data_8U6N # _model_server_result.job_id OZQqoxI2b8f6it2eCrTgWQ _model_server_result.datetime_utc '2025-01-10 13:34:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u6n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 8U6N # _exptl.entry_id 8U6N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 360.406 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-{2-[(6-cyanonaphthalen-1-yl)oxy]phenoxy}-N,N-dimethylpropanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.67 _cell.angle_gamma 90 _cell.entry_id 8U6N _cell.length_a 209.572 _cell.length_b 65.651 _cell.length_c 100.573 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8U6N _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H20 N2 O3' _chem_comp.formula_weight 360.406 _chem_comp.id VWK _chem_comp.mon_nstd_flag . _chem_comp.name 3-{2-[(6-cyanonaphthalen-1-yl)oxy]phenoxy}-N,N-dimethylpropanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C7 VWK doub 376 n y C8 C9 VWK sing 377 n y C7 C6 VWK sing 378 n y C9 C10 VWK doub 379 n y C5 O2 VWK sing 380 n n C5 C4 VWK sing 381 n n C6 O2 VWK sing 382 n n C6 C11 VWK doub 383 n y C10 C11 VWK sing 384 n y C11 O3 VWK sing 385 n n C4 C1 VWK sing 386 n n O1 C1 VWK doub 387 n n C1 N1 VWK sing 388 n n O3 C12 VWK sing 389 n n C13 C12 VWK doub 390 n y C13 C14 VWK sing 391 n y N1 C3 VWK sing 392 n n N1 C2 VWK sing 393 n n C12 C17 VWK sing 394 n y C14 C15 VWK doub 395 n y C17 C18 VWK doub 396 n y C17 C16 VWK sing 397 n y C18 C19 VWK sing 398 n y C15 C16 VWK sing 399 n y C16 C22 VWK doub 400 n y C19 C20 VWK doub 401 n y C22 C20 VWK sing 402 n y C20 C21 VWK sing 403 n n C21 N2 VWK trip 404 n n C2 H1 VWK sing 405 n n C2 H2 VWK sing 406 n n C2 H3 VWK sing 407 n n C3 H4 VWK sing 408 n n C3 H5 VWK sing 409 n n C3 H6 VWK sing 410 n n C10 H7 VWK sing 411 n n C13 H8 VWK sing 412 n n C14 H9 VWK sing 413 n n C15 H10 VWK sing 414 n n C18 H11 VWK sing 415 n n C19 H12 VWK sing 416 n n C22 H13 VWK sing 417 n n C4 H14 VWK sing 418 n n C4 H15 VWK sing 419 n n C5 H16 VWK sing 420 n n C5 H17 VWK sing 421 n n C7 H18 VWK sing 422 n n C8 H19 VWK sing 423 n n C9 H20 VWK sing 424 n n # _atom_sites.entry_id 8U6N _atom_sites.fract_transf_matrix[1][1] 0.004772 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002192 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015232 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010942 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 VWK A 1 601 601 VWK VWK . D 4 HOH A 1 701 4 HOH HOH . D 4 HOH A 2 702 8 HOH HOH . D 4 HOH A 3 703 6 HOH HOH . D 4 HOH A 4 704 5 HOH HOH . E 4 HOH B 1 501 1 HOH HOH . E 4 HOH B 2 502 7 HOH HOH . E 4 HOH B 3 503 2 HOH HOH . E 4 HOH B 4 504 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 VWK . . . C 3 44.172 -55.34 20.808 1 65.66 ? C1 VWK 601 A 1 HETATM 2 N N1 VWK . . . C 3 44.922 -55.184 22.051 1 67.89 ? N1 VWK 601 A 1 HETATM 3 C C2 VWK . . . C 3 44.926 -53.915 22.747 1 70.21 ? C2 VWK 601 A 1 HETATM 4 N N2 VWK . . . C 3 48.888 -51.87 28.517 1 74.06 ? N2 VWK 601 A 1 HETATM 5 C C3 VWK . . . C 3 45.661 -56.308 22.591 1 68.21 ? C3 VWK 601 A 1 HETATM 6 O O3 VWK . . . C 3 46.969 -51.793 21.299 1 72.47 ? O3 VWK 601 A 1 HETATM 7 C C10 VWK . . . C 3 47.999 -50.534 19.492 1 67.1 ? C10 VWK 601 A 1 HETATM 8 C C11 VWK . . . C 3 46.947 -51.291 19.998 1 68.59 ? C11 VWK 601 A 1 HETATM 9 C C12 VWK . . . C 3 46.65 -50.845 22.259 1 68.49 ? C12 VWK 601 A 1 HETATM 10 C C13 VWK . . . C 3 45.898 -49.738 21.968 1 63.32 ? C13 VWK 601 A 1 HETATM 11 C C14 VWK . . . C 3 45.596 -48.818 22.965 1 72.79 ? C14 VWK 601 A 1 HETATM 12 C C15 VWK . . . C 3 46.044 -49.023 24.272 1 73.34 ? C15 VWK 601 A 1 HETATM 13 C C16 VWK . . . C 3 46.806 -50.152 24.55 1 73.58 ? C16 VWK 601 A 1 HETATM 14 C C17 VWK . . . C 3 47.102 -51.067 23.544 1 70.09 ? C17 VWK 601 A 1 HETATM 15 C C18 VWK . . . C 3 47.846 -52.209 23.809 1 71.89 ? C18 VWK 601 A 1 HETATM 16 C C19 VWK . . . C 3 48.299 -52.429 25.094 1 75.87 ? C19 VWK 601 A 1 HETATM 17 C C20 VWK . . . C 3 47.997 -51.502 26.076 1 71.9 ? C20 VWK 601 A 1 HETATM 18 C C21 VWK . . . C 3 48.511 -51.708 27.475 1 69.93 ? C21 VWK 601 A 1 HETATM 19 C C22 VWK . . . C 3 47.267 -50.364 25.819 1 71.79 ? C22 VWK 601 A 1 HETATM 20 C C4 VWK . . . C 3 43.364 -54.182 20.204 1 70.37 ? C4 VWK 601 A 1 HETATM 21 C C5 VWK . . . C 3 44.204 -53.41 19.165 1 75.44 ? C5 VWK 601 A 1 HETATM 22 C C6 VWK . . . C 3 45.857 -51.631 19.224 1 66.04 ? C6 VWK 601 A 1 HETATM 23 C C7 VWK . . . C 3 45.747 -51.199 17.927 1 64.57 ? C7 VWK 601 A 1 HETATM 24 C C8 VWK . . . C 3 46.786 -50.429 17.406 1 70.33 ? C8 VWK 601 A 1 HETATM 25 C C9 VWK . . . C 3 47.898 -50.097 18.179 1 71.61 ? C9 VWK 601 A 1 HETATM 26 O O1 VWK . . . C 3 44.167 -56.39 20.265 1 67.62 ? O1 VWK 601 A 1 HETATM 27 O O2 VWK . . . C 3 44.88 -52.392 19.866 1 71.41 ? O2 VWK 601 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 214 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #