data_8U5D
#
_model_server_result.job_id            jzYN1asvkMDz-38JD49FmA 
_model_server_result.datetime_utc      '2025-03-01 08:07:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8u5d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":205}' 
#
_entry.id    8U5D 
#
_exptl.entry_id    8U5D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    18 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8U5D 
_cell.length_a            65.12 
_cell.length_b            65.12 
_cell.length_c            130.77 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8U5D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
? 3 H N N 
? 3 K N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 X N N 
? 3 Y N N 
? 3 Z N N 
? 3 AA N N 
? 3 BA N N 
? 3 CA N N 
? 3 FA N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 122 n n 
C1 C2 GOL sing 123 n n 
C1 H11 GOL sing 124 n n 
C1 H12 GOL sing 125 n n 
O1 HO1 GOL sing 126 n n 
C2 O2 GOL sing 127 n n 
C2 C3 GOL sing 128 n n 
C2 H2 GOL sing 129 n n 
O2 HO2 GOL sing 130 n n 
C3 O3 GOL sing 131 n n 
C3 H31 GOL sing 132 n n 
C3 H32 GOL sing 133 n n 
O3 HO3 GOL sing 134 n n 
#
_atom_sites.entry_id                     8U5D 
_atom_sites.fract_transf_matrix[1][1]    0.015356 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015356 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007647 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ACT A 1 201 201 ACT ACT . 
D 2 ACT A 1 202 202 ACT ACT . 
E 3 GOL A 1 203 204 GOL GOL . 
F 2 ACT A 1 204 205 ACT ACT . 
G 3 GOL A 1 205 206 GOL GOL . 
H 3 GOL A 1 206 207 GOL GOL . 
I 2 ACT A 1 207 208 ACT ACT . 
J 2 ACT A 1 208 209 ACT ACT . 
K 3 GOL A 1 209 210 GOL GOL . 
L 2 ACT A 1 210 211 ACT ACT . 
M 3 GOL A 1 211 212 GOL GOL . 
N 3 GOL A 1 212 213 GOL GOL . 
O 3 GOL A 1 213 214 GOL GOL . 
P 3 GOL A 1 214 216 GOL GOL . 
Q 3 GOL A 1 215 207 GOL GOL . 
R 3 GOL B 1 201 201 GOL GOL . 
S 3 GOL B 1 202 202 GOL GOL . 
T 4 SO4 B 1 203 203 SO4 SO4 . 
U 2 ACT B 1 204 204 ACT ACT . 
V 2 ACT B 1 205 206 ACT ACT . 
W 2 ACT B 1 206 208 ACT ACT . 
X 3 GOL B 1 207 209 GOL GOL . 
Y 3 GOL B 1 208 210 GOL GOL . 
Z 3 GOL B 1 209 211 GOL GOL . 
AA 3 GOL B 1 210 212 GOL GOL . 
BA 3 GOL B 1 211 213 GOL GOL . 
CA 3 GOL B 1 212 214 GOL GOL . 
DA 2 ACT B 1 213 215 ACT ACT . 
EA 2 ACT B 1 214 216 ACT ACT . 
FA 3 GOL B 1 215 217 GOL GOL . 
GA 5 HOH A 1 301 8 HOH HOH . 
GA 5 HOH A 2 302 61 HOH HOH . 
GA 5 HOH A 3 303 171 HOH HOH . 
GA 5 HOH A 4 304 45 HOH HOH . 
GA 5 HOH A 5 305 35 HOH HOH . 
GA 5 HOH A 6 306 49 HOH HOH . 
GA 5 HOH A 7 307 52 HOH HOH . 
GA 5 HOH A 8 308 63 HOH HOH . 
GA 5 HOH A 9 309 37 HOH HOH . 
GA 5 HOH A 10 310 53 HOH HOH . 
GA 5 HOH A 11 311 60 HOH HOH . 
GA 5 HOH A 12 312 98 HOH HOH . 
GA 5 HOH A 13 313 168 HOH HOH . 
GA 5 HOH A 14 314 51 HOH HOH . 
GA 5 HOH A 15 315 76 HOH HOH . 
GA 5 HOH A 16 316 161 HOH HOH . 
GA 5 HOH A 17 317 39 HOH HOH . 
GA 5 HOH A 18 318 74 HOH HOH . 
GA 5 HOH A 19 319 165 HOH HOH . 
GA 5 HOH A 20 320 67 HOH HOH . 
GA 5 HOH A 21 321 47 HOH HOH . 
GA 5 HOH A 22 322 141 HOH HOH . 
GA 5 HOH A 23 323 64 HOH HOH . 
GA 5 HOH A 24 324 55 HOH HOH . 
GA 5 HOH A 25 325 90 HOH HOH . 
GA 5 HOH A 26 326 42 HOH HOH . 
GA 5 HOH A 27 327 156 HOH HOH . 
GA 5 HOH A 28 328 68 HOH HOH . 
GA 5 HOH A 29 329 91 HOH HOH . 
GA 5 HOH A 30 330 1 HOH HOH . 
GA 5 HOH A 31 331 151 HOH HOH . 
GA 5 HOH A 32 332 83 HOH HOH . 
GA 5 HOH A 33 333 59 HOH HOH . 
GA 5 HOH A 34 334 135 HOH HOH . 
GA 5 HOH A 35 335 77 HOH HOH . 
GA 5 HOH A 36 336 160 HOH HOH . 
GA 5 HOH A 37 337 56 HOH HOH . 
GA 5 HOH A 38 338 176 HOH HOH . 
GA 5 HOH A 39 339 79 HOH HOH . 
GA 5 HOH A 40 340 137 HOH HOH . 
GA 5 HOH A 41 341 38 HOH HOH . 
GA 5 HOH A 42 342 40 HOH HOH . 
GA 5 HOH A 43 343 78 HOH HOH . 
GA 5 HOH A 44 344 34 HOH HOH . 
GA 5 HOH A 45 345 133 HOH HOH . 
GA 5 HOH A 46 346 36 HOH HOH . 
GA 5 HOH A 47 347 43 HOH HOH . 
GA 5 HOH A 48 348 75 HOH HOH . 
GA 5 HOH A 49 349 131 HOH HOH . 
GA 5 HOH A 50 350 172 HOH HOH . 
GA 5 HOH A 51 351 73 HOH HOH . 
GA 5 HOH A 52 352 101 HOH HOH . 
GA 5 HOH A 53 353 3 HOH HOH . 
GA 5 HOH A 54 354 173 HOH HOH . 
GA 5 HOH A 55 355 99 HOH HOH . 
GA 5 HOH A 56 356 169 HOH HOH . 
GA 5 HOH A 57 357 82 HOH HOH . 
GA 5 HOH A 58 358 162 HOH HOH . 
GA 5 HOH A 59 359 104 HOH HOH . 
GA 5 HOH A 60 360 66 HOH HOH . 
GA 5 HOH A 61 361 89 HOH HOH . 
GA 5 HOH A 62 362 80 HOH HOH . 
GA 5 HOH A 63 363 159 HOH HOH . 
GA 5 HOH A 64 364 170 HOH HOH . 
GA 5 HOH A 65 365 130 HOH HOH . 
GA 5 HOH A 66 366 50 HOH HOH . 
HA 5 HOH B 1 301 127 HOH HOH . 
HA 5 HOH B 2 302 121 HOH HOH . 
HA 5 HOH B 3 303 29 HOH HOH . 
HA 5 HOH B 4 304 166 HOH HOH . 
HA 5 HOH B 5 305 18 HOH HOH . 
HA 5 HOH B 6 306 7 HOH HOH . 
HA 5 HOH B 7 307 62 HOH HOH . 
HA 5 HOH B 8 308 15 HOH HOH . 
HA 5 HOH B 9 309 22 HOH HOH . 
HA 5 HOH B 10 310 12 HOH HOH . 
HA 5 HOH B 11 311 107 HOH HOH . 
HA 5 HOH B 12 312 152 HOH HOH . 
HA 5 HOH B 13 313 26 HOH HOH . 
HA 5 HOH B 14 314 9 HOH HOH . 
HA 5 HOH B 15 315 41 HOH HOH . 
HA 5 HOH B 16 316 25 HOH HOH . 
HA 5 HOH B 17 317 81 HOH HOH . 
HA 5 HOH B 18 318 14 HOH HOH . 
HA 5 HOH B 19 319 23 HOH HOH . 
HA 5 HOH B 20 320 108 HOH HOH . 
HA 5 HOH B 21 321 44 HOH HOH . 
HA 5 HOH B 22 322 138 HOH HOH . 
HA 5 HOH B 23 323 164 HOH HOH . 
HA 5 HOH B 24 324 155 HOH HOH . 
HA 5 HOH B 25 325 5 HOH HOH . 
HA 5 HOH B 26 326 24 HOH HOH . 
HA 5 HOH B 27 327 144 HOH HOH . 
HA 5 HOH B 28 328 27 HOH HOH . 
HA 5 HOH B 29 329 48 HOH HOH . 
HA 5 HOH B 30 330 154 HOH HOH . 
HA 5 HOH B 31 331 21 HOH HOH . 
HA 5 HOH B 32 332 142 HOH HOH . 
HA 5 HOH B 33 333 19 HOH HOH . 
HA 5 HOH B 34 334 106 HOH HOH . 
HA 5 HOH B 35 335 13 HOH HOH . 
HA 5 HOH B 36 336 11 HOH HOH . 
HA 5 HOH B 37 337 175 HOH HOH . 
HA 5 HOH B 38 338 117 HOH HOH . 
HA 5 HOH B 39 339 112 HOH HOH . 
HA 5 HOH B 40 340 17 HOH HOH . 
HA 5 HOH B 41 341 125 HOH HOH . 
HA 5 HOH B 42 342 96 HOH HOH . 
HA 5 HOH B 43 343 28 HOH HOH . 
HA 5 HOH B 44 344 4 HOH HOH . 
HA 5 HOH B 45 345 122 HOH HOH . 
HA 5 HOH B 46 346 116 HOH HOH . 
HA 5 HOH B 47 347 115 HOH HOH . 
HA 5 HOH B 48 348 10 HOH HOH . 
HA 5 HOH B 49 349 140 HOH HOH . 
HA 5 HOH B 50 350 132 HOH HOH . 
HA 5 HOH B 51 351 147 HOH HOH . 
HA 5 HOH B 52 352 113 HOH HOH . 
HA 5 HOH B 53 353 85 HOH HOH . 
HA 5 HOH B 54 354 86 HOH HOH . 
HA 5 HOH B 55 355 126 HOH HOH . 
HA 5 HOH B 56 356 143 HOH HOH . 
HA 5 HOH B 57 357 114 HOH HOH . 
HA 5 HOH B 58 358 153 HOH HOH . 
HA 5 HOH B 59 359 124 HOH HOH . 
HA 5 HOH B 60 360 95 HOH HOH . 
HA 5 HOH B 61 361 167 HOH HOH . 
HA 5 HOH B 62 362 2 HOH HOH . 
HA 5 HOH B 63 363 109 HOH HOH . 
HA 5 HOH B 64 364 145 HOH HOH . 
HA 5 HOH B 65 365 120 HOH HOH . 
HA 5 HOH B 66 366 88 HOH HOH . 
HA 5 HOH B 67 367 123 HOH HOH . 
HA 5 HOH B 68 368 146 HOH HOH . 
HA 5 HOH B 69 369 174 HOH HOH . 
HA 5 HOH B 70 370 87 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 3 -12.61 0.67 10.092 1 84.81 ? C1 GOL 205 A 1 
HETATM 2 O O1 GOL . . . G 3 -13.979 0.56 9.863 1 94.03 ? O1 GOL 205 A 1 
HETATM 3 C C2 GOL . . . G 3 -12.34 2.136 10.452 1 84.93 ? C2 GOL 205 A 1 
HETATM 4 O O2 GOL . . . G 3 -11.001 2.362 10.648 1 91.7 ? O2 GOL 205 A 1 
HETATM 5 C C3 GOL . . . G 3 -13.171 2.388 11.712 1 90.03 ? C3 GOL 205 A 1 
HETATM 6 O O3 GOL . . . G 3 -12.7 3.577 12.265 1 93.32 ? O3 GOL 205 A 1 
HETATM 7 H H11 GOL . . . G 3 -12.304 0.099 10.814 1 101.77 ? H11 GOL 205 A 1 
HETATM 8 H H12 GOL . . . G 3 -12.08 0.426 9.317 1 101.77 ? H12 GOL 205 A 1 
HETATM 9 H HO1 GOL . . . G 3 -14.142 0.998 9.153 1 112.84 ? HO1 GOL 205 A 1 
HETATM 10 H H2 GOL . . . G 3 -12.614 2.731 9.736 1 101.91 ? H2 GOL 205 A 1 
HETATM 11 H HO2 GOL . . . G 3 -10.584 2.071 9.967 1 110.03 ? HO2 GOL 205 A 1 
HETATM 12 H H31 GOL . . . G 3 -14.11 2.42 11.471 1 108.03 ? H31 GOL 205 A 1 
HETATM 13 H H32 GOL . . . G 3 -13.085 1.626 12.306 1 108.03 ? H32 GOL 205 A 1 
HETATM 14 H HO3 GOL . . . G 3 -12.809 4.18 11.676 1 111.98 ? HO3 GOL 205 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#