 33 333 4 HOH HOH . F 5 HOH A 34 334 27 HOH HOH . F 5 HOH A 35 335 172 HOH HOH . F 5 HOH A 36 336 36 HOH HOH . F 5 HOH A 37 337 2 HOH HOH . F 5 HOH A 38 338 137 HOH HOH . F 5 HOH A 39 339 28 HOH HOH . F 5 HOH A 40 340 3 HOH HOH . F 5 HOH A 41 341 22 HOH HOH . F 5 HOH A 42 342 193 HOH HOH . F 5 HOH A 43 343 135 HOH HOH . F 5 HOH A 44 344 57 HOH HOH . F 5 HOH A 45 345 155 HOH HOH . F 5 HOH A 46 346 131 HOH HOH . F 5 HOH A 47 347 46 HOH HOH . F 5 HOH A 48 348 25 HOH HOH . F 5 HOH A 49 349 19 HOH HOH . F 5 HOH A 50 350 217 HOH HOH . F 5 HOH A 51 351 34 HOH HOH . F 5 HOH A 52 352 218 HOH HOH . F 5 HOH A 53 353 189 HOH HOH . F 5 HOH A 54 354 75 HOH HOH . F 5 HOH A 55 355 254 HOH HOH . F 5 HOH A 56 356 56 HOH HOH . F 5 HOH A 57 357 50 HOH HOH . F 5 HOH A 58 358 156 HOH HOH . F 5 HOH A 59 359 220 HOH HOH . F 5 HOH A 60 360 74 HOH HOH . F 5 HOH A 61 361 51 HOH HOH . F 5 HOH A 62 362 29 HOH HOH . F 5 HOH A 63 363 316 HOH HOH . F 5 HOH A 64 364 35 HOH HOH . F 5 HOH A 65 365 99 HOH HOH . F 5 HOH A 66 366 323 HOH HOH . F 5 HOH A 67 367 53 HOH HOH . F 5 HOH A 68 368 206 HOH HOH . F 5 HOH A 69 369 159 HOH HOH . F 5 HOH A 70 370 16 HOH HOH . F 5 HOH A 71 371 169 HOH HOH . F 5 HOH A 72 372 191 HOH HOH . F 5 HOH A 73 373 21 HOH HOH . F 5 HOH A 74 374 310 HOH HOH . F 5 HOH A 75 375 98 HOH HOH . F 5 HOH A 76 376 121 HOH HOH . F 5 HOH A 77 377 223 HOH HOH . F 5 HOH A 78 378 324 HOH HOH . F 5 HOH A 79 379 12 HOH HOH . F 5 HOH A 80 380 283 HOH HOH . F 5 HOH A 81 381 198 HOH HOH . F 5 HOH A 82 382 97 HOH HOH . F 5 HOH A 83 383 219 HOH HOH . F 5 HOH A 84 384 171 HOH HOH . F 5 HOH A 85 385 87 HOH HOH . F 5 HOH A 86 386 30 HOH HOH . F 5 HOH A 87 387 149 HOH HOH . F 5 HOH A 88 388 9 HOH HOH . F 5 HOH A 89 389 47 HOH HOH . F 5 HOH A 90 390 63 HOH HOH . F 5 HOH A 91 391 277 HOH HOH . F 5 HOH A 92 392 44 HOH HOH . F 5 HOH A 93 393 163 HOH HOH . F 5 HOH A 94 394 72 HOH HOH . F 5 HOH A 95 395 14 HOH HOH . F 5 HOH A 96 396 148 HOH HOH . F 5 HOH A 97 397 197 HOH HOH . F 5 HOH A 98 398 272 HOH HOH . F 5 HOH A 99 399 33 HOH HOH . F 5 HOH A 100 400 214 HOH HOH . F 5 HOH A 101 401 203 HOH HOH . F 5 HOH A 102 402 147 HOH HOH . F 5 HOH A 103 403 127 HOH HOH . F 5 HOH A 104 404 308 HOH HOH . F 5 HOH A 105 405 112 HOH HOH . F 5 HOH A 106 406 79 HOH HOH . F 5 HOH A 107 407 40 HOH HOH . F 5 HOH A 108 408 204 HOH HOH . F 5 HOH A 109 409 69 HOH HOH . F 5 HOH A 110 410 306 HOH HOH . F 5 HOH A 111 411 266 HOH HOH . F 5 HOH A 112 412 54 HOH HOH . F 5 HOH A 113 413 267 HOH HOH . F 5 HOH A 114 414 66 HOH HOH . F 5 HOH A 115 415 232 HOH HOH . F 5 HOH A 116 416 260 HOH HOH . F 5 HOH A 117 417 313 HOH HOH . F 5 HOH A 118 418 302 HOH HOH . F 5 HOH A 119 419 144 HOH HOH . F 5 HOH A 120 420 116 HOH HOH . F 5 HOH A 121 421 105 HOH HOH . F 5 HOH A 122 422 263 HOH HOH . F 5 HOH A 123 423 209 HOH HOH . F 5 HOH A 124 424 278 HOH HOH . F 5 HOH A 125 425 226 HOH HOH . F 5 HOH A 126 426 185 HOH HOH . F 5 HOH A 127 427 270 HOH HOH . F 5 HOH A 128 428 227 HOH HOH . F 5 HOH A 129 429 93 HOH HOH . F 5 HOH A 130 430 187 HOH HOH . F 5 HOH A 131 431 295 HOH HOH . F 5 HOH A 132 432 288 HOH HOH . F 5 HOH A 133 433 186 HOH HOH . F 5 HOH A 134 434 190 HOH HOH . F 5 HOH A 135 435 73 HOH HOH . F 5 HOH A 136 436 269 HOH HOH . F 5 HOH A 137 437 221 HOH HOH . F 5 HOH A 138 438 246 HOH HOH . F 5 HOH A 139 439 180 HOH HOH . F 5 HOH A 140 440 327 HOH HOH . F 5 HOH A 141 441 252 HOH HOH . F 5 HOH A 142 442 194 HOH HOH . F 5 HOH A 143 443 258 HOH HOH . F 5 HOH A 144 444 82 HOH HOH . F 5 HOH A 145 445 284 HOH HOH . F 5 HOH A 146 446 315 HOH HOH . F 5 HOH A 147 447 162 HOH HOH . F 5 HOH A 148 448 117 HOH HOH . F 5 HOH A 149 449 325 HOH HOH . F 5 HOH A 150 450 94 HOH HOH . F 5 HOH A 151 451 170 HOH HOH . F 5 HOH A 152 452 210 HOH HOH . F 5 HOH A 153 453 175 HOH HOH . F 5 HOH A 154 454 45 HOH HOH . F 5 HOH A 155 455 208 HOH HOH . F 5 HOH A 156 456 247 HOH HOH . F 5 HOH A 157 457 42 HOH HOH . F 5 HOH A 158 458 314 HOH HOH . F 5 HOH A 159 459 312 HOH HOH . F 5 HOH A 160 460 128 HOH HOH . F 5 HOH A 161 461 139 HOH HOH . F 5 HOH A 162 462 179 HOH HOH . F 5 HOH A 163 463 291 HOH HOH . F 5 HOH A 164 464 265 HOH HOH . F 5 HOH A 165 465 200 HOH HOH . F 5 HOH A 166 466 244 HOH HOH . F 5 HOH A 167 467 311 HOH HOH . F 5 HOH A 168 468 124 HOH HOH . G 5 HOH B 1 301 235 HOH HOH . G 5 HOH B 2 302 114 HOH HOH . G 5 HOH B 3 303 109 HOH HOH . G 5 HOH B 4 304 138 HOH HOH . G 5 HOH B 5 305 161 HOH HOH . G 5 HOH B 6 306 39 HOH HOH . G 5 HOH B 7 307 49 HOH HOH . G 5 HOH B 8 308 333 HOH HOH . G 5 HOH B 9 309 256 HOH HOH . G 5 HOH B 10 310 322 HOH HOH . G 5 HOH B 11 311 229 HOH HOH . G 5 HOH B 12 312 88 HOH HOH . G 5 HOH B 13 313 86 HOH HOH . G 5 HOH B 14 314 55 HOH HOH . G 5 HOH B 15 315 326 HOH HOH . G 5 HOH B 16 316 41 HOH HOH . G 5 HOH B 17 317 119 HOH HOH . G 5 HOH B 18 318 62 HOH HOH . G 5 HOH B 19 319 26 HOH HOH . G 5 HOH B 20 320 31 HOH HOH . G 5 HOH B 21 321 95 HOH HOH . G 5 HOH B 22 322 146 HOH HOH . G 5 HOH B 23 323 133 HOH HOH . G 5 HOH B 24 324 168 HOH HOH . G 5 HOH B 25 325 141 HOH HOH . G 5 HOH B 26 326 37 HOH HOH . G 5 HOH B 27 327 48 HOH HOH . G 5 HOH B 28 328 242 HOH HOH . G 5 HOH B 29 329 317 HOH HOH . G 5 HOH B 30 330 15 HOH HOH . G 5 HOH B 31 331 76 HOH HOH . G 5 HOH B 32 332 84 HOH HOH . G 5 HOH B 33 333 126 HOH HOH . G 5 HOH B 34 334 70 HOH HOH . G 5 HOH B 35 335 212 HOH HOH . G 5 HOH B 36 336 328 HOH HOH . G 5 HOH B 37 337 196 HOH HOH . G 5 HOH B 38 338 20 HOH HOH . G 5 HOH B 39 339 216 HOH HOH . G 5 HOH B 40 340 150 HOH HOH . G 5 HOH B 41 341 83 HOH HOH . G 5 HOH B 42 342 43 HOH HOH . G 5 HOH B 43 343 101 HOH HOH . G 5 HOH B 44 344 318 HOH HOH . G 5 HOH B 45 345 332 HOH HOH . G 5 HOH B 46 346 38 HOH HOH . G 5 HOH B 47 347 182 HOH HOH . G 5 HOH B 48 348 24 HOH HOH . G 5 HOH B 49 349 118 HOH HOH . G 5 HOH B 50 350 320 HOH HOH . G 5 HOH B 51 351 91 HOH HOH . G 5 HOH B 52 352 65 HOH HOH . G 5 HOH B 53 353 157 HOH HOH . G 5 HOH B 54 354 104 HOH HOH . G 5 HOH B 55 355 96 HOH HOH . G 5 HOH B 56 356 304 HOH HOH . G 5 HOH B 57 357 154 HOH HOH . G 5 HOH B 58 358 111 HOH HOH . G 5 HOH B 59 359 321 HOH HOH . G 5 HOH B 60 360 106 HOH HOH . G 5 HOH B 61 361 120 HOH HOH . G 5 HOH B 62 362 213 HOH HOH . G 5 HOH B 63 363 178 HOH HOH . G 5 HOH B 64 364 145 HOH HOH . G 5 HOH B 65 365 280 HOH HOH . G 5 HOH B 66 366 132 HOH HOH . G 5 HOH B 67 367 5 HOH HOH . G 5 HOH B 68 368 90 HOH HOH . G 5 HOH B 69 369 274 HOH HOH . G 5 HOH B 70 370 319 HOH HOH . G 5 HOH B 71 371 297 HOH HOH . G 5 HOH B 72 372 243 HOH HOH . G 5 HOH B 73 373 207 HOH HOH . G 5 HOH B 74 374 102 HOH HOH . G 5 HOH B 75 375 60 HOH HOH . G 5 HOH B 76 376 32 HOH HOH . G 5 HOH B 77 377 331 HOH HOH . G 5 HOH B 78 378 268 HOH HOH . G 5 HOH B 79 379 108 HOH HOH . G 5 HOH B 80 380 201 HOH HOH . G 5 HOH B 81 381 202 HOH HOH . G 5 HOH B 82 382 329 HOH HOH . G 5 HOH B 83 383 262 HOH HOH . G 5 HOH B 84 384 77 HOH HOH . G 5 HOH B 85 385 199 HOH HOH . G 5 HOH B 86 386 123 HOH HOH . G 5 HOH B 87 387 167 HOH HOH . G 5 HOH B 88 388 259 HOH HOH . G 5 HOH B 89 389 237 HOH HOH . G 5 HOH B 90 390 305 HOH HOH . G 5 HOH B 91 391 296 HOH HOH . G 5 HOH B 92 392 298 HOH HOH . G 5 HOH B 93 393 166 HOH HOH . G 5 HOH B 94 394 174 HOH HOH . G 5 HOH B 95 395 52 HOH HOH . G 5 HOH B 96 396 192 HOH HOH . G 5 HOH B 97 397 78 HOH HOH . G 5 HOH B 98 398 188 HOH HOH . G 5 HOH B 99 399 177 HOH HOH . G 5 HOH B 100 400 287 HOH HOH . G 5 HOH B 101 401 300 HOH HOH . G 5 HOH B 102 402 143 HOH HOH . G 5 HOH B 103 403 303 HOH HOH . G 5 HOH B 104 404 165 HOH HOH . G 5 HOH B 105 405 289 HOH HOH . G 5 HOH B 106 406 279 HOH HOH . G 5 HOH B 107 407 330 HOH HOH . G 5 HOH B 108 408 103 HOH HOH . G 5 HOH B 109 409 231 HOH HOH . G 5 HOH B 110 410 334 HOH HOH . G 5 HOH B 111 411 134 HOH HOH . G 5 HOH B 112 412 153 HOH HOH . G 5 HOH B 113 413 160 HOH HOH . G 5 HOH B 114 414 158 HOH HOH . G 5 HOH B 115 415 225 HOH HOH . G 5 HOH B 116 416 152 HOH HOH . G 5 HOH B 117 417 236 HOH HOH . G 5 HOH B 118 418 238 HOH HOH . G 5 HOH B 119 419 281 HOH HOH . G 5 HOH B 120 420 173 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 3.359 _atom_site.Cartn_y 18.718 _atom_site.Cartn_z 30.469 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 91.95 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 202 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 1 #