data_8U63 # _model_server_result.job_id HSyEseEDzudBhMf19MrHxQ _model_server_result.datetime_utc '2024-11-20 02:37:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u63 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":900}' # _entry.id 8U63 # _exptl.entry_id 8U63 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 585.67 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8U63 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8U63 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 17 A CYS 16 1_555 C CBA LBV . A LBV 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.702 ? covale ? covale2 B SG CYS 17 B CYS 16 1_555 D CBA LBV . B LBV 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.703 ? # _chem_comp.formula 'C33 H37 N4 O6 1' _chem_comp.formula_weight 585.67 _chem_comp.id LBV _chem_comp.mon_nstd_flag . _chem_comp.name '3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2(R),3(E)- PHYTOCHROMOBILIN' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1A N_A LBV sing 171 n n C1A C2A LBV sing 172 n n C1B C2B LBV doub 173 n y C1B CHB LBV sing 174 n n O1B CGB LBV doub 175 n n C1C CHC LBV doub 176 z n C1D CHD LBV doub 177 z n C2A CMA LBV sing 178 n n C2A C3A LBV sing 179 n n C2B CMB LBV sing 180 n n C2C C1C LBV sing 181 n n O2C CGC LBV doub 182 n n C2D C1D LBV sing 183 n n C2D CMD LBV sing 184 n n C3A CAA LBV doub 185 e n C3B C2B LBV sing 186 n y C3B CAB LBV sing 187 n n C3C C2C LBV doub 188 n n C3C C4C LBV sing 189 n n C3D C2D LBV doub 190 n n C4A C3A LBV sing 191 n n C4A CHB LBV doub 192 z n C4B C3B LBV doub 193 n y C4B N_B LBV sing 194 n y C4C N_C LBV doub 195 n n C4D C3D LBV sing 196 n n C4D N_D LBV sing 197 n n CAA CBA LBV sing 198 n n CAC C2C LBV sing 199 n n CAC CBC LBV sing 200 n n CAD C3D LBV sing 201 n n CBB CAB LBV sing 202 n n CBB CGB LBV sing 203 n n CBD CAD LBV doub 204 n n CGB O2B LBV sing 205 n n CGC O1C LBV sing 206 n n CGC CBC LBV sing 207 n n CHC C4B LBV sing 208 n n CHD C4C LBV sing 209 n n CMC C3C LBV sing 210 n n N_A C4A LBV sing 211 n n O_A C1A LBV doub 212 n n N_B C1B LBV sing 213 n y N_C C1C LBV sing 214 n n N_D C1D LBV sing 215 n n O_D C4D LBV doub 216 n n O1C HO1C LBV sing 217 n n C2A H2A LBV sing 218 n n O2B HO2B LBV sing 219 n n CAA HAA1 LBV sing 220 n n CAB HAB1 LBV sing 221 n n CAB HAB2 LBV sing 222 n n CAC HAC1 LBV sing 223 n n CAC HAC2 LBV sing 224 n n CAD HAD1 LBV sing 225 n n CBA HBA1 LBV sing 226 n n CBA HBA2 LBV sing 227 n n CBA HBA3 LBV sing 228 n n CBB HBB1 LBV sing 229 n n CBB HBB2 LBV sing 230 n n CBC HBC1 LBV sing 231 n n CBC HBC2 LBV sing 232 n n CBD HBD1 LBV sing 233 n n CBD HBD2 LBV sing 234 n n CHB HHB1 LBV sing 235 n n CHC HHC1 LBV sing 236 n n CHD HHD1 LBV sing 237 n n CMA HMA1 LBV sing 238 n n CMA HMA2 LBV sing 239 n n CMA HMA3 LBV sing 240 n n CMB HMB1 LBV sing 241 n n CMB HMB2 LBV sing 242 n n CMB HMB3 LBV sing 243 n n CMC HMC1 LBV sing 244 n n CMC HMC2 LBV sing 245 n n CMC HMC3 LBV sing 246 n n CMD HMD1 LBV sing 247 n n CMD HMD2 LBV sing 248 n n CMD HMD3 LBV sing 249 n n N_A HAD LBV sing 250 n n N_B HAE LBV sing 251 n n N_C HAF LBV sing 252 n n N_D HAG LBV sing 253 n n # _atom_sites.entry_id 8U63 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LBV A 1 900 900 LBV LBV . D 2 LBV B 1 900 900 LBV LBV . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1A LBV . . . C 2 191.602 147.048 196.403 1 38.14 ? C1A LBV 900 A 1 HETATM 2 C C1B LBV . . . C 2 187.66 146.041 198.184 1 40.97 ? C1B LBV 900 A 1 HETATM 3 O O1B LBV . . . C 2 182.755 146.989 202.277 1 51.19 ? O1B LBV 900 A 1 HETATM 4 C C1C LBV . . . C 2 186.492 150.256 198.53 1 45.71 ? C1C LBV 900 A 1 HETATM 5 O O1C LBV . . . C 2 181.943 152.607 200.361 1 68.37 ? O1C LBV 900 A 1 HETATM 6 C C1D LBV . . . C 2 189.506 153.522 196.865 1 48.4 ? C1D LBV 900 A 1 HETATM 7 C C2A LBV . . . C 2 191.7 145.879 195.455 1 45.03 ? C2A LBV 900 A 1 HETATM 8 C C2B LBV . . . C 2 186.587 145.521 198.956 1 38.32 ? C2B LBV 900 A 1 HETATM 9 O O2B LBV . . . C 2 183.86 145.732 203.747 1 50.63 ? O2B LBV 900 A 1 HETATM 10 C C2C LBV . . . C 2 185.76 151.425 198.316 1 46.43 ? C2C LBV 900 A 1 HETATM 11 O O2C LBV . . . C 2 183.225 154.43 200.395 1 67.75 ? O2C LBV 900 A 1 HETATM 12 C C2D LBV . . . C 2 189.546 154.535 197.912 1 53.54 ? C2D LBV 900 A 1 HETATM 13 C C3A LBV . . . C 2 190.507 145.042 195.819 1 44.47 ? C3A LBV 900 A 1 HETATM 14 C C3B LBV . . . C 2 185.842 146.585 199.408 1 36.22 ? C3B LBV 900 A 1 HETATM 15 C C3C LBV . . . C 2 186.601 152.354 197.698 1 44.68 ? C3C LBV 900 A 1 HETATM 16 C C3D LBV . . . C 2 190.077 155.667 197.389 1 51.87 ? C3D LBV 900 A 1 HETATM 17 C C4A LBV . . . C 2 189.758 145.746 196.86 1 43.25 ? C4A LBV 900 A 1 HETATM 18 C C4B LBV . . . C 2 186.45 147.779 198.917 1 39.83 ? C4B LBV 900 A 1 HETATM 19 C C4C LBV . . . C 2 187.846 151.74 197.538 1 42.86 ? C4C LBV 900 A 1 HETATM 20 C C4D LBV . . . C 2 190.4 155.411 195.967 1 53.35 ? C4D LBV 900 A 1 HETATM 21 C CAA LBV . . . C 2 190.149 143.864 195.3 1 56.3 ? CAA LBV 900 A 1 HETATM 22 C CAB LBV . . . C 2 184.618 146.535 200.251 1 45.41 ? CAB LBV 900 A 1 HETATM 23 C CAC LBV . . . C 2 184.338 151.656 198.682 1 50.67 ? CAC LBV 900 A 1 HETATM 24 C CAD LBV . . . C 2 190.301 156.921 198.074 1 57.09 ? CAD LBV 900 A 1 HETATM 25 C CBA LBV . . . C 2 190.447 143.368 193.931 1 69.52 ? CBA LBV 900 A 1 HETATM 26 C CBB LBV . . . C 2 184.944 146.228 201.71 1 47.6 ? CBB LBV 900 A 1 HETATM 27 C CBC LBV . . . C 2 184.263 152.302 200.065 1 53.43 ? CBC LBV 900 A 1 HETATM 28 C CBD LBV . . . C 2 190.426 158.123 197.51 1 57.46 ? CBD LBV 900 A 1 HETATM 29 C CGB LBV . . . C 2 183.739 146.331 202.66 1 49.03 ? CGB LBV 900 A 1 HETATM 30 C CGC LBV . . . C 2 183.036 153.202 200.295 1 67.38 ? CGC LBV 900 A 1 HETATM 31 C CHB LBV . . . C 2 188.667 145.287 197.533 1 45.27 ? CHB LBV 900 A 1 HETATM 32 C CHC LBV . . . C 2 186.04 149.07 199.125 1 47.11 ? CHC LBV 900 A 1 HETATM 33 C CHD LBV . . . C 2 189.052 152.251 196.965 1 48.37 ? CHD LBV 900 A 1 HETATM 34 C CMA LBV . . . C 2 193.043 145.174 195.655 1 53.9 ? CMA LBV 900 A 1 HETATM 35 C CMB LBV . . . C 2 186.365 144.069 199.192 1 49.07 ? CMB LBV 900 A 1 HETATM 36 C CMC LBV . . . C 2 186.189 153.73 197.3 1 49.86 ? CMC LBV 900 A 1 HETATM 37 C CMD LBV . . . C 2 189.073 154.306 199.303 1 58.36 ? CMD LBV 900 A 1 HETATM 38 N N_A LBV . . . C 2 190.462 146.884 197.162 1 38.15 ? N_A LBV 900 A 1 HETATM 39 O O_A LBV . . . C 2 192.354 147.979 196.514 1 37.72 ? O_A LBV 900 A 1 HETATM 40 N N_B LBV . . . C 2 187.549 147.379 198.182 1 41.93 ? N_B LBV 900 A 1 HETATM 41 N N_C LBV . . . C 2 187.768 150.472 198.047 1 41.55 ? N_C LBV 900 A 1 HETATM 42 N N_D LBV . . . C 2 190.032 154.108 195.73 1 48.65 ? N_D LBV 900 A 1 HETATM 43 O O_D LBV . . . C 2 190.886 156.153 195.141 1 61.39 ? O_D LBV 900 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #