data_8U6S # _model_server_result.job_id ZvWEKU-2yYBN9dn3lEZM0A _model_server_result.datetime_utc '2024-11-21 23:53:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u6s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 8U6S # _exptl.entry_id 8U6S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 391.42 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-8-{2-[3-(morpholin-4-yl)-3-oxopropoxy]phenoxy}indolizine-2-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.41 _cell.angle_gamma 90 _cell.entry_id 8U6S _cell.length_a 222.126 _cell.length_b 68.624 _cell.length_c 103.701 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8U6S _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 445 A ASP 443 1_555 F MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc2 A OD2 ASP 500 A ASP 498 1_555 F MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? # _chem_comp.formula 'C22 H21 N3 O4' _chem_comp.formula_weight 391.42 _chem_comp.id VPB _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-8-{2-[3-(morpholin-4-yl)-3-oxopropoxy]phenoxy}indolizine-2-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C9 VPB doub 380 n y C10 C11 VPB sing 381 n y C9 C8 VPB sing 382 n y C11 C12 VPB doub 383 n y C7 C6 VPB sing 384 n n C7 O3 VPB sing 385 n n C8 O3 VPB sing 386 n n C8 C13 VPB doub 387 n y O1 C1 VPB doub 388 n n C6 C1 VPB sing 389 n n C12 C13 VPB sing 390 n y C1 N1 VPB sing 391 n n C13 O4 VPB sing 392 n n N1 C2 VPB sing 393 n n N1 C5 VPB sing 394 n n O4 C14 VPB sing 395 n n C2 C3 VPB sing 396 n n C15 C14 VPB doub 397 n y C15 C16 VPB sing 398 n y C5 C4 VPB sing 399 n n C14 C18 VPB sing 400 n y C16 C17 VPB doub 401 n y C3 O2 VPB sing 402 n n O2 C4 VPB sing 403 n n C18 N2 VPB sing 404 n y C18 C19 VPB doub 405 n y C17 N2 VPB sing 406 n y N2 C22 VPB sing 407 n y C19 C20 VPB sing 408 n y C22 C20 VPB doub 409 n y C20 C21 VPB sing 410 n n C21 N3 VPB trip 411 n n C2 H1 VPB sing 412 n n C2 H2 VPB sing 413 n n C3 H3 VPB sing 414 n n C3 H4 VPB sing 415 n n C4 H5 VPB sing 416 n n C4 H6 VPB sing 417 n n C5 H7 VPB sing 418 n n C5 H8 VPB sing 419 n n C6 H9 VPB sing 420 n n C6 H10 VPB sing 421 n n C7 H11 VPB sing 422 n n C7 H12 VPB sing 423 n n C17 H13 VPB sing 424 n n C16 H14 VPB sing 425 n n C15 H15 VPB sing 426 n n C12 H16 VPB sing 427 n n C9 H17 VPB sing 428 n n C11 H18 VPB sing 429 n n C10 H19 VPB sing 430 n n C19 H20 VPB sing 431 n n C22 H21 VPB sing 432 n n # _atom_sites.entry_id 8U6S _atom_sites.fract_transf_matrix[1][1] 0.004502 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001412 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014572 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010106 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 VPB A 1 601 601 VPB J57 . D 4 PO4 A 1 602 1 PO4 PO4 . E 4 PO4 A 1 603 2 PO4 PO4 . F 5 MG A 1 604 1 MG MG . G 6 HOH A 1 701 3 HOH HOH . G 6 HOH A 2 702 1 HOH HOH . G 6 HOH A 3 703 5 HOH HOH . G 6 HOH A 4 704 13 HOH HOH . G 6 HOH A 5 705 6 HOH HOH . G 6 HOH A 6 706 2 HOH HOH . G 6 HOH A 7 707 14 HOH HOH . H 6 HOH B 1 501 9 HOH HOH . H 6 HOH B 2 502 7 HOH HOH . H 6 HOH B 3 503 11 HOH HOH . H 6 HOH B 4 504 8 HOH HOH . H 6 HOH B 5 505 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 VPB . . . C 3 43.254 -19.96 21.181 1 102.57 ? C1 VPB 601 A 1 HETATM 2 C C2 VPB . . . C 3 44.083 -21.51 22.968 1 105.7 ? C2 VPB 601 A 1 HETATM 3 C C3 VPB . . . C 3 44.771 -21.474 24.335 1 110.43 ? C3 VPB 601 A 1 HETATM 4 C C4 VPB . . . C 3 44.856 -19.226 24.591 1 99.67 ? C4 VPB 601 A 1 HETATM 5 C C5 VPB . . . C 3 43.856 -19.033 23.452 1 98.89 ? C5 VPB 601 A 1 HETATM 6 C C6 VPB . . . C 3 42.868 -18.567 20.672 1 97.92 ? C6 VPB 601 A 1 HETATM 7 C C7 VPB . . . C 3 44.045 -17.83 20.032 1 97.79 ? C7 VPB 601 A 1 HETATM 8 C C8 VPB . . . C 3 46.032 -16.691 20.407 1 91.53 ? C8 VPB 601 A 1 HETATM 9 O O1 VPB . . . C 3 43.145 -20.883 20.448 1 118.89 ? O1 VPB 601 A 1 HETATM 10 C C17 VPB . . . C 3 46.319 -13.48 25.154 1 97.64 ? C17 VPB 601 A 1 HETATM 11 C C16 VPB . . . C 3 45.846 -13.445 23.858 1 96.4 ? C16 VPB 601 A 1 HETATM 12 C C15 VPB . . . C 3 46.053 -14.493 23.026 1 94.54 ? C15 VPB 601 A 1 HETATM 13 O O2 VPB . . . C 3 45.616 -20.364 24.388 1 105.69 ? O2 VPB 601 A 1 HETATM 14 C C14 VPB . . . C 3 46.726 -15.579 23.478 1 93.72 ? C14 VPB 601 A 1 HETATM 15 C C13 VPB . . . C 3 47.058 -16.353 21.266 1 95.88 ? C13 VPB 601 A 1 HETATM 16 C C12 VPB . . . C 3 48.218 -15.757 20.765 1 98.14 ? C12 VPB 601 A 1 HETATM 17 C C9 VPB . . . C 3 46.119 -16.424 19.042 1 92.32 ? C9 VPB 601 A 1 HETATM 18 C C11 VPB . . . C 3 48.316 -15.492 19.402 1 97.61 ? C11 VPB 601 A 1 HETATM 19 C C10 VPB . . . C 3 47.265 -15.822 18.547 1 96.69 ? C10 VPB 601 A 1 HETATM 20 C C18 VPB . . . C 3 47.192 -15.593 24.808 1 94.44 ? C18 VPB 601 A 1 HETATM 21 C C19 VPB . . . C 3 47.885 -16.491 25.621 1 97.91 ? C19 VPB 601 A 1 HETATM 22 C C20 VPB . . . C 3 48.049 -15.866 26.901 1 95.22 ? C20 VPB 601 A 1 HETATM 23 C C21 VPB . . . C 3 48.744 -16.427 28.147 1 98.04 ? C21 VPB 601 A 1 HETATM 24 C C22 VPB . . . C 3 47.433 -14.625 26.791 1 93.19 ? C22 VPB 601 A 1 HETATM 25 N N1 VPB . . . C 3 43.725 -20.167 22.55 1 98.12 ? N1 VPB 601 A 1 HETATM 26 N N2 VPB . . . C 3 46.985 -14.563 25.591 1 95.62 ? N2 VPB 601 A 1 HETATM 27 N N3 VPB . . . C 3 49.259 -16.834 29.079 1 100.98 ? N3 VPB 601 A 1 HETATM 28 O O3 VPB . . . C 3 44.907 -17.274 20.968 1 88.57 ? O3 VPB 601 A 1 HETATM 29 O O4 VPB . . . C 3 46.903 -16.667 22.622 1 92.01 ? O4 VPB 601 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 29 #