data_8U65
#
_model_server_result.job_id            6XDqheJjjyMX9hRktx-Weg 
_model_server_result.datetime_utc      '2024-11-20 02:37:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8u65 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":900}' 
#
_entry.id    8U65 
#
_exptl.entry_id    8U65 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              585.67 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8U65 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8U65 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 376 B CYS 375 1_555 A SG CYS 380 B CYS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
covale ? covale1 A SG CYS 17 B CYS 16 1_555 C CBA LBV . B LBV 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.702 ? 
covale ? covale2 B SG CYS 17 A CYS 16 1_555 D CBA LBV . A LBV 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.7 ? 
#
_chem_comp.formula           'C33 H37 N4 O6 1' 
_chem_comp.formula_weight    585.67 
_chem_comp.id                LBV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '2(R),3(E)- PHYTOCHROMOBILIN' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1A N_A LBV sing 171 n n 
C1A C2A LBV sing 172 n n 
C1B C2B LBV doub 173 n y 
C1B CHB LBV sing 174 n n 
O1B CGB LBV doub 175 n n 
C1C CHC LBV doub 176 z n 
C1D CHD LBV doub 177 z n 
C2A CMA LBV sing 178 n n 
C2A C3A LBV sing 179 n n 
C2B CMB LBV sing 180 n n 
C2C C1C LBV sing 181 n n 
O2C CGC LBV doub 182 n n 
C2D C1D LBV sing 183 n n 
C2D CMD LBV sing 184 n n 
C3A CAA LBV doub 185 e n 
C3B C2B LBV sing 186 n y 
C3B CAB LBV sing 187 n n 
C3C C2C LBV doub 188 n n 
C3C C4C LBV sing 189 n n 
C3D C2D LBV doub 190 n n 
C4A C3A LBV sing 191 n n 
C4A CHB LBV doub 192 z n 
C4B C3B LBV doub 193 n y 
C4B N_B LBV sing 194 n y 
C4C N_C LBV doub 195 n n 
C4D C3D LBV sing 196 n n 
C4D N_D LBV sing 197 n n 
CAA CBA LBV sing 198 n n 
CAC C2C LBV sing 199 n n 
CAC CBC LBV sing 200 n n 
CAD C3D LBV sing 201 n n 
CBB CAB LBV sing 202 n n 
CBB CGB LBV sing 203 n n 
CBD CAD LBV doub 204 n n 
CGB O2B LBV sing 205 n n 
CGC O1C LBV sing 206 n n 
CGC CBC LBV sing 207 n n 
CHC C4B LBV sing 208 n n 
CHD C4C LBV sing 209 n n 
CMC C3C LBV sing 210 n n 
N_A C4A LBV sing 211 n n 
O_A C1A LBV doub 212 n n 
N_B C1B LBV sing 213 n y 
N_C C1C LBV sing 214 n n 
N_D C1D LBV sing 215 n n 
O_D C4D LBV doub 216 n n 
O1C HO1C LBV sing 217 n n 
C2A H2A LBV sing 218 n n 
O2B HO2B LBV sing 219 n n 
CAA HAA1 LBV sing 220 n n 
CAB HAB1 LBV sing 221 n n 
CAB HAB2 LBV sing 222 n n 
CAC HAC1 LBV sing 223 n n 
CAC HAC2 LBV sing 224 n n 
CAD HAD1 LBV sing 225 n n 
CBA HBA1 LBV sing 226 n n 
CBA HBA2 LBV sing 227 n n 
CBA HBA3 LBV sing 228 n n 
CBB HBB1 LBV sing 229 n n 
CBB HBB2 LBV sing 230 n n 
CBC HBC1 LBV sing 231 n n 
CBC HBC2 LBV sing 232 n n 
CBD HBD1 LBV sing 233 n n 
CBD HBD2 LBV sing 234 n n 
CHB HHB1 LBV sing 235 n n 
CHC HHC1 LBV sing 236 n n 
CHD HHD1 LBV sing 237 n n 
CMA HMA1 LBV sing 238 n n 
CMA HMA2 LBV sing 239 n n 
CMA HMA3 LBV sing 240 n n 
CMB HMB1 LBV sing 241 n n 
CMB HMB2 LBV sing 242 n n 
CMB HMB3 LBV sing 243 n n 
CMC HMC1 LBV sing 244 n n 
CMC HMC2 LBV sing 245 n n 
CMC HMC3 LBV sing 246 n n 
CMD HMD1 LBV sing 247 n n 
CMD HMD2 LBV sing 248 n n 
CMD HMD3 LBV sing 249 n n 
N_A HAD LBV sing 250 n n 
N_B HAE LBV sing 251 n n 
N_C HAF LBV sing 252 n n 
N_D HAG LBV sing 253 n n 
#
_atom_sites.entry_id                     8U65 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 LBV B 1 900 900 LBV LBV . 
D 2 LBV A 1 900 900 LBV LBV . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1A LBV . . . C 2 131.639 158.611 177.206 1 57.98 ? C1A LBV 900 B 1 
HETATM 2 C C1B LBV . . . C 2 133.994 162.196 178.529 1 47.12 ? C1B LBV 900 B 1 
HETATM 3 O O1B LBV . . . C 2 136.729 166.047 183.365 1 50.16 ? O1B LBV 900 B 1 
HETATM 4 C C1C LBV . . . C 2 137.666 159.909 179.455 1 45.96 ? C1C LBV 900 B 1 
HETATM 5 O O1C LBV . . . C 2 142.88 161.34 180.553 1 52.07 ? O1C LBV 900 B 1 
HETATM 6 C C1D LBV . . . C 2 137.349 155.156 179.309 1 54.66 ? C1D LBV 900 B 1 
HETATM 7 C C2A LBV . . . C 2 130.991 159.294 176.025 1 54.83 ? C2A LBV 900 B 1 
HETATM 8 C C2B LBV . . . C 2 134.437 163.409 179.124 1 46.65 ? C2B LBV 900 B 1 
HETATM 9 O O2B LBV . . . C 2 138.403 165.036 182.296 1 47.63 ? O2B LBV 900 B 1 
HETATM 10 C C2C LBV . . . C 2 138.96 159.38 179.416 1 46.91 ? C2C LBV 900 B 1 
HETATM 11 O O2C LBV . . . C 2 143.019 159.191 181.128 1 50.88 ? O2C LBV 900 B 1 
HETATM 12 C C2D LBV . . . C 2 137.996 154.436 180.397 1 57.46 ? C2D LBV 900 B 1 
HETATM 13 C C3A LBV . . . C 2 131.243 160.752 176.303 1 51.9 ? C3A LBV 900 B 1 
HETATM 14 C C3B LBV . . . C 2 135.726 163.216 179.564 1 47.19 ? C3B LBV 900 B 1 
HETATM 15 C C3C LBV . . . C 2 138.854 157.983 179.38 1 49.65 ? C3C LBV 900 B 1 
HETATM 16 C C3D LBV . . . C 2 138.382 153.218 179.938 1 56.96 ? C3D LBV 900 B 1 
HETATM 17 C C4A LBV . . . C 2 132.214 160.838 177.396 1 50.33 ? C4A LBV 900 B 1 
HETATM 18 C C4B LBV . . . C 2 136.098 161.872 179.245 1 49.9 ? C4B LBV 900 B 1 
HETATM 19 C C4C LBV . . . C 2 137.487 157.673 179.399 1 48.94 ? C4C LBV 900 B 1 
HETATM 20 C C4D LBV . . . C 2 137.98 153.123 178.512 1 55.92 ? C4D LBV 900 B 1 
HETATM 21 C CAA LBV . . . C 2 130.758 161.807 175.638 1 60.12 ? CAA LBV 900 B 1 
HETATM 22 C CAB LBV . . . C 2 136.603 164.206 180.248 1 47.66 ? CAB LBV 900 B 1 
HETATM 23 C CAC LBV . . . C 2 140.235 160.149 179.412 1 48.37 ? CAC LBV 900 B 1 
HETATM 24 C CAD LBV . . . C 2 139.062 152.185 180.691 1 56.08 ? CAD LBV 900 B 1 
HETATM 25 C CBA LBV . . . C 2 130.479 161.885 174.179 1 65.93 ? CBA LBV 900 B 1 
HETATM 26 C CBB LBV . . . C 2 136.204 164.404 181.711 1 46.58 ? CBB LBV 900 B 1 
HETATM 27 C CBC LBV . . . C 2 140.855 160.155 180.811 1 51.69 ? CBC LBV 900 B 1 
HETATM 28 C CBD LBV . . . C 2 139.567 151.041 180.222 1 54.87 ? CBD LBV 900 B 1 
HETATM 29 C CGB LBV . . . C 2 137.196 165.244 182.536 1 46.89 ? CGB LBV 900 B 1 
HETATM 30 C CGC LBV . . . C 2 142.392 160.227 180.835 1 52.98 ? CGC LBV 900 B 1 
HETATM 31 C CHB LBV . . . C 2 132.716 161.975 177.951 1 49.04 ? CHB LBV 900 B 1 
HETATM 32 C CHC LBV . . . C 2 137.302 161.263 179.502 1 49.37 ? CHC LBV 900 B 1 
HETATM 33 C CHD LBV . . . C 2 136.829 156.402 179.381 1 54.5 ? CHD LBV 900 B 1 
HETATM 34 C CMA LBV . . . C 2 129.511 158.904 175.968 1 57.72 ? CMA LBV 900 B 1 
HETATM 35 C CMB LBV . . . C 2 133.599 164.637 179.22 1 50.3 ? CMB LBV 900 B 1 
HETATM 36 C CMC LBV . . . C 2 140.018 157.05 179.329 1 49.04 ? CMC LBV 900 B 1 
HETATM 37 C CMD LBV . . . C 2 138.166 155.017 181.754 1 56.83 ? CMD LBV 900 B 1 
HETATM 38 N N_A LBV . . . C 2 132.316 159.576 177.929 1 55.32 ? N_A LBV 900 B 1 
HETATM 39 O O_A LBV . . . C 2 131.601 157.446 177.505 1 59.52 ? O_A LBV 900 B 1 
HETATM 40 N N_B LBV . . . C 2 135.002 161.306 178.616 1 49.34 ? N_B LBV 900 B 1 
HETATM 41 N N_C LBV . . . C 2 136.782 158.846 179.445 1 44.68 ? N_C LBV 900 B 1 
HETATM 42 N N_D LBV . . . C 2 137.368 154.319 178.209 1 50.51 ? N_D LBV 900 B 1 
HETATM 43 O O_D LBV . . . C 2 138.13 152.211 177.726 1 59.64 ? O_D LBV 900 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    48 
_model_server_stats.query_time_ms           394 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           43 
#