data_8U6T # _model_server_result.job_id uNcpJkcT4_la6CU96e3wfg _model_server_result.datetime_utc '2024-11-22 06:49:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u6t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 8U6T # _exptl.entry_id 8U6T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.1 _cell.angle_gamma 90 _cell.entry_id 8U6T _cell.length_a 222.153 _cell.length_b 67.265 _cell.length_c 103.259 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8U6T _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 104 A LYS 102 1_555 C C1 VO8 . A VO8 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.488 ? metalc ? metalc1 A OD1 ASP 445 A ASP 443 1_555 G MG MG . A MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc2 A OE2 GLU 480 A GLU 478 1_555 G MG MG . A MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc3 A OD1 ASP 500 A ASP 498 1_555 G MG MG . A MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc4 A OD2 ASP 500 A ASP 498 1_555 G MG MG . A MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc5 B OE1 GLN 23 B GLN 23 1_555 H MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc6 B O THR 58 B THR 58 1_555 H MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc7 B O THR 131 B THR 131 1_555 H MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 8U6T _atom_sites.fract_transf_matrix[1][1] 0.004501 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001471 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014867 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010189 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 VO8 A 1 601 601 VO8 J58 . D 4 PO4 A 1 602 1 PO4 PO4 . E 4 PO4 A 1 603 2 PO4 PO4 . F 4 PO4 A 1 604 3 PO4 PO4 . G 5 MG A 1 605 1 MG MG . H 5 MG B 1 501 2 MG MG . I 6 HOH A 1 701 6 HOH HOH . I 6 HOH A 2 702 7 HOH HOH . I 6 HOH A 3 703 23 HOH HOH . I 6 HOH A 4 704 11 HOH HOH . I 6 HOH A 5 705 21 HOH HOH . I 6 HOH A 6 706 19 HOH HOH . I 6 HOH A 7 707 27 HOH HOH . I 6 HOH A 8 708 40 HOH HOH . I 6 HOH A 9 709 25 HOH HOH . I 6 HOH A 10 710 4 HOH HOH . I 6 HOH A 11 711 24 HOH HOH . I 6 HOH A 12 712 28 HOH HOH . I 6 HOH A 13 713 3 HOH HOH . I 6 HOH A 14 714 29 HOH HOH . I 6 HOH A 15 715 33 HOH HOH . I 6 HOH A 16 716 2 HOH HOH . I 6 HOH A 17 717 8 HOH HOH . I 6 HOH A 18 718 20 HOH HOH . I 6 HOH A 19 719 26 HOH HOH . I 6 HOH A 20 720 5 HOH HOH . J 6 HOH B 1 601 31 HOH HOH . J 6 HOH B 2 602 22 HOH HOH . J 6 HOH B 3 603 13 HOH HOH . J 6 HOH B 4 604 36 HOH HOH . J 6 HOH B 5 605 30 HOH HOH . J 6 HOH B 6 606 38 HOH HOH . J 6 HOH B 7 607 15 HOH HOH . J 6 HOH B 8 608 35 HOH HOH . J 6 HOH B 9 609 34 HOH HOH . J 6 HOH B 10 610 1 HOH HOH . J 6 HOH B 11 611 10 HOH HOH . J 6 HOH B 12 612 14 HOH HOH . J 6 HOH B 13 613 12 HOH HOH . J 6 HOH B 14 614 39 HOH HOH . J 6 HOH B 15 615 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 4 24.552 16.784 33.83 1 30 ? P PO4 602 A 1 HETATM 2 O O1 PO4 . . . D 4 24.489 17.385 32.441 1 30 ? O1 PO4 602 A 1 HETATM 3 O O2 PO4 . . . D 4 23.155 16.514 34.329 1 30 ? O2 PO4 602 A 1 HETATM 4 O O3 PO4 . . . D 4 25.33 15.486 33.785 1 30 ? O3 PO4 602 A 1 HETATM 5 O O4 PO4 . . . D 4 25.238 17.753 34.768 1 30 ? O4 PO4 602 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #