data_8U6O # _model_server_result.job_id g0BQKBDzarQS2ow2-AYrAA _model_server_result.datetime_utc '2025-01-25 12:01:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u6o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 8U6O # _exptl.entry_id 8U6O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.443 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-{2-[3-oxo-3-(pyrrolidin-1-yl)propoxy]phenoxy}naphthalene-2-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.67 _cell.angle_gamma 90 _cell.entry_id 8U6O _cell.length_a 224.188 _cell.length_b 68.031 _cell.length_c 103.803 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8U6O _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H22 N2 O3' _chem_comp.formula_weight 386.443 _chem_comp.id VWB _chem_comp.mon_nstd_flag . _chem_comp.name 5-{2-[3-oxo-3-(pyrrolidin-1-yl)propoxy]phenoxy}naphthalene-2-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C9 VWB doub 376 n y C10 C11 VWB sing 377 n y C9 C8 VWB sing 378 n y C11 C12 VWB doub 379 n y C7 C6 VWB sing 380 n n C7 O2 VWB sing 381 n n C8 O2 VWB sing 382 n n C8 C13 VWB doub 383 n y O1 C1 VWB doub 384 n n C12 C13 VWB sing 385 n y C6 C1 VWB sing 386 n n C13 O3 VWB sing 387 n n C1 N1 VWB sing 388 n n O3 C14 VWB sing 389 n n N1 C5 VWB sing 390 n n N1 C2 VWB sing 391 n n C15 C14 VWB doub 392 n y C15 C16 VWB sing 393 n y C5 C4 VWB sing 394 n n C14 C19 VWB sing 395 n y C2 C3 VWB sing 396 n n C16 C17 VWB doub 397 n y C3 C4 VWB sing 398 n n C19 C20 VWB doub 399 n y C19 C18 VWB sing 400 n y C20 C21 VWB sing 401 n y C17 C18 VWB sing 402 n y C18 C24 VWB doub 403 n y C21 C22 VWB doub 404 n y C24 C22 VWB sing 405 n y C22 C23 VWB sing 406 n n C23 N2 VWB trip 407 n n C24 H1 VWB sing 408 n n C21 H2 VWB sing 409 n n C20 H3 VWB sing 410 n n C3 H4 VWB sing 411 n n C3 H5 VWB sing 412 n n C4 H6 VWB sing 413 n n C4 H7 VWB sing 414 n n C6 H8 VWB sing 415 n n C6 H9 VWB sing 416 n n C5 H10 VWB sing 417 n n C5 H11 VWB sing 418 n n C2 H12 VWB sing 419 n n C2 H13 VWB sing 420 n n C7 H14 VWB sing 421 n n C7 H15 VWB sing 422 n n C9 H16 VWB sing 423 n n C12 H17 VWB sing 424 n n C11 H18 VWB sing 425 n n C10 H19 VWB sing 426 n n C15 H20 VWB sing 427 n n C16 H21 VWB sing 428 n n C17 H22 VWB sing 429 n n # _atom_sites.entry_id 8U6O _atom_sites.fract_transf_matrix[1][1] 0.004461 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001421 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014699 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010111 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 VWB A 1 601 601 VWB J53 . D 4 HOH A 1 701 9 HOH HOH . D 4 HOH A 2 702 17 HOH HOH . D 4 HOH A 3 703 2 HOH HOH . D 4 HOH A 4 704 4 HOH HOH . D 4 HOH A 5 705 6 HOH HOH . D 4 HOH A 6 706 5 HOH HOH . D 4 HOH A 7 707 1 HOH HOH . E 4 HOH B 1 501 18 HOH HOH . E 4 HOH B 2 502 8 HOH HOH . E 4 HOH B 3 503 11 HOH HOH . E 4 HOH B 4 504 15 HOH HOH . E 4 HOH B 5 505 12 HOH HOH . E 4 HOH B 6 506 16 HOH HOH . E 4 HOH B 7 507 19 HOH HOH . E 4 HOH B 8 508 13 HOH HOH . E 4 HOH B 9 509 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 VWB . . . C 3 47.765 -14.031 21.683 1 64.23 ? O3 VWB 601 A 1 HETATM 2 C C24 VWB . . . C 3 48.151 -12.238 26.082 1 71.38 ? C24 VWB 601 A 1 HETATM 3 C C23 VWB . . . C 3 49.438 -13.506 27.845 1 70.19 ? C23 VWB 601 A 1 HETATM 4 C C21 VWB . . . C 3 49.159 -14.335 25.507 1 67.63 ? C21 VWB 601 A 1 HETATM 5 O O1 VWB . . . C 3 43.999 -18.22 19.759 1 78.95 ? O1 VWB 601 A 1 HETATM 6 C C22 VWB . . . C 3 48.896 -13.348 26.432 1 66.5 ? C22 VWB 601 A 1 HETATM 7 C C20 VWB . . . C 3 48.683 -14.218 24.218 1 65.69 ? C20 VWB 601 A 1 HETATM 8 C C19 VWB . . . C 3 47.941 -13.112 23.86 1 65.7 ? C19 VWB 601 A 1 HETATM 9 C C3 VWB . . . C 3 46.105 -16.881 23.639 1 71.77 ? C3 VWB 601 A 1 HETATM 10 O O2 VWB . . . C 3 45.62 -14.323 20.045 1 75.15 ? O2 VWB 601 A 1 HETATM 11 C C1 VWB . . . C 3 44.189 -17.271 20.435 1 77.14 ? C1 VWB 601 A 1 HETATM 12 C C4 VWB . . . C 3 45.82 -18.384 23.692 1 74.12 ? C4 VWB 601 A 1 HETATM 13 C C8 VWB . . . C 3 46.779 -13.738 19.538 1 73.17 ? C8 VWB 601 A 1 HETATM 14 C C6 VWB . . . C 3 43.843 -15.884 19.913 1 78.96 ? C6 VWB 601 A 1 HETATM 15 C C5 VWB . . . C 3 45.129 -18.687 22.363 1 72.94 ? C5 VWB 601 A 1 HETATM 16 C C2 VWB . . . C 3 45.043 -16.355 22.68 1 71.23 ? C2 VWB 601 A 1 HETATM 17 C C7 VWB . . . C 3 45.071 -15.302 19.222 1 74.73 ? C7 VWB 601 A 1 HETATM 18 C C9 VWB . . . C 3 46.841 -13.31 18.229 1 72.71 ? C9 VWB 601 A 1 HETATM 19 C C12 VWB . . . C 3 49.028 -13.006 19.906 1 69.36 ? C12 VWB 601 A 1 HETATM 20 C C11 VWB . . . C 3 49.096 -12.577 18.596 1 70.17 ? C11 VWB 601 A 1 HETATM 21 C C10 VWB . . . C 3 48.003 -12.73 17.76 1 72.23 ? C10 VWB 601 A 1 HETATM 22 C C13 VWB . . . C 3 47.862 -13.58 20.372 1 71.4 ? C13 VWB 601 A 1 HETATM 23 C C14 VWB . . . C 3 47.47 -13 22.571 1 67.2 ? C14 VWB 601 A 1 HETATM 24 C C15 VWB . . . C 3 46.724 -11.901 22.201 1 65.4 ? C15 VWB 601 A 1 HETATM 25 C C16 VWB . . . C 3 46.459 -10.911 23.124 1 72.89 ? C16 VWB 601 A 1 HETATM 26 C C17 VWB . . . C 3 46.93 -11.017 24.419 1 73.02 ? C17 VWB 601 A 1 HETATM 27 C C18 VWB . . . C 3 47.674 -12.123 24.791 1 70.21 ? C18 VWB 601 A 1 HETATM 28 N N1 VWB . . . C 3 44.759 -17.429 21.758 1 70.66 ? N1 VWB 601 A 1 HETATM 29 N N2 VWB . . . C 3 49.845 -13.634 28.889 1 71.77 ? N2 VWB 601 A 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #