data_8U6J # _model_server_result.job_id s6fDXdyVPH9J6-C6Fj7rgA _model_server_result.datetime_utc '2024-11-22 06:21:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u6j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 8U6J # _exptl.entry_id 8U6J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 397.855 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[2-(5-chloro-2-{[(4R)-2-cyanoindolizin-8-yl]oxy}phenoxy)ethyl]-N-methylpropanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.89 _cell.angle_gamma 90 _cell.entry_id 8U6J _cell.length_a 224.431 _cell.length_b 69.63 _cell.length_c 105.065 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8U6J _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OE1 GLN 23 B GLN 23 1_555 D MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc2 B O THR 58 B THR 58 1_555 D MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? # _chem_comp.formula 'C21 H20 Cl N3 O3' _chem_comp.formula_weight 397.855 _chem_comp.id VR9 _chem_comp.mon_nstd_flag . _chem_comp.name N-[2-(5-chloro-2-{[(4R)-2-cyanoindolizin-8-yl]oxy}phenoxy)ethyl]-N-methylpropanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C9 VR9 sing 376 n n C9 C10 VR9 doub 377 n y C9 C8 VR9 sing 378 n y C10 C11 VR9 sing 379 n y C8 C7 VR9 doub 380 n y C11 C12 VR9 doub 381 n y C1 N1 VR9 sing 382 n n C7 C12 VR9 sing 383 n y C7 O2 VR9 sing 384 n n C6 O2 VR9 sing 385 n n C6 C5 VR9 sing 386 n n C12 O3 VR9 sing 387 n n N1 C5 VR9 sing 388 n n N1 C2 VR9 sing 389 n n O1 C2 VR9 doub 390 n n O3 C13 VR9 sing 391 n n C2 C3 VR9 sing 392 n n C14 C13 VR9 doub 393 n y C14 C15 VR9 sing 394 n y C13 C17 VR9 sing 395 n y C3 C4 VR9 sing 396 n n C15 C16 VR9 doub 397 n y C17 C18 VR9 doub 398 n y C17 N2 VR9 sing 399 n y C16 N2 VR9 sing 400 n y C18 C19 VR9 sing 401 n y N2 C21 VR9 sing 402 n y C21 C19 VR9 doub 403 n y C19 C20 VR9 sing 404 n n C20 N3 VR9 trip 405 n n C10 H12 VR9 sing 406 n n C15 H15 VR9 sing 407 n n C11 H13 VR9 sing 408 n n C14 H14 VR9 sing 409 n n C16 H16 VR9 sing 410 n n C18 H17 VR9 sing 411 n n C1 H2 VR9 sing 412 n n C1 H3 VR9 sing 413 n n C1 H1 VR9 sing 414 n n C21 H18 VR9 sing 415 n n C3 H19 VR9 sing 416 n n C3 H4 VR9 sing 417 n n C4 H6 VR9 sing 418 n n C4 H20 VR9 sing 419 n n C4 H5 VR9 sing 420 n n C5 H8 VR9 sing 421 n n C5 H7 VR9 sing 422 n n C6 H10 VR9 sing 423 n n C6 H9 VR9 sing 424 n n C8 H11 VR9 sing 425 n n # _atom_sites.entry_id 8U6J _atom_sites.fract_transf_matrix[1][1] 0.004456 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001268 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014362 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009896 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 VR9 A 1 601 601 VR9 J46 . D 4 MG B 1 501 1 MG MG . E 5 HOH A 1 701 5 HOH HOH . E 5 HOH A 2 702 8 HOH HOH . E 5 HOH A 3 703 9 HOH HOH . F 5 HOH B 1 601 16 HOH HOH . F 5 HOH B 2 602 20 HOH HOH . F 5 HOH B 3 603 17 HOH HOH . F 5 HOH B 4 604 12 HOH HOH . F 5 HOH B 5 605 7 HOH HOH . F 5 HOH B 6 606 13 HOH HOH . F 5 HOH B 7 607 18 HOH HOH . F 5 HOH B 8 608 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 VR9 . . . C 3 47.866 -13.215 19.545 1 85.72 ? C10 VR9 601 A 1 HETATM 2 C C13 VR9 . . . C 3 47.082 -13.095 24.041 1 85.1 ? C13 VR9 601 A 1 HETATM 3 C C15 VR9 . . . C 3 46.038 -11.033 24.516 1 85.86 ? C15 VR9 601 A 1 HETATM 4 C C17 VR9 . . . C 3 47.51 -13.188 25.382 1 85.89 ? C17 VR9 601 A 1 HETATM 5 C C20 VR9 . . . C 3 49.039 -14.22 28.679 1 93.5 ? C20 VR9 601 A 1 HETATM 6 C C11 VR9 . . . C 3 48.175 -13.339 20.915 1 86.93 ? C11 VR9 601 A 1 HETATM 7 C C12 VR9 . . . C 3 47.246 -13.931 21.782 1 83.55 ? C12 VR9 601 A 1 HETATM 8 C C14 VR9 . . . C 3 46.347 -12.015 23.621 1 87.24 ? C14 VR9 601 A 1 HETATM 9 C C16 VR9 . . . C 3 46.478 -11.147 25.831 1 89.81 ? C16 VR9 601 A 1 HETATM 10 C C18 VR9 . . . C 3 48.248 -14.105 26.132 1 87.97 ? C18 VR9 601 A 1 HETATM 11 C C19 VR9 . . . C 3 48.337 -13.582 27.467 1 87.95 ? C19 VR9 601 A 1 HETATM 12 C C1 VR9 . . . C 3 43.151 -18.766 21.239 1 82.41 ? C1 VR9 601 A 1 HETATM 13 C C2 VR9 . . . C 3 44.785 -18.913 23.186 1 95.29 ? C2 VR9 601 A 1 HETATM 14 C C21 VR9 . . . C 3 47.637 -12.364 27.428 1 90.18 ? C21 VR9 601 A 1 HETATM 15 C C3 VR9 . . . C 3 45.714 -18.5 24.303 1 92.05 ? C3 VR9 601 A 1 HETATM 16 C C4 VR9 . . . C 3 45.864 -18.888 25.549 1 93.43 ? C4 VR9 601 A 1 HETATM 17 C C5 VR9 . . . C 3 43.453 -16.667 22.749 1 81.17 ? C5 VR9 601 A 1 HETATM 18 C C6 VR9 . . . C 3 44.084 -15.726 21.665 1 87.89 ? C6 VR9 601 A 1 HETATM 19 C C7 VR9 . . . C 3 46.055 -14.408 21.278 1 81.16 ? C7 VR9 601 A 1 HETATM 20 C C8 VR9 . . . C 3 45.742 -14.29 19.928 1 87.48 ? C8 VR9 601 A 1 HETATM 21 C C9 VR9 . . . C 3 46.649 -13.689 19.044 1 86.75 ? C9 VR9 601 A 1 HETATM 22 N N1 VR9 . . . C 3 43.777 -18.083 22.398 1 88.32 ? N1 VR9 601 A 1 HETATM 23 N N2 VR9 . . . C 3 47.207 -12.231 26.22 1 89.42 ? N2 VR9 601 A 1 HETATM 24 N N3 VR9 . . . C 3 49.562 -14.688 29.578 1 95.43 ? N3 VR9 601 A 1 HETATM 25 O O1 VR9 . . . C 3 44.987 -19.953 22.829 1 100.49 ? O1 VR9 601 A 1 HETATM 26 O O2 VR9 . . . C 3 45.182 -15.004 22.211 1 82.56 ? O2 VR9 601 A 1 HETATM 27 O O3 VR9 . . . C 3 47.447 -14.135 23.171 1 80.84 ? O3 VR9 601 A 1 HETATM 28 CL CL1 VR9 . . . C 3 46.232 -13.542 17.312 1 183.9 ? CL1 VR9 601 A 1 HETATM 29 H H12 VR9 . . . C 3 48.58 -12.747 18.872 1 103.1 ? H12 VR9 601 A 1 HETATM 30 H H15 VR9 . . . C 3 45.453 -10.17 24.204 1 103.27 ? H15 VR9 601 A 1 HETATM 31 H H13 VR9 . . . C 3 49.125 -12.979 21.296 1 104.55 ? H13 VR9 601 A 1 HETATM 32 H H14 VR9 . . . C 3 46.015 -11.943 22.587 1 104.93 ? H14 VR9 601 A 1 HETATM 33 H H16 VR9 . . . C 3 46.239 -10.367 26.552 1 108 ? H16 VR9 601 A 1 HETATM 34 H H17 VR9 . . . C 3 48.675 -15.039 25.774 1 105.8 ? H17 VR9 601 A 1 HETATM 35 H H2 VR9 . . . C 3 42.573 -18.046 20.662 1 99.14 ? H2 VR9 601 A 1 HETATM 36 H H3 VR9 . . . C 3 42.494 -19.557 21.597 1 99.14 ? H3 VR9 601 A 1 HETATM 37 H H1 VR9 . . . C 3 43.928 -19.196 20.609 1 99.14 ? H1 VR9 601 A 1 HETATM 38 H H18 VR9 . . . C 3 47.487 -11.671 28.254 1 108.45 ? H18 VR9 601 A 1 HETATM 39 H H19 VR9 . . . C 3 46.225 -19.132 23.578 1 110.7 ? H19 VR9 601 A 1 HETATM 40 H H20 VR9 . . . C 3 45.328 -19.455 26.247 1 112.36 ? H20 VR9 601 A 1 HETATM 41 H H5 VR9 . . . C 3 45 -19.432 25.404 1 112.36 ? H5 VR9 601 A 1 HETATM 42 H H8 VR9 . . . C 3 42.371 -16.532 22.768 1 97.64 ? H8 VR9 601 A 1 HETATM 43 H H7 VR9 . . . C 3 43.866 -16.428 23.729 1 97.64 ? H7 VR9 601 A 1 HETATM 44 H H10 VR9 . . . C 3 44.43 -16.326 20.829 1 105.71 ? H10 VR9 601 A 1 HETATM 45 H H9 VR9 . . . C 3 43.331 -15.024 21.319 1 105.71 ? H9 VR9 601 A 1 HETATM 46 H H11 VR9 . . . C 3 44.793 -14.666 19.558 1 105.21 ? H11 VR9 601 A 1 # _model_server_stats.io_time_ms 102 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 46 #