data_8U6G
#
_model_server_result.job_id            1fIHD8bah0s_wdhW8c08mQ 
_model_server_result.datetime_utc      '2025-01-10 13:48:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8u6g 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
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_entry.id    8U6G 
#
_exptl.entry_id    8U6G 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              496.342 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-chloro-5-{4-chloro-2-[2-(2-oxo-3-propanoyl-2,3-dihydro-1H-benzimidazol-1-yl)ethoxy]phenoxy}benzonitrile 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.42 
_cell.angle_gamma         90 
_cell.entry_id            8U6G 
_cell.length_a            224.206 
_cell.length_b            68.746 
_cell.length_c            104.123 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8U6G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C25 H19 Cl2 N3 O4' 
_chem_comp.formula_weight    496.342 
_chem_comp.id                VVE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-chloro-5-{4-chloro-2-[2-(2-oxo-3-propanoyl-2,3-dihydro-1H-benzimidazol-1-yl)ethoxy]phenoxy}benzonitrile 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CL1 C9 VVE sing 376 n n 
C1 C2 VVE sing 377 n n 
C9 C8 VVE doub 378 n y 
C9 C10 VVE sing 379 n y 
C2 C3 VVE sing 380 n n 
C8 C7 VVE sing 381 n y 
C10 C11 VVE doub 382 n y 
O2 C4 VVE doub 383 n n 
O1 C3 VVE doub 384 n n 
C3 N1 VVE sing 385 n n 
C4 N1 VVE sing 386 n n 
C4 N2 VVE sing 387 n n 
C6 O3 VVE sing 388 n n 
C6 C5 VVE sing 389 n n 
N1 C25 VVE sing 390 n n 
C7 O3 VVE sing 391 n n 
C7 C12 VVE doub 392 n y 
C11 C12 VVE sing 393 n y 
C12 O4 VVE sing 394 n n 
N2 C5 VVE sing 395 n n 
N2 C20 VVE sing 396 n n 
C25 C20 VVE doub 397 n y 
C25 C24 VVE sing 398 n y 
C20 C21 VVE sing 399 n y 
C24 C23 VVE doub 400 n y 
O4 C13 VVE sing 401 n n 
C21 C22 VVE doub 402 n y 
C14 C13 VVE doub 403 n y 
C14 C15 VVE sing 404 n y 
C23 C22 VVE sing 405 n y 
C13 C19 VVE sing 406 n y 
CL2 C15 VVE sing 407 n n 
C15 C16 VVE doub 408 n y 
C19 C17 VVE doub 409 n y 
C16 C17 VVE sing 410 n y 
C17 C18 VVE sing 411 n n 
C18 N3 VVE trip 412 n n 
C10 H1 VVE sing 413 n n 
C11 H2 VVE sing 414 n n 
C14 H3 VVE sing 415 n n 
C16 H4 VVE sing 416 n n 
C1 H5 VVE sing 417 n n 
C1 H6 VVE sing 418 n n 
C1 H7 VVE sing 419 n n 
C2 H8 VVE sing 420 n n 
C2 H9 VVE sing 421 n n 
C5 H10 VVE sing 422 n n 
C5 H11 VVE sing 423 n n 
C6 H12 VVE sing 424 n n 
C6 H13 VVE sing 425 n n 
C8 H14 VVE sing 426 n n 
C19 H15 VVE sing 427 n n 
C21 H16 VVE sing 428 n n 
C22 H17 VVE sing 429 n n 
C23 H18 VVE sing 430 n n 
C24 H19 VVE sing 431 n n 
#
_atom_sites.entry_id                     8U6G 
_atom_sites.fract_transf_matrix[1][1]    0.00446 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001399 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014546 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010066 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 VVE A 1 601 601 VVE J44 . 
D 4 MG A 1 602 1 MG MG . 
E 4 MG A 1 603 2 MG MG . 
F 5 HOH A 1 701 9 HOH HOH . 
F 5 HOH A 2 702 3 HOH HOH . 
F 5 HOH A 3 703 2 HOH HOH . 
F 5 HOH A 4 704 7 HOH HOH . 
F 5 HOH A 5 705 4 HOH HOH . 
F 5 HOH A 6 706 5 HOH HOH . 
F 5 HOH A 7 707 1 HOH HOH . 
G 5 HOH B 1 501 6 HOH HOH . 
G 5 HOH B 2 502 10 HOH HOH . 
G 5 HOH B 3 503 11 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 VVE . . . C 3 47.457 -5.49 19.895 1 83.48 ? C10 VVE 601 A 1 
HETATM 2 C C15 VVE . . . C 3 46.405 -4.192 25.164 1 129.57 ? C15 VVE 601 A 1 
HETATM 3 C C11 VVE . . . C 3 47.592 -5.915 21.202 1 91.14 ? C11 VVE 601 A 1 
HETATM 4 C C12 VVE . . . C 3 46.598 -6.665 21.78 1 81.8 ? C12 VVE 601 A 1 
HETATM 5 C C14 VVE . . . C 3 46.269 -5.039 24.091 1 115.08 ? C14 VVE 601 A 1 
HETATM 6 C C16 VVE . . . C 3 47.072 -4.553 26.316 1 122.32 ? C16 VVE 601 A 1 
HETATM 7 C C18 VVE . . . C 3 48.317 -6.222 27.602 1 111.42 ? C18 VVE 601 A 1 
HETATM 8 C C1 VVE . . . C 3 42.145 -14.786 18.43 1 169.73 ? C1 VVE 601 A 1 
HETATM 9 C C2 VVE . . . C 3 42.708 -13.805 19.447 1 170.86 ? C2 VVE 601 A 1 
HETATM 10 C C3 VVE . . . C 3 43.983 -13.678 20.211 1 166.99 ? C3 VVE 601 A 1 
HETATM 11 O O1 VVE . . . C 3 44.953 -14.431 20.115 1 135.2 ? O1 VVE 601 A 1 
HETATM 12 N N1 VVE . . . C 3 44.015 -12.514 21.067 1 136.96 ? N1 VVE 601 A 1 
HETATM 13 C C4 VVE . . . C 3 43.158 -11.429 20.875 1 115.11 ? C4 VVE 601 A 1 
HETATM 14 O O2 VVE . . . C 3 42.402 -11.228 19.941 1 117.81 ? O2 VVE 601 A 1 
HETATM 15 N N2 VVE . . . C 3 43.37 -10.577 21.912 1 99.92 ? N2 VVE 601 A 1 
HETATM 16 C C5 VVE . . . C 3 42.713 -9.28 21.93 1 108.97 ? C5 VVE 601 A 1 
HETATM 17 C C6 VVE . . . C 3 43.418 -8.317 20.991 1 107.08 ? C6 VVE 601 A 1 
HETATM 18 O O3 VVE . . . C 3 44.511 -7.75 21.715 1 97.43 ? O3 VVE 601 A 1 
HETATM 19 C C7 VVE . . . C 3 45.444 -6.993 21.075 1 82.14 ? C7 VVE 601 A 1 
HETATM 20 C C8 VVE . . . C 3 45.312 -6.589 19.769 1 88.73 ? C8 VVE 601 A 1 
HETATM 21 C C9 VVE . . . C 3 46.318 -5.835 19.197 1 90.53 ? C9 VVE 601 A 1 
HETATM 22 CL CL1 VVE . . . C 3 46.105 -5.329 17.54 1 94.18 ? CL1 VVE 601 A 1 
HETATM 23 O O4 VVE . . . C 3 46.665 -7.141 23.085 1 99.37 ? O4 VVE 601 A 1 
HETATM 24 C C13 VVE . . . C 3 46.821 -6.3 24.174 1 110.58 ? C13 VVE 601 A 1 
HETATM 25 CL CL2 VVE . . . C 3 45.681 -2.621 25.053 1 115.17 ? CL2 VVE 601 A 1 
HETATM 26 C C17 VVE . . . C 3 47.628 -5.822 26.401 1 104.82 ? C17 VVE 601 A 1 
HETATM 27 N N3 VVE . . . C 3 48.829 -6.517 28.586 1 116.12 ? N3 VVE 601 A 1 
HETATM 28 C C19 VVE . . . C 3 47.493 -6.697 25.324 1 110.27 ? C19 VVE 601 A 1 
HETATM 29 C C20 VVE . . . C 3 44.31 -11.085 22.791 1 91.3 ? C20 VVE 601 A 1 
HETATM 30 C C21 VVE . . . C 3 44.824 -10.566 23.965 1 95.81 ? C21 VVE 601 A 1 
HETATM 31 C C22 VVE . . . C 3 45.766 -11.335 24.635 1 102 ? C22 VVE 601 A 1 
HETATM 32 C C23 VVE . . . C 3 46.155 -12.572 24.146 1 109.81 ? C23 VVE 601 A 1 
HETATM 33 C C24 VVE . . . C 3 45.64 -13.09 22.961 1 120.17 ? C24 VVE 601 A 1 
HETATM 34 C C25 VVE . . . C 3 44.708 -12.324 22.286 1 109.62 ? C25 VVE 601 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           351 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           34 
#