data_8U65
#
_model_server_result.job_id            YjuFXElNHk5IAbjMNpgdvw 
_model_server_result.datetime_utc      '2024-11-20 02:21:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8u65 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":900}' 
#
_entry.id    8U65 
#
_exptl.entry_id    8U65 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              585.67 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8U65 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8U65 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 376 B CYS 375 1_555 A SG CYS 380 B CYS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
covale ? covale1 A SG CYS 17 B CYS 16 1_555 C CBA LBV . B LBV 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.702 ? 
covale ? covale2 B SG CYS 17 A CYS 16 1_555 D CBA LBV . A LBV 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.7 ? 
#
_chem_comp.formula           'C33 H37 N4 O6 1' 
_chem_comp.formula_weight    585.67 
_chem_comp.id                LBV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '2(R),3(E)- PHYTOCHROMOBILIN' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1A N_A LBV sing 171 n n 
C1A C2A LBV sing 172 n n 
C1B C2B LBV doub 173 n y 
C1B CHB LBV sing 174 n n 
O1B CGB LBV doub 175 n n 
C1C CHC LBV doub 176 z n 
C1D CHD LBV doub 177 z n 
C2A CMA LBV sing 178 n n 
C2A C3A LBV sing 179 n n 
C2B CMB LBV sing 180 n n 
C2C C1C LBV sing 181 n n 
O2C CGC LBV doub 182 n n 
C2D C1D LBV sing 183 n n 
C2D CMD LBV sing 184 n n 
C3A CAA LBV doub 185 e n 
C3B C2B LBV sing 186 n y 
C3B CAB LBV sing 187 n n 
C3C C2C LBV doub 188 n n 
C3C C4C LBV sing 189 n n 
C3D C2D LBV doub 190 n n 
C4A C3A LBV sing 191 n n 
C4A CHB LBV doub 192 z n 
C4B C3B LBV doub 193 n y 
C4B N_B LBV sing 194 n y 
C4C N_C LBV doub 195 n n 
C4D C3D LBV sing 196 n n 
C4D N_D LBV sing 197 n n 
CAA CBA LBV sing 198 n n 
CAC C2C LBV sing 199 n n 
CAC CBC LBV sing 200 n n 
CAD C3D LBV sing 201 n n 
CBB CAB LBV sing 202 n n 
CBB CGB LBV sing 203 n n 
CBD CAD LBV doub 204 n n 
CGB O2B LBV sing 205 n n 
CGC O1C LBV sing 206 n n 
CGC CBC LBV sing 207 n n 
CHC C4B LBV sing 208 n n 
CHD C4C LBV sing 209 n n 
CMC C3C LBV sing 210 n n 
N_A C4A LBV sing 211 n n 
O_A C1A LBV doub 212 n n 
N_B C1B LBV sing 213 n y 
N_C C1C LBV sing 214 n n 
N_D C1D LBV sing 215 n n 
O_D C4D LBV doub 216 n n 
O1C HO1C LBV sing 217 n n 
C2A H2A LBV sing 218 n n 
O2B HO2B LBV sing 219 n n 
CAA HAA1 LBV sing 220 n n 
CAB HAB1 LBV sing 221 n n 
CAB HAB2 LBV sing 222 n n 
CAC HAC1 LBV sing 223 n n 
CAC HAC2 LBV sing 224 n n 
CAD HAD1 LBV sing 225 n n 
CBA HBA1 LBV sing 226 n n 
CBA HBA2 LBV sing 227 n n 
CBA HBA3 LBV sing 228 n n 
CBB HBB1 LBV sing 229 n n 
CBB HBB2 LBV sing 230 n n 
CBC HBC1 LBV sing 231 n n 
CBC HBC2 LBV sing 232 n n 
CBD HBD1 LBV sing 233 n n 
CBD HBD2 LBV sing 234 n n 
CHB HHB1 LBV sing 235 n n 
CHC HHC1 LBV sing 236 n n 
CHD HHD1 LBV sing 237 n n 
CMA HMA1 LBV sing 238 n n 
CMA HMA2 LBV sing 239 n n 
CMA HMA3 LBV sing 240 n n 
CMB HMB1 LBV sing 241 n n 
CMB HMB2 LBV sing 242 n n 
CMB HMB3 LBV sing 243 n n 
CMC HMC1 LBV sing 244 n n 
CMC HMC2 LBV sing 245 n n 
CMC HMC3 LBV sing 246 n n 
CMD HMD1 LBV sing 247 n n 
CMD HMD2 LBV sing 248 n n 
CMD HMD3 LBV sing 249 n n 
N_A HAD LBV sing 250 n n 
N_B HAE LBV sing 251 n n 
N_C HAF LBV sing 252 n n 
N_D HAG LBV sing 253 n n 
#
_atom_sites.entry_id                     8U65 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 LBV B 1 900 900 LBV LBV . 
D 2 LBV A 1 900 900 LBV LBV . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1A LBV . . . D 2 196.964 170.009 177.139 1 65.06 ? C1A LBV 900 A 1 
HETATM 2 C C1B LBV . . . D 2 194.56 166.421 178.582 1 57.63 ? C1B LBV 900 A 1 
HETATM 3 O O1B LBV . . . D 2 190.323 162.804 182.079 1 56.94 ? O1B LBV 900 A 1 
HETATM 4 C C1C LBV . . . D 2 190.705 168.503 179.138 1 58.49 ? C1C LBV 900 A 1 
HETATM 5 O O1C LBV . . . D 2 185.948 169.374 180.72 1 57.74 ? O1C LBV 900 A 1 
HETATM 6 C C1D LBV . . . D 2 190.827 173.261 178.915 1 63.88 ? C1D LBV 900 A 1 
HETATM 7 C C2A LBV . . . D 2 197.21 169.308 175.824 1 67.47 ? C2A LBV 900 A 1 
HETATM 8 C C2B LBV . . . D 2 194.142 165.2 179.178 1 55.23 ? C2B LBV 900 A 1 
HETATM 9 O O2B LBV . . . D 2 192.219 162.44 183.192 1 53.4 ? O2B LBV 900 A 1 
HETATM 10 C C2C LBV . . . D 2 189.402 168.985 179.3 1 59.38 ? C2C LBV 900 A 1 
HETATM 11 O O2C LBV . . . D 2 186.152 168.326 182.677 1 60.54 ? O2C LBV 900 A 1 
HETATM 12 C C2D LBV . . . D 2 190.401 173.809 180.197 1 65.73 ? C2D LBV 900 A 1 
HETATM 13 C C3A LBV . . . D 2 197.049 167.857 176.201 1 63.2 ? C3A LBV 900 A 1 
HETATM 14 C C3B LBV . . . D 2 192.806 165.317 179.486 1 56.8 ? C3B LBV 900 A 1 
HETATM 15 C C3C LBV . . . D 2 189.438 170.377 179.16 1 58.58 ? C3C LBV 900 A 1 
HETATM 16 C C3D LBV . . . D 2 189.938 175.07 179.994 1 63.63 ? C3D LBV 900 A 1 
HETATM 17 C C4A LBV . . . D 2 196.302 167.827 177.46 1 59.66 ? C4A LBV 900 A 1 
HETATM 18 C C4B LBV . . . D 2 192.382 166.624 179.085 1 58.42 ? C4B LBV 900 A 1 
HETATM 19 C C4C LBV . . . D 2 190.769 170.737 178.909 1 60.5 ? C4C LBV 900 A 1 
HETATM 20 C C4D LBV . . . D 2 190.056 175.371 178.547 1 63.33 ? C4D LBV 900 A 1 
HETATM 21 C CAA LBV . . . D 2 197.702 166.799 175.703 1 68.99 ? CAA LBV 900 A 1 
HETATM 22 C CAB LBV . . . D 2 191.939 164.29 180.128 1 58.93 ? CAB LBV 900 A 1 
HETATM 23 C CAC LBV . . . D 2 188.184 168.176 179.579 1 58.3 ? CAC LBV 900 A 1 
HETATM 24 C CAD LBV . . . D 2 189.417 175.975 180.996 1 63.8 ? CAD LBV 900 A 1 
HETATM 25 C CBA LBV . . . D 2 197.811 166.397 174.275 1 77.71 ? CBA LBV 900 A 1 
HETATM 26 C CBB LBV . . . D 2 192.202 164.214 181.633 1 56.72 ? CBB LBV 900 A 1 
HETATM 27 C CBC LBV . . . D 2 187.925 168.129 181.087 1 59.48 ? CBC LBV 900 A 1 
HETATM 28 C CBD LBV . . . D 2 188.793 177.139 180.79 1 63.02 ? CBD LBV 900 A 1 
HETATM 29 C CGB LBV . . . D 2 191.51 163.049 182.365 1 55.05 ? CGB LBV 900 A 1 
HETATM 30 C CGC LBV . . . D 2 186.549 168.653 181.542 1 61.17 ? CGC LBV 900 A 1 
HETATM 31 C CHB LBV . . . D 2 195.867 166.716 178.117 1 59.87 ? CHB LBV 900 A 1 
HETATM 32 C CHC LBV . . . D 2 191.126 167.166 179.203 1 58.16 ? CHC LBV 900 A 1 
HETATM 33 C CHD LBV . . . D 2 191.346 172.03 178.694 1 64.8 ? CHD LBV 900 A 1 
HETATM 34 C CMA LBV . . . D 2 198.59 169.705 175.29 1 68.83 ? CMA LBV 900 A 1 
HETATM 35 C CMB LBV . . . D 2 195.042 164.035 179.397 1 56.68 ? CMB LBV 900 A 1 
HETATM 36 C CMC LBV . . . D 2 188.24 171.26 179.263 1 55.78 ? CMC LBV 900 A 1 
HETATM 37 C CMD LBV . . . D 2 190.493 173.05 181.472 1 66.19 ? CMD LBV 900 A 1 
HETATM 38 N N_A LBV . . . D 2 196.439 169.076 178.014 1 59.15 ? N_A LBV 900 A 1 
HETATM 39 O O_A LBV . . . D 2 197.168 171.162 177.421 1 67.13 ? O_A LBV 900 A 1 
HETATM 40 N N_B LBV . . . D 2 193.495 167.242 178.542 1 61.09 ? N_B LBV 900 A 1 
HETATM 41 N N_C LBV . . . D 2 191.525 169.594 178.9 1 58.59 ? N_C LBV 900 A 1 
HETATM 42 N N_D LBV . . . D 2 190.595 174.242 177.97 1 60.86 ? N_D LBV 900 A 1 
HETATM 43 O O_D LBV . . . D 2 189.759 176.378 177.94 1 67.62 ? O_D LBV 900 A 1 
#
_model_server_stats.io_time_ms              101 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           332 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           43 
#