data_8U6K # _model_server_result.job_id g10IVIZpI1E6ZDWkUi7Vgg _model_server_result.datetime_utc '2025-01-10 10:38:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u6k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 8U6K # _exptl.entry_id 8U6K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 372.417 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(2-{2-[(6-cyanonaphthalen-1-yl)oxy]phenoxy}ethyl)-N-methylprop-2-enamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.54 _cell.angle_gamma 90 _cell.entry_id 8U6K _cell.length_a 222.132 _cell.length_b 68.384 _cell.length_c 103.54 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8U6K _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 445 A ASP 443 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc2 A OD2 ASP 500 A ASP 498 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc3 B OE1 GLN 23 B GLN 23 1_555 F MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc4 B OD1 ASN 57 B ASN 57 1_555 F MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc5 B O THR 58 B THR 58 1_555 F MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? # _chem_comp.formula 'C23 H20 N2 O3' _chem_comp.formula_weight 372.417 _chem_comp.id VRF _chem_comp.mon_nstd_flag . _chem_comp.name N-(2-{2-[(6-cyanonaphthalen-1-yl)oxy]phenoxy}ethyl)-N-methylprop-2-enamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C8 VRF doub 380 n y C9 C10 VRF sing 381 n y C8 C7 VRF sing 382 n y C10 C11 VRF doub 383 n y C7 O2 VRF sing 384 n n C7 C12 VRF doub 385 n y O2 C6 VRF sing 386 n n C6 C5 VRF sing 387 n n O1 C2 VRF doub 388 n n C11 C12 VRF sing 389 n y C12 O3 VRF sing 390 n n C5 N1 VRF sing 391 n n C4 C3 VRF doub 392 n n C2 N1 VRF sing 393 n n C2 C3 VRF sing 394 n n N1 C1 VRF sing 395 n n O3 C13 VRF sing 396 n n C14 C13 VRF doub 397 n y C14 C15 VRF sing 398 n y C13 C18 VRF sing 399 n y C15 C16 VRF doub 400 n y C18 C19 VRF doub 401 n y C18 C17 VRF sing 402 n y C19 C20 VRF sing 403 n y C16 C17 VRF sing 404 n y C17 C23 VRF doub 405 n y C20 C21 VRF doub 406 n y C23 C21 VRF sing 407 n y C21 C22 VRF sing 408 n n C22 N2 VRF trip 409 n n C1 H1 VRF sing 410 n n C1 H2 VRF sing 411 n n C1 H3 VRF sing 412 n n C3 H4 VRF sing 413 n n C4 H5 VRF sing 414 n n C4 H6 VRF sing 415 n n C5 H7 VRF sing 416 n n C5 H8 VRF sing 417 n n C6 H10 VRF sing 418 n n C6 H9 VRF sing 419 n n C8 H11 VRF sing 420 n n C9 H12 VRF sing 421 n n C10 H13 VRF sing 422 n n C11 H14 VRF sing 423 n n C14 H15 VRF sing 424 n n C15 H16 VRF sing 425 n n C16 H17 VRF sing 426 n n C19 H18 VRF sing 427 n n C20 H19 VRF sing 428 n n C23 H20 VRF sing 429 n n # _atom_sites.entry_id 8U6K _atom_sites.fract_transf_matrix[1][1] 0.004502 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001423 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014623 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010129 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 VRF A 1 601 602 VRF J47 . D 4 MG A 1 602 1 MG MG . E 5 PO4 A 1 603 1 PO4 PO4 . F 4 MG B 1 501 2 MG MG . G 6 HOH A 1 701 5 HOH HOH . G 6 HOH A 2 702 1 HOH HOH . G 6 HOH A 3 703 6 HOH HOH . G 6 HOH A 4 704 3 HOH HOH . G 6 HOH A 5 705 14 HOH HOH . G 6 HOH A 6 706 10 HOH HOH . G 6 HOH A 7 707 16 HOH HOH . G 6 HOH A 8 708 7 HOH HOH . G 6 HOH A 9 709 4 HOH HOH . H 6 HOH B 1 601 21 HOH HOH . H 6 HOH B 2 602 23 HOH HOH . H 6 HOH B 3 603 12 HOH HOH . H 6 HOH B 4 604 11 HOH HOH . H 6 HOH B 5 605 18 HOH HOH . H 6 HOH B 6 606 22 HOH HOH . H 6 HOH B 7 607 17 HOH HOH . H 6 HOH B 8 608 20 HOH HOH . H 6 HOH B 9 609 24 HOH HOH . H 6 HOH B 10 610 9 HOH HOH . H 6 HOH B 11 611 15 HOH HOH . H 6 HOH B 12 612 19 HOH HOH . H 6 HOH B 13 613 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 VRF . . . C 3 44.217 4.101 21.793 1 79.24 ? N1 VRF 601 A 1 HETATM 2 C C1 VRF . . . C 3 44.899 4.146 23.077 1 79.16 ? C1 VRF 601 A 1 HETATM 3 C C2 VRF . . . C 3 44.095 2.823 21.146 1 83.8 ? C2 VRF 601 A 1 HETATM 4 C C3 VRF . . . C 3 44.686 1.63 21.858 1 83.3 ? C3 VRF 601 A 1 HETATM 5 C C4 VRF . . . C 3 45.376 0.796 21.12 1 89.39 ? C4 VRF 601 A 1 HETATM 6 C C5 VRF . . . C 3 43.685 5.263 21.096 1 78.32 ? C5 VRF 601 A 1 HETATM 7 C C6 VRF . . . C 3 44.606 5.477 19.881 1 81.12 ? C6 VRF 601 A 1 HETATM 8 C C7 VRF . . . C 3 46.274 7.222 19.619 1 74.51 ? C7 VRF 601 A 1 HETATM 9 O O1 VRF . . . C 3 43.571 2.696 20.084 1 86.03 ? O1 VRF 601 A 1 HETATM 10 C C8 VRF . . . C 3 46.722 7.673 18.387 1 74.72 ? C8 VRF 601 A 1 HETATM 11 C C9 VRF . . . C 3 48.033 8.093 18.263 1 81.72 ? C9 VRF 601 A 1 HETATM 12 C C10 VRF . . . C 3 48.893 8.08 19.359 1 80.7 ? C10 VRF 601 A 1 HETATM 13 O O2 VRF . . . C 3 44.941 6.826 19.756 1 76.77 ? O2 VRF 601 A 1 HETATM 14 C C11 VRF . . . C 3 48.442 7.649 20.589 1 78.37 ? C11 VRF 601 A 1 HETATM 15 C C12 VRF . . . C 3 47.129 7.226 20.719 1 75.3 ? C12 VRF 601 A 1 HETATM 16 C C13 VRF . . . C 3 46.694 7.839 22.901 1 72.88 ? C13 VRF 601 A 1 HETATM 17 C C14 VRF . . . C 3 46.035 9.02 22.618 1 77.92 ? C14 VRF 601 A 1 HETATM 18 C C15 VRF . . . C 3 45.997 10.046 23.55 1 81.61 ? C15 VRF 601 A 1 HETATM 19 C C16 VRF . . . C 3 46.613 9.919 24.783 1 76.01 ? C16 VRF 601 A 1 HETATM 20 C C17 VRF . . . C 3 47.271 8.745 25.08 1 72.66 ? C17 VRF 601 A 1 HETATM 21 C C18 VRF . . . C 3 47.309 7.712 24.143 1 72.9 ? C18 VRF 601 A 1 HETATM 22 C C19 VRF . . . C 3 47.979 6.552 24.468 1 78.32 ? C19 VRF 601 A 1 HETATM 23 C C20 VRF . . . C 3 48.603 6.429 25.703 1 76.8 ? C20 VRF 601 A 1 HETATM 24 C C21 VRF . . . C 3 48.566 7.462 26.617 1 70.68 ? C21 VRF 601 A 1 HETATM 25 C C22 VRF . . . C 3 49.268 7.287 27.957 1 71.7 ? C22 VRF 601 A 1 HETATM 26 C C23 VRF . . . C 3 47.895 8.626 26.307 1 74.21 ? C23 VRF 601 A 1 HETATM 27 N N2 VRF . . . C 3 49.792 7.146 28.951 1 73.48 ? N2 VRF 601 A 1 HETATM 28 O O3 VRF . . . C 3 46.705 6.787 21.967 1 63.24 ? O3 VRF 601 A 1 HETATM 29 H H1 VRF . . . C 3 44.853 5.156 23.476 1 94.99 ? H1 VRF 601 A 1 HETATM 30 H H2 VRF . . . C 3 45.938 3.855 22.945 1 94.99 ? H2 VRF 601 A 1 HETATM 31 H H3 VRF . . . C 3 44.415 3.461 23.768 1 94.99 ? H3 VRF 601 A 1 HETATM 32 H H4 VRF . . . C 3 44.546 1.473 22.921 1 99.96 ? H4 VRF 601 A 1 HETATM 33 H H5 VRF . . . C 3 45.487 0.984 20.056 1 107.27 ? H5 VRF 601 A 1 HETATM 34 H H6 VRF . . . C 3 45.823 -0.076 21.578 1 107.27 ? H6 VRF 601 A 1 HETATM 35 H H7 VRF . . . C 3 42.667 5.076 20.771 1 93.98 ? H7 VRF 601 A 1 HETATM 36 H H8 VRF . . . C 3 43.704 6.134 21.743 1 93.98 ? H8 VRF 601 A 1 HETATM 37 H H10 VRF . . . C 3 45.512 4.894 20.012 1 97.34 ? H10 VRF 601 A 1 HETATM 38 H H9 VRF . . . C 3 44.093 5.151 18.982 1 97.34 ? H9 VRF 601 A 1 HETATM 39 H H11 VRF . . . C 3 46.054 7.695 17.535 1 89.66 ? H11 VRF 601 A 1 HETATM 40 H H12 VRF . . . C 3 48.396 8.436 17.303 1 98.06 ? H12 VRF 601 A 1 HETATM 41 H H13 VRF . . . C 3 49.919 8.408 19.244 1 96.84 ? H13 VRF 601 A 1 HETATM 42 H H14 VRF . . . C 3 49.106 7.642 21.444 1 94.04 ? H14 VRF 601 A 1 HETATM 43 H H15 VRF . . . C 3 45.545 9.145 21.66 1 93.5 ? H15 VRF 601 A 1 HETATM 44 H H16 VRF . . . C 3 45.474 10.963 23.309 1 97.93 ? H16 VRF 601 A 1 HETATM 45 H H17 VRF . . . C 3 46.579 10.729 25.502 1 91.21 ? H17 VRF 601 A 1 HETATM 46 H H18 VRF . . . C 3 48.019 5.734 23.76 1 93.98 ? H18 VRF 601 A 1 HETATM 47 H H19 VRF . . . C 3 49.124 5.513 25.951 1 92.16 ? H19 VRF 601 A 1 HETATM 48 H H20 VRF . . . C 3 47.858 9.441 27.02 1 89.05 ? H20 VRF 601 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 489 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 48 #