data_8U6R # _model_server_result.job_id CpAOQ1-bN-aRAbH9bWIPcA _model_server_result.datetime_utc '2025-01-10 13:35:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u6r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 8U6R # _exptl.entry_id 8U6R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 385.364 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(2-{[(4R)-2-cyanoindolizin-8-yl]oxy}phenoxy)-N-(2,2-difluoroethyl)propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.53 _cell.angle_gamma 90 _cell.entry_id 8U6R _cell.length_a 224.917 _cell.length_b 69.98 _cell.length_c 106.308 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8U6R _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H17 F2 N3 O3' _chem_comp.formula_weight 385.364 _chem_comp.id VP2 _chem_comp.mon_nstd_flag . _chem_comp.name 3-(2-{[(4R)-2-cyanoindolizin-8-yl]oxy}phenoxy)-N-(2,2-difluoroethyl)propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C7 VP2 doub 380 n y C8 C9 VP2 sing 381 n y C7 C6 VP2 sing 382 n y C9 C10 VP2 doub 383 n y C5 C4 VP2 sing 384 n n C5 O2 VP2 sing 385 n n C6 O2 VP2 sing 386 n n C6 C11 VP2 doub 387 n y C4 C1 VP2 sing 388 n n C10 C11 VP2 sing 389 n y O1 C1 VP2 doub 390 n n C11 O3 VP2 sing 391 n n C1 N1 VP2 sing 392 n n N1 C2 VP2 sing 393 n n O3 C12 VP2 sing 394 n n C13 C12 VP2 doub 395 n y C13 C14 VP2 sing 396 n y C2 C3 VP2 sing 397 n n F2 C3 VP2 sing 398 n n C12 C16 VP2 sing 399 n y C14 C15 VP2 doub 400 n y C3 F1 VP2 sing 401 n n C16 C17 VP2 doub 402 n y C16 N2 VP2 sing 403 n y C15 N2 VP2 sing 404 n y C17 C18 VP2 sing 405 n y N2 C20 VP2 sing 406 n y C20 C18 VP2 doub 407 n y C18 C19 VP2 sing 408 n n C19 N3 VP2 trip 409 n n C2 H1 VP2 sing 410 n n C2 H2 VP2 sing 411 n n N1 H3 VP2 sing 412 n n C15 H4 VP2 sing 413 n n C17 H5 VP2 sing 414 n n C3 H6 VP2 sing 415 n n C5 H7 VP2 sing 416 n n C5 H8 VP2 sing 417 n n C4 H9 VP2 sing 418 n n C4 H10 VP2 sing 419 n n C7 H11 VP2 sing 420 n n C10 H12 VP2 sing 421 n n C13 H13 VP2 sing 422 n n C14 H14 VP2 sing 423 n n C9 H15 VP2 sing 424 n n C8 H16 VP2 sing 425 n n C20 H17 VP2 sing 426 n n # _atom_sites.entry_id 8U6R _atom_sites.fract_transf_matrix[1][1] 0.004446 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001236 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01429 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009763 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 VP2 A 1 601 601 VP2 J56 . D 4 PO4 B 1 501 1 PO4 PO4 . E 5 HOH A 1 701 9 HOH HOH . E 5 HOH A 2 702 5 HOH HOH . E 5 HOH A 3 703 3 HOH HOH . E 5 HOH A 4 704 6 HOH HOH . E 5 HOH A 5 705 17 HOH HOH . E 5 HOH A 6 706 15 HOH HOH . E 5 HOH A 7 707 10 HOH HOH . E 5 HOH A 8 708 2 HOH HOH . E 5 HOH A 9 709 1 HOH HOH . F 5 HOH B 1 601 7 HOH HOH . F 5 HOH B 2 602 18 HOH HOH . F 5 HOH B 3 603 14 HOH HOH . F 5 HOH B 4 604 11 HOH HOH . F 5 HOH B 5 605 12 HOH HOH . F 5 HOH B 6 606 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 VP2 . . . C 3 43.985 -18.958 22.109 1 104.04 ? O1 VP2 601 A 1 HETATM 2 C C2 VP2 . . . C 3 45.868 -18.099 24.361 1 99.36 ? C2 VP2 601 A 1 HETATM 3 N N1 VP2 . . . C 3 44.977 -17.358 23.49 1 106.52 ? N1 VP2 601 A 1 HETATM 4 C C1 VP2 . . . C 3 44.126 -17.818 22.401 1 104.1 ? C1 VP2 601 A 1 HETATM 5 C C15 VP2 . . . C 3 46.987 -11.643 26.146 1 101.36 ? C15 VP2 601 A 1 HETATM 6 C C16 VP2 . . . C 3 47.878 -13.767 25.78 1 99.32 ? C16 VP2 601 A 1 HETATM 7 C C17 VP2 . . . C 3 48.615 -14.672 26.555 1 97.16 ? C17 VP2 601 A 1 HETATM 8 C C3 VP2 . . . C 3 45.248 -19.107 25.273 1 109.28 ? C3 VP2 601 A 1 HETATM 9 N N2 VP2 . . . C 3 47.677 -12.731 26.563 1 104.34 ? N2 VP2 601 A 1 HETATM 10 C C5 VP2 . . . C 3 44.48 -15.802 20.948 1 100.13 ? C5 VP2 601 A 1 HETATM 11 C C4 VP2 . . . C 3 43.406 -16.693 21.649 1 101.78 ? C4 VP2 601 A 1 HETATM 12 C C6 VP2 . . . C 3 46.606 -14.756 21.377 1 86.88 ? C6 VP2 601 A 1 HETATM 13 C C7 VP2 . . . C 3 46.757 -14.519 20.022 1 88.56 ? C7 VP2 601 A 1 HETATM 14 N N3 VP2 . . . C 3 50.066 -14.905 30.058 1 103.43 ? N3 VP2 601 A 1 HETATM 15 C C10 VP2 . . . C 3 48.882 -14.032 21.804 1 97.12 ? C10 VP2 601 A 1 HETATM 16 C C11 VP2 . . . C 3 47.652 -14.498 22.267 1 95.37 ? C11 VP2 601 A 1 HETATM 17 C C12 VP2 . . . C 3 47.364 -13.711 24.48 1 98.48 ? C12 VP2 601 A 1 HETATM 18 C C13 VP2 . . . C 3 46.657 -12.632 24.041 1 101.27 ? C13 VP2 601 A 1 HETATM 19 C C14 VP2 . . . C 3 46.462 -11.582 24.867 1 99.49 ? C14 VP2 601 A 1 HETATM 20 C C9 VP2 . . . C 3 49.037 -13.802 20.445 1 94.48 ? C9 VP2 601 A 1 HETATM 21 C C8 VP2 . . . C 3 47.974 -14.042 19.569 1 93.35 ? C8 VP2 601 A 1 HETATM 22 C C18 VP2 . . . C 3 48.81 -14.05 27.845 1 102.4 ? C18 VP2 601 A 1 HETATM 23 C C19 VP2 . . . C 3 49.533 -14.555 29.109 1 105.27 ? C19 VP2 601 A 1 HETATM 24 C C20 VP2 . . . C 3 48.172 -12.805 27.746 1 102.94 ? C20 VP2 601 A 1 HETATM 25 F F1 VP2 . . . C 3 46.372 -19.443 26.013 1 111.06 ? F1 VP2 601 A 1 HETATM 26 F F2 VP2 . . . C 3 44.728 -20.062 24.42 1 107.63 ? F2 VP2 601 A 1 HETATM 27 O O2 VP2 . . . C 3 45.39 -15.218 21.861 1 91.73 ? O2 VP2 601 A 1 HETATM 28 O O3 VP2 . . . C 3 47.523 -14.78 23.631 1 87.33 ? O3 VP2 601 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #