data_8U5B # _model_server_result.job_id q9Jw4UCbWuKZ6-OL1Z20EQ _model_server_result.datetime_utc '2024-11-06 00:38:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u5b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 8U5B # _exptl.entry_id 8U5B _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1005.188 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Lauryl Maltose Neopentyl Glycol' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8U5B _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8U5B _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 54 A CYS 54 1_555 A SG CYS 64 A CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 C SG CYS 24 L CYS 48 1_555 C SG CYS 89 L CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 C SG CYS 135 L CYS 159 1_555 C SG CYS 195 L CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 D SG CYS 48 H CYS 48 1_555 D SG CYS 122 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? disulf ? disulf5 D SG CYS 180 H CYS 180 1_555 D SG CYS 236 H CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? # _chem_comp.formula 'C47 H88 O22' _chem_comp.formula_weight 1005.188 _chem_comp.id AV0 _chem_comp.mon_nstd_flag . _chem_comp.name 'Lauryl Maltose Neopentyl Glycol' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2,2-didecylpropane-1,3-bis-b-D-maltopyranoside;2-decyl-2-{[(4-O-alpha-D-glucopyranosyl-beta-D-glucopyranosyl)oxy]methyl}dodecyl4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAB CAX AV0 sing 70 n n CAX CAZ AV0 sing 71 n n CAA CAW AV0 sing 72 n n CAZ CBB AV0 sing 73 n n CAW CAY AV0 sing 74 n n CBB CBD AV0 sing 75 n n CAY CBA AV0 sing 76 n n CBD CBF AV0 sing 77 n n CBA CBC AV0 sing 78 n n CBC CBE AV0 sing 79 n n CBF CBH AV0 sing 80 n n CBE CBG AV0 sing 81 n n CBH CBJ AV0 sing 82 n n OAJ CBN AV0 sing 83 n n OAR CCO AV0 sing 84 n n CBG CBI AV0 sing 85 n n CBJ CBL AV0 sing 86 n n CBL CBR AV0 sing 87 n n CBP OAL AV0 sing 88 n n CBP CCF AV0 sing 89 n n CBN CCD AV0 sing 90 n n CCO CCD AV0 sing 91 n n CCO CCU AV0 sing 92 n n CBI CBK AV0 sing 93 n n OAT CCU AV0 sing 94 n n CCD OBZ AV0 sing 95 n n CCU CCW AV0 sing 96 n n CBQ CBK AV0 sing 97 n n CBQ CCM AV0 sing 98 n n CCF OBX AV0 sing 99 n n CCF CCQ AV0 sing 100 n n CBR CCM AV0 sing 101 n n CBT CCM AV0 sing 102 n n CBT OBV AV0 sing 103 n n OBX CCJ AV0 sing 104 n n CCM CBS AV0 sing 105 n n OBZ CCS AV0 sing 106 n n OCB CCQ AV0 sing 107 n n OCB CCS AV0 sing 108 n n CCW CCS AV0 sing 109 n n CCW OAV AV0 sing 110 n n CCQ CCH AV0 sing 111 n n CCJ OBV AV0 sing 112 n n CCJ CCL AV0 sing 113 n n CBS O1 AV0 sing 114 n n O1 C1 AV0 sing 115 n n CCH CCL AV0 sing 116 n n CCH OAN AV0 sing 117 n n CCL OAP AV0 sing 118 n n O2 C2 AV0 sing 119 n n C1 C2 AV0 sing 120 n n C1 O5 AV0 sing 121 n n C2 C3 AV0 sing 122 n n O5 C5 AV0 sing 123 n n C3 O3 AV0 sing 124 n n C3 C4 AV0 sing 125 n n C5 C4 AV0 sing 126 n n C5 C6 AV0 sing 127 n n C4 O4 AV0 sing 128 n n C6 O6 AV0 sing 129 n n O4 CCR AV0 sing 130 n n CCR OBY AV0 sing 131 n n CCR CCV AV0 sing 132 n n OBY CCC AV0 sing 133 n n OAU CCV AV0 sing 134 n n CCV CCT AV0 sing 135 n n CCC CBM AV0 sing 136 n n CCC CCN AV0 sing 137 n n CBM OAI AV0 sing 138 n n CCT CCN AV0 sing 139 n n CCT OAS AV0 sing 140 n n CCN OAQ AV0 sing 141 n n C1 H1 AV0 sing 142 n n C2 H2 AV0 sing 143 n n O2 H3 AV0 sing 144 n n C3 H4 AV0 sing 145 n n O3 H5 AV0 sing 146 n n C4 H6 AV0 sing 147 n n C5 H7 AV0 sing 148 n n C6 H8 AV0 sing 149 n n C6 H9 AV0 sing 150 n n O6 H10 AV0 sing 151 n n CAA H11 AV0 sing 152 n n CAA H12 AV0 sing 153 n n CAA H13 AV0 sing 154 n n CAB H14 AV0 sing 155 n n CAB H15 AV0 sing 156 n n CAB H16 AV0 sing 157 n n OAI H17 AV0 sing 158 n n OAJ H18 AV0 sing 159 n n OAL H19 AV0 sing 160 n n OAN H20 AV0 sing 161 n n OAP H21 AV0 sing 162 n n OAQ H22 AV0 sing 163 n n OAR H23 AV0 sing 164 n n OAS H24 AV0 sing 165 n n OAT H25 AV0 sing 166 n n OAU H26 AV0 sing 167 n n OAV H27 AV0 sing 168 n n CAW H28 AV0 sing 169 n n CAW H29 AV0 sing 170 n n CAX H30 AV0 sing 171 n n CAX H31 AV0 sing 172 n n CAY H32 AV0 sing 173 n n CAY H33 AV0 sing 174 n n CAZ H34 AV0 sing 175 n n CAZ H35 AV0 sing 176 n n CBA H36 AV0 sing 177 n n CBA H37 AV0 sing 178 n n CBB H38 AV0 sing 179 n n CBB H39 AV0 sing 180 n n CBC H40 AV0 sing 181 n n CBC H41 AV0 sing 182 n n CBD H42 AV0 sing 183 n n CBD H43 AV0 sing 184 n n CBE H44 AV0 sing 185 n n CBE H45 AV0 sing 186 n n CBF H46 AV0 sing 187 n n CBF H47 AV0 sing 188 n n CBG H48 AV0 sing 189 n n CBG H49 AV0 sing 190 n n CBH H50 AV0 sing 191 n n CBH H51 AV0 sing 192 n n CBI H52 AV0 sing 193 n n CBI H53 AV0 sing 194 n n CBJ H54 AV0 sing 195 n n CBJ H55 AV0 sing 196 n n CBK H56 AV0 sing 197 n n CBK H57 AV0 sing 198 n n CBL H58 AV0 sing 199 n n CBL H59 AV0 sing 200 n n CBM H60 AV0 sing 201 n n CBM H61 AV0 sing 202 n n CBN H62 AV0 sing 203 n n CBN H63 AV0 sing 204 n n CBP H64 AV0 sing 205 n n CBP H65 AV0 sing 206 n n CBQ H66 AV0 sing 207 n n CBQ H67 AV0 sing 208 n n CBR H68 AV0 sing 209 n n CBR H69 AV0 sing 210 n n CBS H70 AV0 sing 211 n n CBS H71 AV0 sing 212 n n CBT H72 AV0 sing 213 n n CBT H73 AV0 sing 214 n n CCC H74 AV0 sing 215 n n CCD H75 AV0 sing 216 n n CCF H76 AV0 sing 217 n n CCH H77 AV0 sing 218 n n CCJ H78 AV0 sing 219 n n CCL H79 AV0 sing 220 n n CCN H80 AV0 sing 221 n n CCO H81 AV0 sing 222 n n CCQ H82 AV0 sing 223 n n CCR H83 AV0 sing 224 n n CCS H84 AV0 sing 225 n n CCT H85 AV0 sing 226 n n CCU H86 AV0 sing 227 n n CCV H87 AV0 sing 228 n n CCW H88 AV0 sing 229 n n # _atom_sites.entry_id 8U5B _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id E _pdbx_nonpoly_scheme.entity_id 5 _pdbx_nonpoly_scheme.mon_id AV0 _pdbx_nonpoly_scheme.pdb_strand_id H _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 301 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id AV0 _pdbx_nonpoly_scheme.auth_mon_id AV0 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AV0 . . . E 5 118.344 126.137 140.358 1 161.73 ? C1 AV0 301 H 1 HETATM 2 O O1 AV0 . . . E 5 119.738 126.042 140.172 1 161.31 ? O1 AV0 301 H 1 HETATM 3 C C2 AV0 . . . E 5 117.834 127.485 139.928 1 159.39 ? C2 AV0 301 H 1 HETATM 4 O O2 AV0 . . . E 5 118.372 128.499 140.77 1 155.56 ? O2 AV0 301 H 1 HETATM 5 C C3 AV0 . . . E 5 116.335 127.494 140.087 1 159.52 ? C3 AV0 301 H 1 HETATM 6 O O3 AV0 . . . E 5 115.824 128.716 139.545 1 159.58 ? O3 AV0 301 H 1 HETATM 7 C C4 AV0 . . . E 5 115.731 126.324 139.335 1 160.09 ? C4 AV0 301 H 1 HETATM 8 O O4 AV0 . . . E 5 114.362 126.217 139.707 1 160.54 ? O4 AV0 301 H 1 HETATM 9 C C5 AV0 . . . E 5 116.433 125.038 139.708 1 160.71 ? C5 AV0 301 H 1 HETATM 10 O O5 AV0 . . . E 5 117.82 125.17 139.48 1 163.08 ? O5 AV0 301 H 1 HETATM 11 C C6 AV0 . . . E 5 115.952 123.907 138.809 1 155.93 ? C6 AV0 301 H 1 HETATM 12 O O6 AV0 . . . E 5 116.353 124.19 137.47 1 156.25 ? O6 AV0 301 H 1 HETATM 13 C CAA AV0 . . . E 5 118.462 122.407 150.054 1 154.33 ? CAA AV0 301 H 1 HETATM 14 C CAB AV0 . . . E 5 121.407 120.872 148.249 1 156.64 ? CAB AV0 301 H 1 HETATM 15 O OAI AV0 . . . E 5 113.037 122.877 137.223 1 158.31 ? OAI AV0 301 H 1 HETATM 16 O OAJ AV0 . . . E 5 125.392 130.194 133.825 1 158.51 ? OAJ AV0 301 H 1 HETATM 17 O OAL AV0 . . . E 5 124.567 128.309 136.423 1 156.83 ? OAL AV0 301 H 1 HETATM 18 O OAN AV0 . . . E 5 120.575 132.235 138.698 1 155.17 ? OAN AV0 301 H 1 HETATM 19 O OAP AV0 . . . E 5 120.199 130.134 140.505 1 161.56 ? OAP AV0 301 H 1 HETATM 20 O OAQ AV0 . . . E 5 111.848 125.223 141.044 1 157.69 ? OAQ AV0 301 H 1 HETATM 21 O OAR AV0 . . . E 5 122.142 131.74 131.897 1 161.16 ? OAR AV0 301 H 1 HETATM 22 O OAS AV0 . . . E 5 110.663 126.578 137.852 1 158.03 ? OAS AV0 301 H 1 HETATM 23 O OAT AV0 . . . E 5 120.507 133.699 133.074 1 158.53 ? OAT AV0 301 H 1 HETATM 24 O OAU AV0 . . . E 5 112.634 127.726 140.718 1 159.46 ? OAU AV0 301 H 1 HETATM 25 O OAV AV0 . . . E 5 120.67 133.964 135.853 1 161.4 ? OAV AV0 301 H 1 HETATM 26 C CAW AV0 . . . E 5 119.285 123.5 149.374 1 157.44 ? CAW AV0 301 H 1 HETATM 27 C CAX AV0 . . . E 5 122.41 121.265 147.164 1 158.18 ? CAX AV0 301 H 1 HETATM 28 C CAY AV0 . . . E 5 118.35 124.453 148.636 1 158.91 ? CAY AV0 301 H 1 HETATM 29 C CAZ AV0 . . . E 5 121.812 120.998 145.783 1 159.15 ? CAZ AV0 301 H 1 HETATM 30 C CBA AV0 . . . E 5 119.188 125.494 147.904 1 157.1 ? CBA AV0 301 H 1 HETATM 31 C CBB AV0 . . . E 5 122.832 121.391 144.72 1 159.28 ? CBB AV0 301 H 1 HETATM 32 C CBC AV0 . . . E 5 118.278 126.373 147.048 1 157.28 ? CBC AV0 301 H 1 HETATM 33 C CBD AV0 . . . E 5 123.081 122.892 144.793 1 158.5 ? CBD AV0 301 H 1 HETATM 34 C CBE AV0 . . . E 5 119.11 127.419 146.305 1 156.81 ? CBE AV0 301 H 1 HETATM 35 C CBF AV0 . . . E 5 124.427 123.2 144.149 1 157.56 ? CBF AV0 301 H 1 HETATM 36 C CBG AV0 . . . E 5 119.473 126.925 144.904 1 158.32 ? CBG AV0 301 H 1 HETATM 37 C CBH AV0 . . . E 5 124.409 122.833 142.665 1 154.54 ? CBH AV0 301 H 1 HETATM 38 C CBI AV0 . . . E 5 120.34 125.671 144.975 1 158.53 ? CBI AV0 301 H 1 HETATM 39 C CBJ AV0 . . . E 5 123.581 123.859 141.9 1 157.48 ? CBJ AV0 301 H 1 HETATM 40 C CBK AV0 . . . E 5 120.642 125.203 143.557 1 157.32 ? CBK AV0 301 H 1 HETATM 41 C CBL AV0 . . . E 5 124.016 125.254 142.346 1 157.95 ? CBL AV0 301 H 1 HETATM 42 C CBM AV0 . . . E 5 111.981 123.46 137.99 1 159.21 ? CBM AV0 301 H 1 HETATM 43 C CBN AV0 . . . E 5 124.626 131.143 133.089 1 157.9 ? CBN AV0 301 H 1 HETATM 44 C CBP AV0 . . . E 5 124.098 129.628 136.632 1 154.27 ? CBP AV0 301 H 1 HETATM 45 C CBQ AV0 . . . E 5 121.626 126.168 142.903 1 157.06 ? CBQ AV0 301 H 1 HETATM 46 C CBR AV0 . . . E 5 123.196 126.337 141.652 1 157.92 ? CBR AV0 301 H 1 HETATM 47 C CBS AV0 . . . E 5 120.427 126.508 141.322 1 156.57 ? CBS AV0 301 H 1 HETATM 48 C CBT AV0 . . . E 5 122.032 126.637 140.162 1 152.78 ? CBT AV0 301 H 1 HETATM 49 O OBV AV0 . . . E 5 121.974 128.036 140.474 1 154.71 ? OBV AV0 301 H 1 HETATM 50 O OBX AV0 . . . E 5 122.954 128.873 138.527 1 152.32 ? OBX AV0 301 H 1 HETATM 51 O OBY AV0 . . . E 5 113.053 125.64 137.934 1 162.7 ? OBY AV0 301 H 1 HETATM 52 O OBZ AV0 . . . E 5 123.788 132.249 135.11 1 158.37 ? OBZ AV0 301 H 1 HETATM 53 O OCB AV0 . . . E 5 121.872 131.536 136.27 1 159.51 ? OCB AV0 301 H 1 HETATM 54 C CCC AV0 . . . E 5 112.532 124.622 138.815 1 161.55 ? CCC AV0 301 H 1 HETATM 55 C CCD AV0 . . . E 5 123.4 131.552 133.906 1 157.77 ? CCD AV0 301 H 1 HETATM 56 C CCF AV0 . . . E 5 122.739 129.558 137.297 1 155.1 ? CCF AV0 301 H 1 HETATM 57 C CCH AV0 . . . E 5 121 130.907 138.39 1 156.61 ? CCH AV0 301 H 1 HETATM 58 C CCJ AV0 . . . E 5 121.752 128.798 139.283 1 156.58 ? CCJ AV0 301 H 1 HETATM 59 C CCL AV0 . . . E 5 121.347 130.19 139.661 1 159.33 ? CCL AV0 301 H 1 HETATM 60 C CCM AV0 . . . E 5 121.785 125.786 141.418 1 154.91 ? CCM AV0 301 H 1 HETATM 61 C CCN AV0 . . . E 5 111.42 125.195 139.678 1 162.41 ? CCN AV0 301 H 1 HETATM 62 C CCO AV0 . . . E 5 122.547 132.456 133.058 1 158.33 ? CCO AV0 301 H 1 HETATM 63 C CCQ AV0 . . . E 5 122.234 130.961 137.524 1 158.16 ? CCQ AV0 301 H 1 HETATM 64 C CCR AV0 . . . E 5 113.523 126.751 138.697 1 162.81 ? CCR AV0 301 H 1 HETATM 65 C CCS AV0 . . . E 5 122.664 132.662 135.901 1 160.05 ? CCS AV0 301 H 1 HETATM 66 C CCT AV0 . . . E 5 111.099 126.603 139.218 1 161.9 ? CCT AV0 301 H 1 HETATM 67 C CCU AV0 . . . E 5 121.336 132.841 133.858 1 158.6 ? CCU AV0 301 H 1 HETATM 68 C CCV AV0 . . . E 5 112.345 127.466 139.333 1 162.22 ? CCV AV0 301 H 1 HETATM 69 C CCW AV0 . . . E 5 121.804 133.582 135.08 1 159.19 ? CCW AV0 301 H 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 69 #