data_8U6L # _model_server_result.job_id kfMZoBQx1IrWWulGdNUN3Q _model_server_result.datetime_utc '2025-01-10 13:36:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u6l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 8U6L # _exptl.entry_id 8U6L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 406.862 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(2-{5-chloro-2-[(6-cyanonaphthalen-1-yl)oxy]phenoxy}ethyl)-N-methylprop-2-enamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.88 _cell.angle_gamma 90 _cell.entry_id 8U6L _cell.length_a 222.881 _cell.length_b 67.633 _cell.length_c 103.709 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8U6L _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 445 A ASP 443 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? metalc ? metalc2 A OD1 ASP 500 A ASP 498 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.97 ? metalc ? metalc3 A OD2 ASP 500 A ASP 498 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc4 B OE1 GLN 23 B GLN 23 1_555 F MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? metalc ? metalc5 B OD1 ASN 57 B ASN 57 1_555 F MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc6 B O THR 58 B THR 58 1_555 F MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.852 ? # _chem_comp.formula 'C23 H19 Cl N2 O3' _chem_comp.formula_weight 406.862 _chem_comp.id VRQ _chem_comp.mon_nstd_flag . _chem_comp.name N-(2-{5-chloro-2-[(6-cyanonaphthalen-1-yl)oxy]phenoxy}ethyl)-N-methylprop-2-enamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 VRQ sing 376 n n N1 C2 VRQ sing 377 n n N1 C5 VRQ sing 378 n n C2 C3 VRQ sing 379 n n C2 O1 VRQ doub 380 n n C3 C4 VRQ doub 381 n n C5 C6 VRQ sing 382 n n C6 O2 VRQ sing 383 n n O2 C7 VRQ sing 384 n n C7 C12 VRQ doub 385 n y C7 C8 VRQ sing 386 n y C8 C9 VRQ doub 387 n y C9 CL1 VRQ sing 388 n n C9 C10 VRQ sing 389 n y C10 C11 VRQ doub 390 n y C11 C12 VRQ sing 391 n y C12 O3 VRQ sing 392 n n O3 C13 VRQ sing 393 n n C13 C18 VRQ doub 394 n y C13 C14 VRQ sing 395 n y C14 C15 VRQ doub 396 n y C15 C16 VRQ sing 397 n y C16 C17 VRQ doub 398 n y C17 C23 VRQ sing 399 n y C17 C18 VRQ sing 400 n y C18 C19 VRQ sing 401 n y C19 C20 VRQ doub 402 n y C20 C21 VRQ sing 403 n y C21 C22 VRQ sing 404 n n C21 C23 VRQ doub 405 n y C22 N2 VRQ trip 406 n n C8 H11 VRQ sing 407 n n C10 H12 VRQ sing 408 n n C11 H13 VRQ sing 409 n n C6 H9 VRQ sing 410 n n C6 H10 VRQ sing 411 n n C3 H4 VRQ sing 412 n n C5 H7 VRQ sing 413 n n C5 H8 VRQ sing 414 n n C4 H6 VRQ sing 415 n n C4 H5 VRQ sing 416 n n C15 H15 VRQ sing 417 n n C16 H16 VRQ sing 418 n n C19 H17 VRQ sing 419 n n C1 H3 VRQ sing 420 n n C1 H1 VRQ sing 421 n n C1 H2 VRQ sing 422 n n C14 H14 VRQ sing 423 n n C20 H18 VRQ sing 424 n n C23 H19 VRQ sing 425 n n # _atom_sites.entry_id 8U6L _atom_sites.fract_transf_matrix[1][1] 0.004487 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001447 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014786 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010132 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 VRQ A 1 601 601 VRQ J48 . D 4 MG A 1 602 1 MG MG . E 4 MG A 1 603 3 MG MG . F 4 MG B 1 501 2 MG MG . G 5 HOH A 1 701 23 HOH HOH . G 5 HOH A 2 702 8 HOH HOH . G 5 HOH A 3 703 6 HOH HOH . G 5 HOH A 4 704 22 HOH HOH . G 5 HOH A 5 705 9 HOH HOH . G 5 HOH A 6 706 19 HOH HOH . G 5 HOH A 7 707 7 HOH HOH . G 5 HOH A 8 708 11 HOH HOH . G 5 HOH A 9 709 3 HOH HOH . G 5 HOH A 10 710 21 HOH HOH . G 5 HOH A 11 711 2 HOH HOH . G 5 HOH A 12 713 20 HOH HOH . H 5 HOH B 1 601 4 HOH HOH . H 5 HOH B 2 602 1 HOH HOH . H 5 HOH B 3 603 16 HOH HOH . H 5 HOH B 4 604 14 HOH HOH . H 5 HOH B 5 605 13 HOH HOH . H 5 HOH B 6 606 15 HOH HOH . H 5 HOH B 7 607 12 HOH HOH . H 5 HOH B 8 608 17 HOH HOH . H 5 HOH B 9 609 5 HOH HOH . H 5 HOH B 10 610 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 VRQ . . . C 3 45.49 -3.884 18.549 1 61.75 ? C8 VRQ 601 A 1 HETATM 2 C C9 VRQ . . . C 3 46.398 -3.174 17.809 1 61.01 ? C9 VRQ 601 A 1 HETATM 3 C C10 VRQ . . . C 3 47.573 -2.741 18.409 1 61.28 ? C10 VRQ 601 A 1 HETATM 4 C C11 VRQ . . . C 3 47.822 -3.032 19.751 1 64.49 ? C11 VRQ 601 A 1 HETATM 5 C C12 VRQ . . . C 3 46.881 -3.748 20.476 1 61.62 ? C12 VRQ 601 A 1 HETATM 6 C C13 VRQ . . . C 3 46.843 -3.102 22.748 1 66.71 ? C13 VRQ 601 A 1 HETATM 7 N N1 VRQ . . . C 3 43.902 -7.862 20.552 1 72.15 ? N1 VRQ 601 A 1 HETATM 8 C C6 VRQ . . . C 3 43.594 -5.308 20.123 1 68.05 ? C6 VRQ 601 A 1 HETATM 9 C C3 VRQ . . . C 3 44.849 -8.967 22.593 1 70.75 ? C3 VRQ 601 A 1 HETATM 10 C C5 VRQ . . . C 3 43.405 -6.775 19.699 1 75.56 ? C5 VRQ 601 A 1 HETATM 11 C C4 VRQ . . . C 3 45.811 -8.91 23.48 1 72.02 ? C4 VRQ 601 A 1 HETATM 12 C C2 VRQ . . . C 3 44.367 -7.703 21.906 1 69.44 ? C2 VRQ 601 A 1 HETATM 13 C C15 VRQ . . . C 3 46.07 -0.925 23.392 1 64.38 ? C15 VRQ 601 A 1 HETATM 14 C C16 VRQ . . . C 3 46.585 -1.109 24.674 1 66.64 ? C16 VRQ 601 A 1 HETATM 15 C C17 VRQ . . . C 3 47.231 -2.305 24.999 1 69.15 ? C17 VRQ 601 A 1 HETATM 16 C C18 VRQ . . . C 3 47.356 -3.289 24.029 1 66.82 ? C18 VRQ 601 A 1 HETATM 17 C C19 VRQ . . . C 3 48.014 -4.465 24.338 1 66.79 ? C19 VRQ 601 A 1 HETATM 18 C C22 VRQ . . . C 3 49.033 -3.925 27.947 1 69.72 ? C22 VRQ 601 A 1 HETATM 19 C C1 VRQ . . . C 3 43.96 -9.191 19.992 1 68.18 ? C1 VRQ 601 A 1 HETATM 20 C C14 VRQ . . . C 3 46.191 -1.922 22.433 1 66.39 ? C14 VRQ 601 A 1 HETATM 21 C C20 VRQ . . . C 3 48.548 -4.673 25.602 1 67.99 ? C20 VRQ 601 A 1 HETATM 22 C C21 VRQ . . . C 3 48.438 -3.698 26.561 1 68.91 ? C21 VRQ 601 A 1 HETATM 23 C C23 VRQ . . . C 3 47.78 -2.511 26.259 1 72.77 ? C23 VRQ 601 A 1 HETATM 24 C C7 VRQ . . . C 3 45.727 -4.175 19.871 1 63.36 ? C7 VRQ 601 A 1 HETATM 25 N N2 VRQ . . . C 3 49.467 -4.084 28.981 1 74.21 ? N2 VRQ 601 A 1 HETATM 26 O O1 VRQ . . . C 3 44.337 -6.652 22.455 1 65.58 ? O1 VRQ 601 A 1 HETATM 27 O O2 VRQ . . . C 3 44.838 -4.929 20.655 1 71.36 ? O2 VRQ 601 A 1 HETATM 28 O O3 VRQ . . . C 3 47.017 -4.124 21.814 1 65.69 ? O3 VRQ 601 A 1 HETATM 29 CL CL1 VRQ . . . C 3 45.98 -2.881 16.094 1 72.59 ? CL1 VRQ 601 A 1 HETATM 30 H H11 VRQ . . . C 3 44.571 -4.221 18.085 1 74.07 ? H11 VRQ 601 A 1 HETATM 31 H H12 VRQ . . . C 3 48.297 -2.176 17.836 1 73.52 ? H12 VRQ 601 A 1 HETATM 32 H H13 VRQ . . . C 3 48.741 -2.703 20.221 1 77.37 ? H13 VRQ 601 A 1 HETATM 33 H H9 VRQ . . . C 3 42.842 -5.091 20.874 1 81.63 ? H9 VRQ 601 A 1 HETATM 34 H H10 VRQ . . . C 3 43.418 -4.694 19.246 1 81.63 ? H10 VRQ 601 A 1 HETATM 35 H H4 VRQ . . . C 3 44.395 -9.92 22.35 1 84.87 ? H4 VRQ 601 A 1 HETATM 36 H H7 VRQ . . . C 3 42.338 -6.931 19.584 1 90.65 ? H7 VRQ 601 A 1 HETATM 37 H H8 VRQ . . . C 3 43.893 -6.887 18.736 1 90.65 ? H8 VRQ 601 A 1 HETATM 38 H H6 VRQ . . . C 3 46.263 -7.952 23.734 1 86.41 ? H6 VRQ 601 A 1 HETATM 39 H H5 VRQ . . . C 3 46.129 -9.831 23.96 1 86.41 ? H5 VRQ 601 A 1 HETATM 40 H H15 VRQ . . . C 3 45.571 0.002 23.143 1 77.23 ? H15 VRQ 601 A 1 HETATM 41 H H16 VRQ . . . C 3 46.486 -0.327 25.417 1 79.94 ? H16 VRQ 601 A 1 HETATM 42 H H17 VRQ . . . C 3 48.114 -5.235 23.583 1 80.12 ? H17 VRQ 601 A 1 HETATM 43 H H3 VRQ . . . C 3 44.949 -9.609 20.151 1 81.79 ? H3 VRQ 601 A 1 HETATM 44 H H1 VRQ . . . C 3 43.754 -9.144 18.926 1 81.79 ? H1 VRQ 601 A 1 HETATM 45 H H2 VRQ . . . C 3 43.219 -9.821 20.476 1 81.79 ? H2 VRQ 601 A 1 HETATM 46 H H14 VRQ . . . C 3 45.778 -1.776 21.442 1 79.64 ? H14 VRQ 601 A 1 HETATM 47 H H18 VRQ . . . C 3 49.052 -5.604 25.831 1 81.56 ? H18 VRQ 601 A 1 HETATM 48 H H19 VRQ . . . C 3 47.694 -1.738 27.014 1 87.3 ? H19 VRQ 601 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 48 #