data_8U6I # _model_server_result.job_id RBkFdDzGlBRfRswkw-jYSQ _model_server_result.datetime_utc '2024-11-12 20:41:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u6i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 8U6I # _exptl.entry_id 8U6I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.41 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[2-(2-{[(4R)-2-cyanoindolizin-8-yl]oxy}phenoxy)ethyl]-N-methylpropanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.81 _cell.angle_gamma 90 _cell.entry_id 8U6I _cell.length_a 221.73 _cell.length_b 67.932 _cell.length_c 103.333 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8U6I _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 183 A TYR 181 1_555 F MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc2 A OD1 ASP 445 A ASP 443 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc3 A OE2 GLU 480 A GLU 478 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.835 ? metalc ? metalc4 A OD1 ASP 500 A ASP 498 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc5 A OD2 ASP 500 A ASP 498 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc6 B OE2 GLU 138 B GLU 138 1_555 F MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? # _chem_comp.formula 'C21 H21 N3 O3' _chem_comp.formula_weight 363.41 _chem_comp.id VVN _chem_comp.mon_nstd_flag . _chem_comp.name N-[2-(2-{[(4R)-2-cyanoindolizin-8-yl]oxy}phenoxy)ethyl]-N-methylpropanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C8 VVN doub 376 n y C9 C10 VVN sing 377 n y C8 C7 VVN sing 378 n y C10 C11 VVN doub 379 n y C7 O2 VVN sing 380 n n C7 C12 VVN doub 381 n y C4 C3 VVN sing 382 n n C6 O2 VVN sing 383 n n C6 C5 VVN sing 384 n n C11 C12 VVN sing 385 n y C12 O3 VVN sing 386 n n C3 C2 VVN sing 387 n n C5 N1 VVN sing 388 n n C2 N1 VVN sing 389 n n C2 O1 VVN doub 390 n n O3 C13 VVN sing 391 n n N1 C1 VVN sing 392 n n C14 C13 VVN doub 393 n y C14 C15 VVN sing 394 n y C13 C17 VVN sing 395 n y C15 C16 VVN doub 396 n y C17 C18 VVN doub 397 n y C17 N2 VVN sing 398 n y C16 N2 VVN sing 399 n y C18 C19 VVN sing 400 n y N2 C21 VVN sing 401 n y C21 C19 VVN doub 402 n y C19 C20 VVN sing 403 n n C20 N3 VVN trip 404 n n C4 H6 VVN sing 405 n n C4 H5 VVN sing 406 n n C4 H20 VVN sing 407 n n C5 H7 VVN sing 408 n n C5 H8 VVN sing 409 n n C6 H10 VVN sing 410 n n C6 H9 VVN sing 411 n n C8 H11 VVN sing 412 n n C9 H12 VVN sing 413 n n C10 H13 VVN sing 414 n n C11 H14 VVN sing 415 n n C1 H2 VVN sing 416 n n C1 H1 VVN sing 417 n n C1 H3 VVN sing 418 n n C14 H15 VVN sing 419 n n C15 H16 VVN sing 420 n n C16 H17 VVN sing 421 n n C18 H18 VVN sing 422 n n C21 H19 VVN sing 423 n n C3 H21 VVN sing 424 n n C3 H4 VVN sing 425 n n # _atom_sites.entry_id 8U6I _atom_sites.fract_transf_matrix[1][1] 0.00451 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001449 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014721 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010165 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 VVN A 1 601 601 VVN J45 . D 4 MG A 1 602 1 MG MG . E 4 MG A 1 603 3 MG MG . F 4 MG B 1 501 2 MG MG . G 5 HOH A 1 701 29 HOH HOH . G 5 HOH A 2 702 39 HOH HOH . G 5 HOH A 3 703 15 HOH HOH . G 5 HOH A 4 704 40 HOH HOH . G 5 HOH A 5 705 57 HOH HOH . G 5 HOH A 6 706 30 HOH HOH . G 5 HOH A 7 707 55 HOH HOH . G 5 HOH A 8 708 32 HOH HOH . G 5 HOH A 9 709 56 HOH HOH . H 5 HOH B 1 601 21 HOH HOH . H 5 HOH B 2 602 54 HOH HOH . H 5 HOH B 3 603 50 HOH HOH . H 5 HOH B 4 604 34 HOH HOH . H 5 HOH B 5 605 23 HOH HOH . H 5 HOH B 6 606 4 HOH HOH . H 5 HOH B 7 607 8 HOH HOH . H 5 HOH B 8 608 13 HOH HOH . H 5 HOH B 9 609 1 HOH HOH . H 5 HOH B 10 610 38 HOH HOH . H 5 HOH B 11 611 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 VVN . A . C 3 43.857 -3.875 21.642 0.5 67.87 ? N1 VVN 601 A 1 HETATM 2 N N1 VVN . B . C 3 43.551 -4.544 20.259 0.5 70.05 ? N1 VVN 601 A 1 HETATM 3 C C2 VVN . A . C 3 44.082 -5.313 21.501 0.5 69.53 ? C2 VVN 601 A 1 HETATM 4 C C2 VVN . B . C 3 44.426 -4.413 21.487 0.5 68.87 ? C2 VVN 601 A 1 HETATM 5 N N3 VVN . A . C 3 48.892 -1.431 27.79 0.5 67.21 ? N3 VVN 601 A 1 HETATM 6 N N3 VVN . B . C 3 49.008 -1.357 27.982 0.5 67.3 ? N3 VVN 601 A 1 HETATM 7 C C4 VVN . A . C 3 42.967 -6.019 19.197 0.5 72.15 ? C4 VVN 601 A 1 HETATM 8 C C4 VVN . B . C 3 45.734 -6.661 21.872 0.5 70.04 ? C4 VVN 601 A 1 HETATM 9 C C5 VVN . A . C 3 43.179 -3.06 20.624 0.5 65.56 ? C5 VVN 601 A 1 HETATM 10 C C5 VVN . B . C 3 43.085 -3.276 19.688 0.5 68.59 ? C5 VVN 601 A 1 HETATM 11 C C6 VVN . A . C 3 44.222 -2.72 19.521 0.5 68.65 ? C6 VVN 601 A 1 HETATM 12 C C6 VVN . B . C 3 44.331 -2.624 19.03 0.5 68.64 ? C6 VVN 601 A 1 HETATM 13 C C8 VVN . A . C 3 46.107 -0.538 17.882 0.5 60.03 ? C8 VVN 601 A 1 HETATM 14 C C8 VVN . B . C 3 46.131 -0.587 18.035 0.5 60.12 ? C8 VVN 601 A 1 HETATM 15 C C9 VVN . A . C 3 47.386 -0.086 17.586 0.5 62.55 ? C9 VVN 601 A 1 HETATM 16 C C9 VVN . B . C 3 47.296 0.039 17.619 0.5 62.88 ? C9 VVN 601 A 1 HETATM 17 C C10 VVN . A . C 3 48.351 0.023 18.582 0.5 62.48 ? C10 VVN 601 A 1 HETATM 18 C C10 VVN . B . C 3 48.32 0.292 18.526 0.5 62.4 ? C10 VVN 601 A 1 HETATM 19 C C11 VVN . A . C 3 48.034 -0.315 19.888 0.5 64.78 ? C11 VVN 601 A 1 HETATM 20 C C11 VVN . B . C 3 48.177 -0.071 19.857 0.5 64.66 ? C11 VVN 601 A 1 HETATM 21 C C12 VVN . A . C 3 46.748 -0.762 20.196 0.5 63.96 ? C12 VVN 601 A 1 HETATM 22 C C12 VVN . B . C 3 47.002 -0.693 20.283 0.5 64.02 ? C12 VVN 601 A 1 HETATM 23 C C13 VVN . A . C 3 46.278 0.026 22.34 0.5 63.91 ? C13 VVN 601 A 1 HETATM 24 C C13 VVN . B . C 3 46.544 0.034 22.449 0.5 63.85 ? C13 VVN 601 A 1 HETATM 25 C C1 VVN . A . C 3 44.263 -3.243 22.9 0.5 67.88 ? C1 VVN 601 A 1 HETATM 26 C C1 VVN . B . C 3 43.28 -5.81 19.559 0.5 71.85 ? C1 VVN 601 A 1 HETATM 27 C C14 VVN . A . C 3 45.649 1.153 21.886 0.5 64 ? C14 VVN 601 A 1 HETATM 28 C C14 VVN . B . C 3 45.859 1.124 21.984 0.5 63.96 ? C14 VVN 601 A 1 HETATM 29 C C15 VVN . A . C 3 45.523 2.231 22.709 0.5 63.7 ? C15 VVN 601 A 1 HETATM 30 C C15 VVN . B . C 3 45.618 2.173 22.818 0.5 63.61 ? C15 VVN 601 A 1 HETATM 31 C C16 VVN . A . C 3 46.019 2.175 24.002 0.5 66.21 ? C16 VVN 601 A 1 HETATM 32 C C16 VVN . B . C 3 46.055 2.127 24.133 0.5 63.44 ? C16 VVN 601 A 1 HETATM 33 C C17 VVN . A . C 3 46.772 -0.009 23.653 0.5 64.18 ? C17 VVN 601 A 1 HETATM 34 C C17 VVN . B . C 3 46.978 0.009 23.782 0.5 64.19 ? C17 VVN 601 A 1 HETATM 35 C C18 VVN . A . C 3 47.444 -0.966 24.42 0.5 63.62 ? C18 VVN 601 A 1 HETATM 36 C C18 VVN . B . C 3 47.681 -0.916 24.56 0.5 63.7 ? C18 VVN 601 A 1 HETATM 37 C C19 VVN . A . C 3 47.669 -0.351 25.701 0.5 64.48 ? C19 VVN 601 A 1 HETATM 38 C C19 VVN . B . C 3 47.804 -0.315 25.86 0.5 64.47 ? C19 VVN 601 A 1 HETATM 39 C C20 VVN . A . C 3 48.373 -0.977 26.898 0.5 64.31 ? C20 VVN 601 A 1 HETATM 40 C C20 VVN . B . C 3 48.497 -0.918 27.075 0.5 64.37 ? C20 VVN 601 A 1 HETATM 41 C C21 VVN . A . C 3 47.11 0.941 25.632 0.5 65.36 ? C21 VVN 601 A 1 HETATM 42 C C21 VVN . B . C 3 47.16 0.937 25.79 0.5 65.06 ? C21 VVN 601 A 1 HETATM 43 C C3 VVN . A . C 3 43.727 -6.186 20.279 0.5 70.9 ? C3 VVN 601 A 1 HETATM 44 C C3 VVN . B . C 3 45.018 -5.609 22.253 0.5 72.04 ? C3 VVN 601 A 1 HETATM 45 C C7 VVN . A . C 3 45.778 -0.89 19.197 0.5 65.28 ? C7 VVN 601 A 1 HETATM 46 C C7 VVN . B . C 3 45.98 -0.959 19.379 0.5 65.14 ? C7 VVN 601 A 1 HETATM 47 N N2 VVN . A . C 3 46.632 1.044 24.436 0.5 65.72 ? N2 VVN 601 A 1 HETATM 48 N N2 VVN . B . C 3 46.727 1.033 24.576 0.5 65.72 ? N2 VVN 601 A 1 HETATM 49 O O1 VVN . A . C 3 44.769 -5.873 22.326 0.5 72.67 ? O1 VVN 601 A 1 HETATM 50 O O1 VVN . B . C 3 44.485 -3.394 22.009 0.5 68.74 ? O1 VVN 601 A 1 HETATM 51 O O2 VVN . A . C 3 44.473 -1.329 19.544 0.5 66.41 ? O2 VVN 601 A 1 HETATM 52 O O2 VVN . B . C 3 44.81 -1.586 19.865 0.5 65.47 ? O2 VVN 601 A 1 HETATM 53 O O3 VVN . A . C 3 46.42 -1.112 21.514 0.5 62.71 ? O3 VVN 601 A 1 HETATM 54 O O3 VVN . B . C 3 46.82 -1.078 21.622 0.5 62.88 ? O3 VVN 601 A 1 HETATM 55 H H6 VVN . A . C 3 42.732 -6.711 18.368 0.5 86.59 ? H6 VVN 601 A 1 HETATM 56 H H6 VVN . B . C 3 46.078 -7.001 20.966 0.5 84.05 ? H6 VVN 601 A 1 HETATM 57 H H5 VVN . A . C 3 42.416 -5.228 18.841 0.5 86.59 ? H5 VVN 601 A 1 HETATM 58 H H5 VVN . B . C 3 46.152 -7.489 22.473 0.5 84.05 ? H5 VVN 601 A 1 HETATM 59 H H7 VVN . A . C 3 42.35 -3.62 20.191 0.5 78.67 ? H7 VVN 601 A 1 HETATM 60 H H7 VVN . B . C 3 42.312 -3.457 18.941 0.5 82.3 ? H7 VVN 601 A 1 HETATM 61 H H8 VVN . A . C 3 42.802 -2.142 21.074 0.5 78.67 ? H8 VVN 601 A 1 HETATM 62 H H8 VVN . B . C 3 42.689 -2.63 20.472 0.5 82.3 ? H8 VVN 601 A 1 HETATM 63 H H10 VVN . A . C 3 45.147 -3.262 19.713 0.5 82.38 ? H10 VVN 601 A 1 HETATM 64 H H10 VVN . B . C 3 45.109 -3.374 18.9 0.5 82.37 ? H10 VVN 601 A 1 HETATM 65 H H9 VVN . A . C 3 43.83 -3.006 18.546 0.5 82.38 ? H9 VVN 601 A 1 HETATM 66 H H9 VVN . B . C 3 44.057 -2.213 18.059 0.5 82.37 ? H9 VVN 601 A 1 HETATM 67 H H11 VVN . A . C 3 45.362 -0.618 17.094 0.5 72.04 ? H11 VVN 601 A 1 HETATM 68 H H11 VVN . B . C 3 45.336 -0.789 17.321 0.5 72.14 ? H11 VVN 601 A 1 HETATM 69 H H12 VVN . A . C 3 47.636 0.187 16.563 0.5 75.06 ? H12 VVN 601 A 1 HETATM 70 H H12 VVN . B . C 3 47.41 0.333 16.578 0.5 75.46 ? H12 VVN 601 A 1 HETATM 71 H H13 VVN . A . C 3 49.352 0.371 18.336 0.5 74.98 ? H13 VVN 601 A 1 HETATM 72 H H13 VVN . B . C 3 49.234 0.777 18.191 0.5 74.88 ? H13 VVN 601 A 1 HETATM 73 H H14 VVN . A . C 3 48.785 -0.231 20.671 0.5 77.73 ? H14 VVN 601 A 1 HETATM 74 H H14 VVN . B . C 3 48.978 0.128 20.566 0.5 77.59 ? H14 VVN 601 A 1 HETATM 75 H H2 VVN . A . C 3 44.228 -2.162 22.791 0.5 81.45 ? H2 VVN 601 A 1 HETATM 76 H H2 VVN . B . C 3 44.201 -6.183 19.115 0.5 86.22 ? H2 VVN 601 A 1 HETATM 77 H H1 VVN . A . C 3 45.276 -3.55 23.15 0.5 81.45 ? H1 VVN 601 A 1 HETATM 78 H H1 VVN . B . C 3 42.542 -5.642 18.778 0.5 86.22 ? H1 VVN 601 A 1 HETATM 79 H H3 VVN . A . C 3 43.585 -3.55 23.695 0.5 81.45 ? H3 VVN 601 A 1 HETATM 80 H H3 VVN . B . C 3 42.898 -6.542 20.268 0.5 86.22 ? H3 VVN 601 A 1 HETATM 81 H H15 VVN . A . C 3 45.253 1.189 20.876 0.5 76.8 ? H15 VVN 601 A 1 HETATM 82 H H15 VVN . B . C 3 45.51 1.151 20.956 0.5 76.75 ? H15 VVN 601 A 1 HETATM 83 H H16 VVN . A . C 3 45.032 3.135 22.352 0.5 76.44 ? H16 VVN 601 A 1 HETATM 84 H H16 VVN . B . C 3 45.081 3.047 22.452 0.5 76.34 ? H16 VVN 601 A 1 HETATM 85 H H17 VVN . A . C 3 45.918 3.032 24.665 0.5 79.45 ? H17 VVN 601 A 1 HETATM 86 H H17 VVN . B . C 3 45.862 2.962 24.804 0.5 76.12 ? H17 VVN 601 A 1 HETATM 87 H H18 VVN . A . C 3 47.735 -1.968 24.113 0.5 76.35 ? H18 VVN 601 A 1 HETATM 88 H H18 VVN . B . C 3 48.056 -1.888 24.247 0.5 76.44 ? H18 VVN 601 A 1 HETATM 89 H H19 VVN . A . C 3 47.087 1.693 26.42 0.5 78.43 ? H19 VVN 601 A 1 HETATM 90 H H19 VVN . B . C 3 47.05 1.669 26.589 0.5 78.07 ? H19 VVN 601 A 1 HETATM 91 H H4 VVN . A . C 3 43.176 -6.498 21.163 0.5 85.08 ? H4 VVN 601 A 1 HETATM 92 H H4 VVN . B . C 3 45.608 -4.711 22.416 0.5 86.45 ? H4 VVN 601 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 37 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 92 #