data_8U6H # _model_server_result.job_id qP5maIoXGunvYSBnr0Q5VQ _model_server_result.datetime_utc '2024-12-02 07:24:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u6h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":601}' # _entry.id 8U6H # _exptl.entry_id 8U6H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 496.342 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-chloro-5-{4-chloro-2-[2-(2-oxo-3-propanoyl-2,3-dihydro-1H-benzimidazol-1-yl)ethoxy]phenoxy}benzonitrile _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.51 _cell.angle_gamma 90 _cell.entry_id 8U6H _cell.length_a 112.404 _cell.length_b 73.185 _cell.length_c 171.583 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8U6H _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,I,J 1 1 C,D,H,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 104 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 102 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id VVE _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id VVE _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.413 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C25 H19 Cl2 N3 O4' _chem_comp.formula_weight 496.342 _chem_comp.id VVE _chem_comp.mon_nstd_flag . _chem_comp.name 3-chloro-5-{4-chloro-2-[2-(2-oxo-3-propanoyl-2,3-dihydro-1H-benzimidazol-1-yl)ethoxy]phenoxy}benzonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C9 VVE sing 380 n n C1 C2 VVE sing 381 n n C9 C8 VVE doub 382 n y C9 C10 VVE sing 383 n y C2 C3 VVE sing 384 n n C8 C7 VVE sing 385 n y C10 C11 VVE doub 386 n y O2 C4 VVE doub 387 n n O1 C3 VVE doub 388 n n C3 N1 VVE sing 389 n n C4 N1 VVE sing 390 n n C4 N2 VVE sing 391 n n C6 O3 VVE sing 392 n n C6 C5 VVE sing 393 n n N1 C25 VVE sing 394 n n C7 O3 VVE sing 395 n n C7 C12 VVE doub 396 n y C11 C12 VVE sing 397 n y C12 O4 VVE sing 398 n n N2 C5 VVE sing 399 n n N2 C20 VVE sing 400 n n C25 C20 VVE doub 401 n y C25 C24 VVE sing 402 n y C20 C21 VVE sing 403 n y C24 C23 VVE doub 404 n y O4 C13 VVE sing 405 n n C21 C22 VVE doub 406 n y C14 C13 VVE doub 407 n y C14 C15 VVE sing 408 n y C23 C22 VVE sing 409 n y C13 C19 VVE sing 410 n y CL2 C15 VVE sing 411 n n C15 C16 VVE doub 412 n y C19 C17 VVE doub 413 n y C16 C17 VVE sing 414 n y C17 C18 VVE sing 415 n n C18 N3 VVE trip 416 n n C10 H1 VVE sing 417 n n C11 H2 VVE sing 418 n n C14 H3 VVE sing 419 n n C16 H4 VVE sing 420 n n C1 H5 VVE sing 421 n n C1 H6 VVE sing 422 n n C1 H7 VVE sing 423 n n C2 H8 VVE sing 424 n n C2 H9 VVE sing 425 n n C5 H10 VVE sing 426 n n C5 H11 VVE sing 427 n n C6 H12 VVE sing 428 n n C6 H13 VVE sing 429 n n C8 H14 VVE sing 430 n n C19 H15 VVE sing 431 n n C21 H16 VVE sing 432 n n C22 H17 VVE sing 433 n n C23 H18 VVE sing 434 n n C24 H19 VVE sing 435 n n # _atom_sites.entry_id 8U6H _atom_sites.fract_transf_matrix[1][1] 0.008896 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001172 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013664 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005878 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 VVE A 1 601 601 VVE VVE . F 4 PO4 A 1 602 1 PO4 PO4 . G 4 PO4 B 1 501 2 PO4 PO4 . H 3 VVE C 1 601 601 VVE VVE . I 5 HOH A 1 701 1 HOH HOH . I 5 HOH A 2 702 2 HOH HOH . I 5 HOH A 3 703 9 HOH HOH . I 5 HOH A 4 704 11 HOH HOH . I 5 HOH A 5 705 12 HOH HOH . I 5 HOH A 6 706 13 HOH HOH . I 5 HOH A 7 707 6 HOH HOH . I 5 HOH A 8 708 8 HOH HOH . I 5 HOH A 9 709 14 HOH HOH . J 5 HOH B 1 601 16 HOH HOH . J 5 HOH B 2 602 10 HOH HOH . J 5 HOH B 3 603 5 HOH HOH . J 5 HOH B 4 604 15 HOH HOH . J 5 HOH B 5 605 3 HOH HOH . J 5 HOH B 6 606 4 HOH HOH . K 5 HOH C 1 701 17 HOH HOH . K 5 HOH C 2 702 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 VVE . . . H 3 32.853 -7.858 52.907 1 0.5 ? C10 VVE 601 C 1 HETATM 2 C C15 VVE . . . H 3 37.328 -9.299 57.797 1 0.5 ? C15 VVE 601 C 1 HETATM 3 C C11 VVE . . . H 3 33.964 -8.446 53.468 1 0.5 ? C11 VVE 601 C 1 HETATM 4 C C12 VVE . . . H 3 33.819 -9.267 54.552 1 0.5 ? C12 VVE 601 C 1 HETATM 5 C C14 VVE . . . H 3 36.651 -9.886 56.752 1 0.5 ? C14 VVE 601 C 1 HETATM 6 C C16 VVE . . . H 3 36.96 -8.074 58.309 1 0.5 ? C16 VVE 601 C 1 HETATM 7 C C18 VVE . . . H 3 35.462 -6.132 58.264 1 0.5 ? C18 VVE 601 C 1 HETATM 8 C C1 VVE . . . H 3 29.382 -16.743 56.391 1 0.5 ? C1 VVE 601 C 1 HETATM 9 C C2 VVE . . . H 3 30.361 -17.263 57.066 1 0.5 ? C2 VVE 601 C 1 HETATM 10 C C3 VVE . . . H 3 31.787 -17.027 56.783 1 0.5 ? C3 VVE 601 C 1 HETATM 11 O O1 VVE . . . H 3 32.642 -17.893 56.807 1 0.5 ? O1 VVE 601 C 1 HETATM 12 N N1 VVE . . . H 3 32.17 -15.695 56.46 1 0.5 ? N1 VVE 601 C 1 HETATM 13 C C4 VVE . . . H 3 31.328 -14.718 55.944 1 0.5 ? C4 VVE 601 C 1 HETATM 14 O O2 VVE . . . H 3 30.145 -14.842 55.69 1 0.5 ? O2 VVE 601 C 1 HETATM 15 N N2 VVE . . . H 3 32.09 -13.584 55.78 1 0.5 ? N2 VVE 601 C 1 HETATM 16 C C5 VVE . . . H 3 31.602 -12.314 55.253 1 0.5 ? C5 VVE 601 C 1 HETATM 17 C C6 VVE . . . H 3 31.454 -11.272 56.333 1 0.5 ? C6 VVE 601 C 1 HETATM 18 O O3 VVE . . . H 3 32.523 -10.336 56.201 1 0.5 ? O3 VVE 601 C 1 HETATM 19 C C7 VVE . . . H 3 32.565 -9.509 55.113 1 0.5 ? C7 VVE 601 C 1 HETATM 20 C C8 VVE . . . H 3 31.452 -8.92 54.552 1 0.5 ? C8 VVE 601 C 1 HETATM 21 C C9 VVE . . . H 3 31.618 -8.102 53.454 1 0.5 ? C9 VVE 601 C 1 HETATM 22 CL CL1 VVE . . . H 3 30.219 -7.356 52.744 1 0.5 ? CL1 VVE 601 C 1 HETATM 23 O O4 VVE . . . H 3 34.925 -9.867 55.144 1 0.5 ? O4 VVE 601 C 1 HETATM 24 C C13 VVE . . . H 3 35.568 -9.227 56.198 1 0.5 ? C13 VVE 601 C 1 HETATM 25 CL CL2 VVE . . . H 3 38.689 -10.133 58.487 1 0.5 ? CL2 VVE 601 C 1 HETATM 26 C C17 VVE . . . H 3 35.872 -7.413 57.752 1 0.5 ? C17 VVE 601 C 1 HETATM 27 N N3 VVE . . . H 3 35.169 -5.109 58.677 1 0.5 ? N3 VVE 601 C 1 HETATM 28 C C19 VVE . . . H 3 35.178 -7.993 56.696 1 0.5 ? C19 VVE 601 C 1 HETATM 29 C C20 VVE . . . H 3 33.396 -13.83 56.178 1 0.5 ? C20 VVE 601 C 1 HETATM 30 C C21 VVE . . . H 3 34.505 -13.011 56.196 1 0.5 ? C21 VVE 601 C 1 HETATM 31 C C22 VVE . . . H 3 35.688 -13.563 56.661 1 0.5 ? C22 VVE 601 C 1 HETATM 32 C C23 VVE . . . H 3 35.75 -14.879 57.09 1 0.5 ? C23 VVE 601 C 1 HETATM 33 C C24 VVE . . . H 3 34.638 -15.703 57.073 1 0.5 ? C24 VVE 601 C 1 HETATM 34 C C25 VVE . . . H 3 33.459 -15.153 56.608 1 0.5 ? C25 VVE 601 C 1 HETATM 35 H H1 VVE . . . H 3 32.941 -7.297 52.159 1 0.5 ? H1 VVE 601 C 1 HETATM 36 H H2 VVE . . . H 3 34.83 -8.287 53.097 1 0.5 ? H2 VVE 601 C 1 HETATM 37 H H3 VVE . . . H 3 36.922 -10.723 56.421 1 0.5 ? H3 VVE 601 C 1 HETATM 38 H H4 VVE . . . H 3 37.44 -7.697 59.023 1 0.5 ? H4 VVE 601 C 1 HETATM 39 H H5 VVE . . . H 3 29.418 -16.733 55.443 1 0.5 ? H5 VVE 601 C 1 HETATM 40 H H6 VVE . . . H 3 28.638 -16.371 56.84 1 0.5 ? H6 VVE 601 C 1 HETATM 41 H H8 VVE . . . H 3 30.139 -17.833 57.778 1 0.5 ? H8 VVE 601 C 1 HETATM 42 H H10 VVE . . . H 3 30.745 -12.456 54.826 1 0.5 ? H10 VVE 601 C 1 HETATM 43 H H11 VVE . . . H 3 32.227 -12.003 54.582 1 0.5 ? H11 VVE 601 C 1 HETATM 44 H H12 VVE . . . H 3 31.496 -11.703 57.21 1 0.5 ? H12 VVE 601 C 1 HETATM 45 H H13 VVE . . . H 3 30.592 -10.818 56.24 1 0.5 ? H13 VVE 601 C 1 HETATM 46 H H14 VVE . . . H 3 30.595 -9.074 54.913 1 0.5 ? H14 VVE 601 C 1 HETATM 47 H H15 VVE . . . H 3 34.442 -7.539 56.323 1 0.5 ? H15 VVE 601 C 1 HETATM 48 H H16 VVE . . . H 3 34.463 -12.121 55.906 1 0.5 ? H16 VVE 601 C 1 HETATM 49 H H17 VVE . . . H 3 36.463 -13.031 56.687 1 0.5 ? H17 VVE 601 C 1 HETATM 50 H H18 VVE . . . H 3 36.569 -15.222 57.401 1 0.5 ? H18 VVE 601 C 1 HETATM 51 H H19 VVE . . . H 3 34.687 -16.597 57.365 1 0.5 ? H19 VVE 601 C 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 51 #