data_8U69 # _model_server_result.job_id Bn7552v7WQmEvyf3lnTbkg _model_server_result.datetime_utc '2025-01-10 14:16:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u69 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 8U69 # _exptl.entry_id 8U69 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 452.675 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-chloro-5-{4-chloro-2-[2-(5-chloro-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}benzonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.43 _cell.angle_gamma 90 _cell.entry_id 8U69 _cell.length_a 222.739 _cell.length_b 68.211 _cell.length_c 103.509 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8U69 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H12 Cl3 N3 O4' _chem_comp.formula_weight 452.675 _chem_comp.id VQ0 _chem_comp.mon_nstd_flag . _chem_comp.name 3-chloro-5-{4-chloro-2-[2-(5-chloro-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}benzonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL2 C10 VQ0 sing 376 n n C10 C11 VQ0 doub 377 n y C10 C9 VQ0 sing 378 n y C11 C12 VQ0 sing 379 n y C9 C8 VQ0 doub 380 n y O4 C18 VQ0 doub 381 n n C13 O2 VQ0 sing 382 n n C13 C14 VQ0 sing 383 n n C12 O2 VQ0 sing 384 n n C12 C7 VQ0 doub 385 n y C8 C7 VQ0 sing 386 n y C18 N3 VQ0 sing 387 n n C18 N2 VQ0 sing 388 n n C7 O1 VQ0 sing 389 n n N3 C17 VQ0 sing 390 n n C14 N2 VQ0 sing 391 n n N2 C15 VQ0 sing 392 n n C17 O3 VQ0 doub 393 n n C17 C16 VQ0 sing 394 n n O1 C6 VQ0 sing 395 n n C15 C16 VQ0 doub 396 n n C16 CL3 VQ0 sing 397 n n C5 C6 VQ0 doub 398 n y C5 C4 VQ0 sing 399 n y C6 C19 VQ0 sing 400 n y CL1 C4 VQ0 sing 401 n n C4 C3 VQ0 doub 402 n y C19 C2 VQ0 doub 403 n y C3 C2 VQ0 sing 404 n y C2 C1 VQ0 sing 405 n n C1 N1 VQ0 trip 406 n n C11 H1 VQ0 sing 407 n n C9 H2 VQ0 sing 408 n n C8 H3 VQ0 sing 409 n n C3 H4 VQ0 sing 410 n n C5 H5 VQ0 sing 411 n n N3 H6 VQ0 sing 412 n n C13 H7 VQ0 sing 413 n n C13 H8 VQ0 sing 414 n n C15 H9 VQ0 sing 415 n n C14 H10 VQ0 sing 416 n n C14 H11 VQ0 sing 417 n n C19 H12 VQ0 sing 418 n n # _atom_sites.entry_id 8U69 _atom_sites.fract_transf_matrix[1][1] 0.00449 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00141 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01466 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010126 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 VQ0 A 1 601 601 VQ0 J34 . D 4 HOH A 1 701 1 HOH HOH . D 4 HOH A 2 702 5 HOH HOH . D 4 HOH A 3 703 6 HOH HOH . D 4 HOH A 4 704 26 HOH HOH . D 4 HOH A 5 705 8 HOH HOH . D 4 HOH A 6 706 25 HOH HOH . D 4 HOH A 7 707 44 HOH HOH . D 4 HOH A 8 708 16 HOH HOH . D 4 HOH A 9 709 47 HOH HOH . D 4 HOH A 10 710 28 HOH HOH . D 4 HOH A 11 711 23 HOH HOH . D 4 HOH A 12 712 15 HOH HOH . D 4 HOH A 13 713 41 HOH HOH . D 4 HOH A 14 714 22 HOH HOH . D 4 HOH A 15 715 30 HOH HOH . D 4 HOH A 16 716 31 HOH HOH . D 4 HOH A 17 717 45 HOH HOH . D 4 HOH A 18 718 27 HOH HOH . D 4 HOH A 19 719 29 HOH HOH . D 4 HOH A 20 720 32 HOH HOH . D 4 HOH A 21 721 46 HOH HOH . E 4 HOH B 1 501 13 HOH HOH . E 4 HOH B 2 502 4 HOH HOH . E 4 HOH B 3 503 11 HOH HOH . E 4 HOH B 4 504 14 HOH HOH . E 4 HOH B 5 505 9 HOH HOH . E 4 HOH B 6 506 2 HOH HOH . E 4 HOH B 7 507 38 HOH HOH . E 4 HOH B 8 508 19 HOH HOH . E 4 HOH B 9 509 12 HOH HOH . E 4 HOH B 10 510 20 HOH HOH . E 4 HOH B 11 511 39 HOH HOH . E 4 HOH B 12 512 17 HOH HOH . E 4 HOH B 13 513 3 HOH HOH . E 4 HOH B 14 514 18 HOH HOH . E 4 HOH B 15 515 7 HOH HOH . E 4 HOH B 16 516 10 HOH HOH . E 4 HOH B 17 517 40 HOH HOH . E 4 HOH B 18 518 21 HOH HOH . E 4 HOH B 19 519 33 HOH HOH . E 4 HOH B 20 520 37 HOH HOH . E 4 HOH B 21 521 42 HOH HOH . E 4 HOH B 22 522 35 HOH HOH . E 4 HOH B 23 523 36 HOH HOH . E 4 HOH B 24 524 48 HOH HOH . E 4 HOH B 25 525 34 HOH HOH . E 4 HOH B 26 526 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 VQ0 . . . C 3 460.239 2.712 119.044 1 83.06 ? C12 VQ0 601 A 1 HETATM 2 N N2 VQ0 . . . C 3 458.276 -0.534 120.286 1 79.45 ? N2 VQ0 601 A 1 HETATM 3 C C11 VQ0 . . . C 3 460.074 3.164 117.753 1 80.44 ? C11 VQ0 601 A 1 HETATM 4 C C10 VQ0 . . . C 3 461 4.042 117.229 1 76.9 ? C10 VQ0 601 A 1 HETATM 5 C C9 VQ0 . . . C 3 462.066 4.491 117.973 1 70.74 ? C9 VQ0 601 A 1 HETATM 6 C C8 VQ0 . . . C 3 462.203 4.073 119.281 1 77.61 ? C8 VQ0 601 A 1 HETATM 7 C C1 VQ0 . . . C 3 462.739 3.409 125.702 1 79.17 ? C1 VQ0 601 A 1 HETATM 8 C C2 VQ0 . . . C 3 462.121 3.892 124.493 1 76.67 ? C2 VQ0 601 A 1 HETATM 9 N N1 VQ0 . . . C 3 463.184 3.012 126.678 1 84.6 ? N1 VQ0 601 A 1 HETATM 10 C C3 VQ0 . . . C 3 461.653 5.204 124.424 1 73.76 ? C3 VQ0 601 A 1 HETATM 11 C C7 VQ0 . . . C 3 461.33 3.148 119.794 1 78.87 ? C7 VQ0 601 A 1 HETATM 12 O O4 VQ0 . . . C 3 457.963 -1.578 118.279 1 87.01 ? O4 VQ0 601 A 1 HETATM 13 C C4 VQ0 . . . C 3 461.074 5.64 123.246 1 81.25 ? C4 VQ0 601 A 1 HETATM 14 C C5 VQ0 . . . C 3 460.992 4.833 122.131 1 80.27 ? C5 VQ0 601 A 1 HETATM 15 C C6 VQ0 . . . C 3 461.45 3.529 122.212 1 74.14 ? C6 VQ0 601 A 1 HETATM 16 O O3 VQ0 . . . C 3 460.638 -3.594 121.32 1 92.34 ? O3 VQ0 601 A 1 HETATM 17 O O2 VQ0 . . . C 3 459.364 1.861 119.656 1 83.88 ? O2 VQ0 601 A 1 HETATM 18 O O1 VQ0 . . . C 3 461.379 2.682 121.109 1 70.65 ? O1 VQ0 601 A 1 HETATM 19 N N3 VQ0 . . . C 3 459.3 -2.574 119.818 1 82 ? N3 VQ0 601 A 1 HETATM 20 C C13 VQ0 . . . C 3 458.163 1.524 118.958 1 81.5 ? C13 VQ0 601 A 1 HETATM 21 C C18 VQ0 . . . C 3 458.48 -1.562 119.384 1 78.24 ? C18 VQ0 601 A 1 HETATM 22 C C17 VQ0 . . . C 3 459.916 -2.617 121.049 1 79.74 ? C17 VQ0 601 A 1 HETATM 23 C C16 VQ0 . . . C 3 459.678 -1.553 121.913 1 83.29 ? C16 VQ0 601 A 1 HETATM 24 C C15 VQ0 . . . C 3 458.868 -0.526 121.516 1 76.85 ? C15 VQ0 601 A 1 HETATM 25 C C14 VQ0 . . . C 3 457.416 0.583 119.866 1 74.6 ? C14 VQ0 601 A 1 HETATM 26 C C19 VQ0 . . . C 3 462.04 3.068 123.374 1 78.21 ? C19 VQ0 601 A 1 HETATM 27 CL CL1 VQ0 . . . C 3 460.45 7.259 123.118 1 80.15 ? CL1 VQ0 601 A 1 HETATM 28 CL CL2 VQ0 . . . C 3 460.809 4.593 115.59 1 84.55 ? CL2 VQ0 601 A 1 HETATM 29 CL CL3 VQ0 . . . C 3 460.428 -1.565 123.473 1 94.89 ? CL3 VQ0 601 A 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #