data_8U6M # _model_server_result.job_id J7FnscyRxdWNdlG9emrJKA _model_server_result.datetime_utc '2024-11-14 13:50:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u6m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 8U6M # _exptl.entry_id 8U6M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 397.855 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[2-(2-{[(4R)-6-chloro-2-cyanoindolizin-8-yl]oxy}phenoxy)ethyl]-N-methylpropanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.2 _cell.angle_gamma 90 _cell.entry_id 8U6M _cell.length_a 226.143 _cell.length_b 69.736 _cell.length_c 105.246 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8U6M _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H20 Cl N3 O3' _chem_comp.formula_weight 397.855 _chem_comp.id VW2 _chem_comp.mon_nstd_flag . _chem_comp.name N-[2-(2-{[(4R)-6-chloro-2-cyanoindolizin-8-yl]oxy}phenoxy)ethyl]-N-methylpropanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C5 VW2 sing 376 n n N1 C1 VW2 sing 377 n n N1 C2 VW2 sing 378 n n C4 C3 VW2 sing 379 n n C5 C6 VW2 sing 380 n n C6 O2 VW2 sing 381 n n C7 C8 VW2 doub 382 n y C7 O2 VW2 sing 383 n n C7 C12 VW2 sing 384 n y C8 C9 VW2 sing 385 n y C10 C9 VW2 doub 386 n y C10 C11 VW2 sing 387 n y C2 O1 VW2 doub 388 n n C2 C3 VW2 sing 389 n n O3 C12 VW2 sing 390 n n O3 C13 VW2 sing 391 n n C11 C12 VW2 doub 392 n y C13 C14 VW2 doub 393 n y C13 C17 VW2 sing 394 n y C14 C15 VW2 sing 395 n y C15 C16 VW2 doub 396 n y C15 CL1 VW2 sing 397 n n C16 N2 VW2 sing 398 n y C17 C18 VW2 doub 399 n y C17 N2 VW2 sing 400 n y C18 C19 VW2 sing 401 n y C19 C20 VW2 sing 402 n n C19 C21 VW2 doub 403 n y C20 N3 VW2 trip 404 n n C21 N2 VW2 sing 405 n y C4 H5 VW2 sing 406 n n C4 H6 VW2 sing 407 n n C4 H19 VW2 sing 408 n n C5 H8 VW2 sing 409 n n C5 H7 VW2 sing 410 n n C6 H9 VW2 sing 411 n n C6 H10 VW2 sing 412 n n C8 H11 VW2 sing 413 n n C10 H13 VW2 sing 414 n n C1 H1 VW2 sing 415 n n C1 H2 VW2 sing 416 n n C1 H3 VW2 sing 417 n n C3 H4 VW2 sing 418 n n C3 H20 VW2 sing 419 n n C9 H12 VW2 sing 420 n n C11 H14 VW2 sing 421 n n C14 H15 VW2 sing 422 n n C16 H16 VW2 sing 423 n n C18 H17 VW2 sing 424 n n C21 H18 VW2 sing 425 n n # _atom_sites.entry_id 8U6M _atom_sites.fract_transf_matrix[1][1] 0.004422 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001285 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01434 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009894 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 VW2 A 1 601 601 VW2 J51 . D 4 HOH A 1 701 12 HOH HOH . D 4 HOH A 2 702 35 HOH HOH . D 4 HOH A 3 703 23 HOH HOH . D 4 HOH A 4 704 28 HOH HOH . D 4 HOH A 5 705 9 HOH HOH . D 4 HOH A 6 706 5 HOH HOH . D 4 HOH A 7 707 2 HOH HOH . D 4 HOH A 8 708 22 HOH HOH . D 4 HOH A 9 709 27 HOH HOH . D 4 HOH A 10 710 30 HOH HOH . D 4 HOH A 11 711 29 HOH HOH . D 4 HOH A 12 712 10 HOH HOH . D 4 HOH A 13 713 18 HOH HOH . E 4 HOH B 1 501 26 HOH HOH . E 4 HOH B 2 502 14 HOH HOH . E 4 HOH B 3 503 34 HOH HOH . E 4 HOH B 4 504 4 HOH HOH . E 4 HOH B 5 505 13 HOH HOH . E 4 HOH B 6 506 17 HOH HOH . E 4 HOH B 7 507 1 HOH HOH . E 4 HOH B 8 508 24 HOH HOH . E 4 HOH B 9 509 19 HOH HOH . E 4 HOH B 10 510 7 HOH HOH . E 4 HOH B 11 511 11 HOH HOH . E 4 HOH B 12 512 6 HOH HOH . E 4 HOH B 13 513 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 VW2 . . . C 3 44.858 -34.593 23.511 1 79.7 ? N1 VW2 601 A 1 HETATM 2 C C4 VW2 . . . C 3 43.906 -36.917 20.874 1 87.73 ? C4 VW2 601 A 1 HETATM 3 C C5 VW2 . . . C 3 44.037 -33.541 22.786 1 79.68 ? C5 VW2 601 A 1 HETATM 4 C C6 VW2 . . . C 3 44.685 -33.194 21.389 1 82.53 ? C6 VW2 601 A 1 HETATM 5 C C7 VW2 . . . C 3 46.574 -31.595 21.012 1 80.71 ? C7 VW2 601 A 1 HETATM 6 C C8 VW2 . . . C 3 46.678 -31.298 19.641 1 72.91 ? C8 VW2 601 A 1 HETATM 7 C C10 VW2 . . . C 3 48.971 -30.661 20.04 1 82.4 ? C10 VW2 601 A 1 HETATM 8 C C1 VW2 . . . C 3 45.53 -34.35 24.796 1 86.75 ? C1 VW2 601 A 1 HETATM 9 C C2 VW2 . . . C 3 45.007 -35.994 22.995 1 87.32 ? C2 VW2 601 A 1 HETATM 10 O O1 VW2 . . . C 3 45.734 -36.742 23.459 1 93.85 ? O1 VW2 601 A 1 HETATM 11 C C3 VW2 . . . C 3 44.107 -36.068 21.779 1 83.63 ? C3 VW2 601 A 1 HETATM 12 O O2 VW2 . . . C 3 45.382 -31.996 21.645 1 80.01 ? O2 VW2 601 A 1 HETATM 13 O O3 VW2 . . . C 3 47.445 -31.711 23.26 1 75.45 ? O3 VW2 601 A 1 HETATM 14 C C9 VW2 . . . C 3 47.891 -30.836 19.169 1 78.31 ? C9 VW2 601 A 1 HETATM 15 C C11 VW2 . . . C 3 48.841 -30.937 21.402 1 79.95 ? C11 VW2 601 A 1 HETATM 16 C C12 VW2 . . . C 3 47.624 -31.382 21.889 1 78.31 ? C12 VW2 601 A 1 HETATM 17 C C13 VW2 . . . C 3 47.398 -30.635 24.158 1 85.27 ? C13 VW2 601 A 1 HETATM 18 C C14 VW2 . . . C 3 46.77 -29.512 23.712 1 89.63 ? C14 VW2 601 A 1 HETATM 19 C C15 VW2 . . . C 3 46.645 -28.435 24.529 1 88.91 ? C15 VW2 601 A 1 HETATM 20 C C16 VW2 . . . C 3 47.145 -28.475 25.823 1 88.57 ? C16 VW2 601 A 1 HETATM 21 C C17 VW2 . . . C 3 47.9 -30.673 25.497 1 89.61 ? C17 VW2 601 A 1 HETATM 22 C C18 VW2 . . . C 3 48.562 -31.601 26.33 1 89.27 ? C18 VW2 601 A 1 HETATM 23 C C19 VW2 . . . C 3 48.786 -30.941 27.605 1 86.39 ? C19 VW2 601 A 1 HETATM 24 C C20 VW2 . . . C 3 49.468 -31.463 28.881 1 89.33 ? C20 VW2 601 A 1 HETATM 25 C C21 VW2 . . . C 3 48.237 -29.66 27.465 1 86.94 ? C21 VW2 601 A 1 HETATM 26 N N2 VW2 . . . C 3 47.764 -29.602 26.268 1 90.14 ? N2 VW2 601 A 1 HETATM 27 N N3 VW2 . . . C 3 49.975 -31.841 29.836 1 92.14 ? N3 VW2 601 A 1 HETATM 28 CL CL1 VW2 . . . C 3 45.826 -26.982 23.887 1 105.52 ? CL1 VW2 601 A 1 HETATM 29 H H5 VW2 . . . C 3 43.3 -37.395 20.156 1 105.22 ? H5 VW2 601 A 1 HETATM 30 H H6 VW2 . . . C 3 42.815 -36.974 21.216 1 105.22 ? H6 VW2 601 A 1 HETATM 31 H H8 VW2 . . . C 3 43.993 -32.639 23.394 1 95.55 ? H8 VW2 601 A 1 HETATM 32 H H7 VW2 . . . C 3 43.028 -33.922 22.627 1 95.55 ? H7 VW2 601 A 1 HETATM 33 H H9 VW2 . . . C 3 43.92 -33.045 20.628 1 98.97 ? H9 VW2 601 A 1 HETATM 34 H H10 VW2 . . . C 3 45.368 -33.981 21.068 1 98.97 ? H10 VW2 601 A 1 HETATM 35 H H11 VW2 . . . C 3 45.83 -31.428 18.974 1 87.43 ? H11 VW2 601 A 1 HETATM 36 H H13 VW2 . . . C 3 49.923 -30.307 19.651 1 98.82 ? H13 VW2 601 A 1 HETATM 37 H H1 VW2 . . . C 3 45.232 -33.376 25.182 1 104.04 ? H1 VW2 601 A 1 HETATM 38 H H2 VW2 . . . C 3 46.609 -34.367 24.65 1 104.04 ? H2 VW2 601 A 1 HETATM 39 H H3 VW2 . . . C 3 45.246 -35.125 25.506 1 104.04 ? H3 VW2 601 A 1 HETATM 40 H H4 VW2 . . . C 3 43.554 -36.258 22.694 1 100.29 ? H4 VW2 601 A 1 HETATM 41 H H12 VW2 . . . C 3 48.007 -30.608 18.112 1 93.91 ? H12 VW2 601 A 1 HETATM 42 H H14 VW2 . . . C 3 49.685 -30.804 22.072 1 95.88 ? H14 VW2 601 A 1 HETATM 43 H H15 VW2 . . . C 3 46.368 -29.478 22.7 1 107.49 ? H15 VW2 601 A 1 HETATM 44 H H16 VW2 . . . C 3 47.042 -27.611 26.479 1 106.22 ? H16 VW2 601 A 1 HETATM 45 H H17 VW2 . . . C 3 48.85 -32.617 26.068 1 107.07 ? H17 VW2 601 A 1 HETATM 46 H H18 VW2 . . . C 3 48.215 -28.872 28.216 1 104.27 ? H18 VW2 601 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 46 #