data_8U6P # _model_server_result.job_id qPsLwIp-C9KFx-Hmf_pqzA _model_server_result.datetime_utc '2024-11-22 06:34:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u6p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 8U6P # _exptl.entry_id 8U6P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 349.383 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(2-{[(4S)-2-cyanoindolizin-8-yl]oxy}phenoxy)-N,N-dimethylpropanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.67 _cell.angle_gamma 90 _cell.entry_id 8U6P _cell.length_a 222.208 _cell.length_b 67.384 _cell.length_c 103.193 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8U6P _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 445 A ASP 443 1_555 F MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? metalc ? metalc2 A OD2 ASP 445 A ASP 443 1_555 F MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.818 ? # _chem_comp.formula 'C20 H19 N3 O3' _chem_comp.formula_weight 349.383 _chem_comp.id VOI _chem_comp.mon_nstd_flag . _chem_comp.name 3-(2-{[(4S)-2-cyanoindolizin-8-yl]oxy}phenoxy)-N,N-dimethylpropanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C7 VOI doub 380 n y C8 C9 VOI sing 381 n y C7 C6 VOI sing 382 n y C9 C10 VOI doub 383 n y C5 O2 VOI sing 384 n n C5 C4 VOI sing 385 n n C6 O2 VOI sing 386 n n C6 C11 VOI doub 387 n y C10 C11 VOI sing 388 n y C4 C1 VOI sing 389 n n C11 O3 VOI sing 390 n n O1 C1 VOI doub 391 n n C1 N1 VOI sing 392 n n O3 C12 VOI sing 393 n n C13 C12 VOI doub 394 n y C13 C14 VOI sing 395 n y N1 C2 VOI sing 396 n n N1 C3 VOI sing 397 n n C12 C16 VOI sing 398 n y C14 C15 VOI doub 399 n y C16 C17 VOI doub 400 n y C16 N2 VOI sing 401 n y C15 N2 VOI sing 402 n y C17 C18 VOI sing 403 n y N2 C20 VOI sing 404 n y C20 C18 VOI doub 405 n y C18 C19 VOI sing 406 n n C19 N3 VOI trip 407 n n C10 H1 VOI sing 408 n n C13 H2 VOI sing 409 n n C14 H3 VOI sing 410 n n C15 H4 VOI sing 411 n n C17 H5 VOI sing 412 n n C2 H6 VOI sing 413 n n C2 H7 VOI sing 414 n n C2 H8 VOI sing 415 n n C20 H9 VOI sing 416 n n C3 H10 VOI sing 417 n n C3 H11 VOI sing 418 n n C3 H12 VOI sing 419 n n C4 H13 VOI sing 420 n n C4 H14 VOI sing 421 n n C5 H15 VOI sing 422 n n C5 H16 VOI sing 423 n n C7 H17 VOI sing 424 n n C8 H18 VOI sing 425 n n C9 H19 VOI sing 426 n n # _atom_sites.entry_id 8U6P _atom_sites.fract_transf_matrix[1][1] 0.0045 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001434 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01484 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01017 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 VOI A 1 601 601 VOI J54 . D 4 PO4 A 1 602 1 PO4 PO4 . E 4 PO4 A 1 603 2 PO4 PO4 . F 5 MG A 1 604 1 MG MG . G 6 HOH A 1 701 21 HOH HOH . G 6 HOH A 2 702 13 HOH HOH . G 6 HOH A 3 703 26 HOH HOH . G 6 HOH A 4 704 19 HOH HOH . G 6 HOH A 5 705 22 HOH HOH . G 6 HOH A 6 706 28 HOH HOH . G 6 HOH A 7 707 8 HOH HOH . G 6 HOH A 8 708 1 HOH HOH . G 6 HOH A 9 709 2 HOH HOH . G 6 HOH A 10 710 7 HOH HOH . G 6 HOH A 11 711 10 HOH HOH . G 6 HOH A 12 712 6 HOH HOH . G 6 HOH A 13 714 5 HOH HOH . G 6 HOH A 14 715 29 HOH HOH . G 6 HOH A 15 716 20 HOH HOH . H 6 HOH B 1 501 12 HOH HOH . H 6 HOH B 2 502 16 HOH HOH . H 6 HOH B 3 503 25 HOH HOH . H 6 HOH B 4 504 18 HOH HOH . H 6 HOH B 5 505 17 HOH HOH . H 6 HOH B 6 506 11 HOH HOH . H 6 HOH B 7 507 23 HOH HOH . H 6 HOH B 8 508 27 HOH HOH . H 6 HOH B 9 509 24 HOH HOH . H 6 HOH B 10 510 15 HOH HOH . H 6 HOH B 11 511 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 VOI . . . C 3 44.215 -62.172 21.36 1 59.92 ? C1 VOI 601 A 1 HETATM 2 C C10 VOI . . . C 3 48.477 -57.834 20.201 1 59.65 ? C10 VOI 601 A 1 HETATM 3 C C11 VOI . . . C 3 47.279 -58.416 20.569 1 59.88 ? C11 VOI 601 A 1 HETATM 4 C C12 VOI . . . C 3 46.804 -57.598 22.727 1 60.08 ? C12 VOI 601 A 1 HETATM 5 C C13 VOI . . . C 3 46.112 -56.499 22.301 1 58.53 ? C13 VOI 601 A 1 HETATM 6 C C14 VOI . . . C 3 45.902 -55.465 23.167 1 60.63 ? C14 VOI 601 A 1 HETATM 7 C C15 VOI . . . C 3 46.371 -55.527 24.475 1 57.6 ? C15 VOI 601 A 1 HETATM 8 C C16 VOI . . . C 3 47.255 -57.637 24.047 1 62.54 ? C16 VOI 601 A 1 HETATM 9 C C17 VOI . . . C 3 47.946 -58.582 24.777 1 56.08 ? C17 VOI 601 A 1 HETATM 10 C C18 VOI . . . C 3 48.129 -58.046 26.092 1 62.24 ? C18 VOI 601 A 1 HETATM 11 C C19 VOI . . . C 3 48.859 -58.74 27.245 1 63.15 ? C19 VOI 601 A 1 HETATM 12 C C2 VOI . . . C 3 44.686 -60.558 23.236 1 66.1 ? C2 VOI 601 A 1 HETATM 13 C C20 VOI . . . C 3 47.504 -56.781 26.078 1 65.25 ? C20 VOI 601 A 1 HETATM 14 C C3 VOI . . . C 3 45.351 -62.931 23.499 1 63.9 ? C3 VOI 601 A 1 HETATM 15 C C4 VOI . . . C 3 43.568 -61.076 20.501 1 60.32 ? C4 VOI 601 A 1 HETATM 16 C C5 VOI . . . C 3 44.567 -60.483 19.486 1 71.57 ? C5 VOI 601 A 1 HETATM 17 C C6 VOI . . . C 3 46.321 -58.75 19.61 1 60.61 ? C6 VOI 601 A 1 HETATM 18 C C7 VOI . . . C 3 46.521 -58.462 18.268 1 54.29 ? C7 VOI 601 A 1 HETATM 19 C C8 VOI . . . C 3 47.715 -57.866 17.916 1 60.81 ? C8 VOI 601 A 1 HETATM 20 C C9 VOI . . . C 3 48.681 -57.553 18.866 1 59.64 ? C9 VOI 601 A 1 HETATM 21 N N1 VOI . . . C 3 44.746 -61.892 22.683 1 64.57 ? N1 VOI 601 A 1 HETATM 22 N N2 VOI . . . C 3 47.042 -56.632 24.88 1 66.96 ? N2 VOI 601 A 1 HETATM 23 N N3 VOI . . . C 3 49.406 -59.265 28.097 1 65.99 ? N3 VOI 601 A 1 HETATM 24 O O1 VOI . . . C 3 44.274 -63.281 20.946 1 63.96 ? O1 VOI 601 A 1 HETATM 25 O O2 VOI . . . C 3 45.125 -59.326 20.06 1 65.52 ? O2 VOI 601 A 1 HETATM 26 O O3 VOI . . . C 3 47.051 -58.713 21.914 1 54.58 ? O3 VOI 601 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #