data_8U7H
#
_model_server_result.job_id            0CCKMb5jwUTywh8aZ4IrEw 
_model_server_result.datetime_utc      '2024-11-28 13:49:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8u7h 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":2601}' 
#
_entry.id    8U7H 
#
_exptl.entry_id    8U7H 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              443.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8U7H 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8U7H 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H15 N5 O11 P2' 
_chem_comp.formula_weight    443.201 
_chem_comp.id                GDP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              'rna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B GDP doub 137 n n 
PB O2B GDP sing 138 n n 
PB O3B GDP sing 139 n n 
PB O3A GDP sing 140 n n 
O2B HOB2 GDP sing 141 n n 
O3B HOB3 GDP sing 142 n n 
O3A PA GDP sing 143 n n 
PA O1A GDP doub 144 n n 
PA O2A GDP sing 145 n n 
PA O5' GDP sing 146 n n 
O2A HOA2 GDP sing 147 n n 
O5' C5' GDP sing 148 n n 
C5' C4' GDP sing 149 n n 
C5' H5' GDP sing 150 n n 
C5' "H5''" GDP sing 151 n n 
C4' O4' GDP sing 152 n n 
C4' C3' GDP sing 153 n n 
C4' H4' GDP sing 154 n n 
O4' C1' GDP sing 155 n n 
C3' O3' GDP sing 156 n n 
C3' C2' GDP sing 157 n n 
C3' H3' GDP sing 158 n n 
O3' HO3' GDP sing 159 n n 
C2' O2' GDP sing 160 n n 
C2' C1' GDP sing 161 n n 
C2' H2' GDP sing 162 n n 
O2' HO2' GDP sing 163 n n 
C1' N9 GDP sing 164 n n 
C1' H1' GDP sing 165 n n 
N9 C8 GDP sing 166 n y 
N9 C4 GDP sing 167 n y 
C8 N7 GDP doub 168 n y 
C8 H8 GDP sing 169 n n 
N7 C5 GDP sing 170 n y 
C5 C6 GDP sing 171 n n 
C5 C4 GDP doub 172 n y 
C6 O6 GDP doub 173 n n 
C6 N1 GDP sing 174 n n 
N1 C2 GDP sing 175 n n 
N1 HN1 GDP sing 176 n n 
C2 N2 GDP sing 177 n n 
C2 N3 GDP doub 178 n n 
N2 HN21 GDP sing 179 n n 
N2 HN22 GDP sing 180 n n 
N3 C4 GDP sing 181 n n 
#
_atom_sites.entry_id                     8U7H 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GDP C 1 2601 2602 GDP GDP . 
C 3 A0T C 1 2602 2603 A0T GNE . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB GDP . . . B 2 182.405 205.2 233.527 1 71.66 ? PB GDP 2601 C 1 
HETATM 2 O O1B GDP . . . B 2 183.565 204.988 232.586 1 71.66 ? O1B GDP 2601 C 1 
HETATM 3 O O2B GDP . . . B 2 181.619 203.92 233.668 1 71.66 ? O2B GDP 2601 C 1 
HETATM 4 O O3B GDP . . . B 2 181.497 206.27 232.971 1 71.66 ? O3B GDP 2601 C 1 
HETATM 5 O O3A GDP . . . B 2 182.964 205.637 234.971 1 71.66 ? O3A GDP 2601 C 1 
HETATM 6 P PA GDP . . . B 2 183.765 207.018 235.169 1 71.66 ? PA GDP 2601 C 1 
HETATM 7 O O1A GDP . . . B 2 183.203 208.104 234.287 1 71.66 ? O1A GDP 2601 C 1 
HETATM 8 O O2A GDP . . . B 2 185.234 206.815 234.895 1 71.66 ? O2A GDP 2601 C 1 
HETATM 9 O O5' GDP . . . B 2 183.519 207.37 236.717 1 71.66 ? O5' GDP 2601 C 1 
HETATM 10 C C5' GDP . . . B 2 182.816 208.547 237.106 1 71.66 ? C5' GDP 2601 C 1 
HETATM 11 C C4' GDP . . . B 2 181.959 208.21 238.32 1 71.66 ? C4' GDP 2601 C 1 
HETATM 12 O O4' GDP . . . B 2 182.714 208.283 239.531 1 71.66 ? O4' GDP 2601 C 1 
HETATM 13 C C3' GDP . . . B 2 180.783 209.148 238.518 1 71.66 ? C3' GDP 2601 C 1 
HETATM 14 O O3' GDP . . . B 2 179.611 208.608 237.905 1 71.66 ? O3' GDP 2601 C 1 
HETATM 15 C C2' GDP . . . B 2 180.607 209.214 240.023 1 71.66 ? C2' GDP 2601 C 1 
HETATM 16 O O2' GDP . . . B 2 179.395 208.561 240.408 1 71.66 ? O2' GDP 2601 C 1 
HETATM 17 C C1' GDP . . . B 2 181.805 208.484 240.614 1 71.66 ? C1' GDP 2601 C 1 
HETATM 18 N N9 GDP . . . B 2 182.4 209.332 241.675 1 71.66 ? N9 GDP 2601 C 1 
HETATM 19 C C8 GDP . . . B 2 182.572 210.666 241.619 1 71.66 ? C8 GDP 2601 C 1 
HETATM 20 N N7 GDP . . . B 2 183.141 211.134 242.759 1 71.66 ? N7 GDP 2601 C 1 
HETATM 21 C C5 GDP . . . B 2 183.339 210.082 243.573 1 71.66 ? C5 GDP 2601 C 1 
HETATM 22 C C6 GDP . . . B 2 183.898 209.871 244.929 1 71.66 ? C6 GDP 2601 C 1 
HETATM 23 O O6 GDP . . . B 2 184.338 210.829 245.601 1 71.66 ? O6 GDP 2601 C 1 
HETATM 24 N N1 GDP . . . B 2 183.924 208.623 245.411 1 71.66 ? N1 GDP 2601 C 1 
HETATM 25 C C2 GDP . . . B 2 183.459 207.571 244.71 1 71.66 ? C2 GDP 2601 C 1 
HETATM 26 N N2 GDP . . . B 2 183.52 206.34 245.271 1 71.66 ? N2 GDP 2601 C 1 
HETATM 27 N N3 GDP . . . B 2 182.933 207.692 243.463 1 71.66 ? N3 GDP 2601 C 1 
HETATM 28 C C4 GDP . . . B 2 182.848 208.898 242.855 1 71.66 ? C4 GDP 2601 C 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    43 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           28 
#