data_8U7M # _model_server_result.job_id 4P59u7hprCSW3SljaXFUUg _model_server_result.datetime_utc '2024-12-26 09:59:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u7m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"KA","auth_seq_id":604}' # _entry.id 8U7M # _exptl.entry_id 8U7M _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 348.206 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8U7M _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8U7M _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 L N N ? 4 Q N N ? 4 V N N ? 4 AA N N ? 4 FA N N ? 4 KA N N ? 4 PA N N ? 4 UA N N # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 270 n n P O2P IMP sing 271 n n P O3P IMP sing 272 n n P O5' IMP sing 273 n n O2P HOP2 IMP sing 274 n n O3P HOP3 IMP sing 275 n n O5' C5' IMP sing 276 n n C5' C4' IMP sing 277 n n C5' "H5'1" IMP sing 278 n n C5' "H5'2" IMP sing 279 n n C4' O4' IMP sing 280 n n C4' C3' IMP sing 281 n n C4' H4' IMP sing 282 n n O4' C1' IMP sing 283 n n C3' O3' IMP sing 284 n n C3' C2' IMP sing 285 n n C3' H3' IMP sing 286 n n O3' HO3' IMP sing 287 n n C2' O2' IMP sing 288 n n C2' C1' IMP sing 289 n n C2' H2' IMP sing 290 n n O2' HO2' IMP sing 291 n n C1' N9 IMP sing 292 n n C1' H1' IMP sing 293 n n N9 C8 IMP sing 294 n y N9 C4 IMP sing 295 n y C8 N7 IMP doub 296 n y C8 H8 IMP sing 297 n n N7 C5 IMP sing 298 n y C5 C6 IMP sing 299 n n C5 C4 IMP doub 300 n y C6 O6 IMP doub 301 n n C6 N1 IMP sing 302 n n N1 C2 IMP sing 303 n n N1 HN1 IMP sing 304 n n C2 N3 IMP doub 305 n n C2 H2 IMP sing 306 n n N3 C4 IMP sing 307 n n # _atom_sites.entry_id 8U7M _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 GTP A 1 601 601 GTP GTP . J 2 GTP A 1 602 602 GTP GTP . K 3 ATP A 1 603 603 ATP ATP . L 4 IMP A 1 604 604 IMP IMP . M 5 NAD A 1 605 605 NAD NAD . N 2 GTP B 1 601 601 GTP GTP . O 2 GTP B 1 602 602 GTP GTP . P 3 ATP B 1 603 603 ATP ATP . Q 4 IMP B 1 604 604 IMP IMP . R 5 NAD B 1 605 605 NAD NAD . S 2 GTP C 1 601 601 GTP GTP . T 2 GTP C 1 602 602 GTP GTP . U 3 ATP C 1 603 603 ATP ATP . V 4 IMP C 1 604 604 IMP IMP . W 5 NAD C 1 605 605 NAD NAD . X 2 GTP D 1 601 601 GTP GTP . Y 2 GTP D 1 602 602 GTP GTP . Z 3 ATP D 1 603 603 ATP ATP . AA 4 IMP D 1 604 604 IMP IMP . BA 5 NAD D 1 605 605 NAD NAD . CA 2 GTP E 1 601 601 GTP GTP . DA 2 GTP E 1 602 602 GTP GTP . EA 3 ATP E 1 603 603 ATP ATP . FA 4 IMP E 1 604 604 IMP IMP . GA 5 NAD E 1 605 605 NAD NAD . HA 2 GTP F 1 601 601 GTP GTP . IA 2 GTP F 1 602 602 GTP GTP . JA 3 ATP F 1 603 603 ATP ATP . KA 4 IMP F 1 604 604 IMP IMP . LA 5 NAD F 1 605 605 NAD NAD . MA 2 GTP G 1 601 601 GTP GTP . NA 2 GTP G 1 602 602 GTP GTP . OA 3 ATP G 1 603 603 ATP ATP . PA 4 IMP G 1 604 604 IMP IMP . QA 5 NAD G 1 605 605 NAD NAD . RA 2 GTP H 1 601 601 GTP GTP . SA 2 GTP H 1 602 602 GTP GTP . TA 3 ATP H 1 603 603 ATP ATP . UA 4 IMP H 1 604 604 IMP IMP . VA 5 NAD H 1 605 605 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . . . KA 4 241.131 252.862 249.117 1 45.34 ? P IMP 604 F 1 HETATM 2 O O1P IMP . . . KA 4 241.558 252.906 247.67 1 45.34 ? O1P IMP 604 F 1 HETATM 3 O O2P IMP . . . KA 4 240.366 251.654 249.597 1 45.34 ? O2P IMP 604 F 1 HETATM 4 O O3P IMP . . . KA 4 240.299 254.087 249.407 1 45.34 ? O3P IMP 604 F 1 HETATM 5 O O5' IMP . . . KA 4 242.462 252.939 249.986 1 45.34 ? O5' IMP 604 F 1 HETATM 6 C C5' IMP . . . KA 4 243.694 253.328 249.397 1 45.34 ? C5' IMP 604 F 1 HETATM 7 C C4' IMP . . . KA 4 244.796 253.405 250.424 1 45.34 ? C4' IMP 604 F 1 HETATM 8 O O4' IMP . . . KA 4 245.729 252.311 250.221 1 45.34 ? O4' IMP 604 F 1 HETATM 9 C C3' IMP . . . KA 4 245.672 254.645 250.362 1 45.34 ? C3' IMP 604 F 1 HETATM 10 O O3' IMP . . . KA 4 245.081 255.767 250.994 1 45.34 ? O3' IMP 604 F 1 HETATM 11 C C2' IMP . . . KA 4 246.953 254.172 251.034 1 45.34 ? C2' IMP 604 F 1 HETATM 12 O O2' IMP . . . KA 4 246.805 254.145 252.446 1 45.34 ? O2' IMP 604 F 1 HETATM 13 C C1' IMP . . . KA 4 247.042 252.733 250.526 1 45.34 ? C1' IMP 604 F 1 HETATM 14 N N9 IMP . . . KA 4 247.861 252.617 249.303 1 45.34 ? N9 IMP 604 F 1 HETATM 15 C C8 IMP . . . KA 4 247.991 253.58 248.373 1 45.34 ? C8 IMP 604 F 1 HETATM 16 N N7 IMP . . . KA 4 248.804 253.114 247.405 1 45.34 ? N7 IMP 604 F 1 HETATM 17 C C5 IMP . . . KA 4 249.167 251.88 247.734 1 45.34 ? C5 IMP 604 F 1 HETATM 18 C C6 IMP . . . KA 4 250.071 250.865 247.027 1 45.34 ? C6 IMP 604 F 1 HETATM 19 O O6 IMP . . . KA 4 250.58 251.145 245.996 1 45.34 ? O6 IMP 604 F 1 HETATM 20 N N1 IMP . . . KA 4 250.297 249.581 247.614 1 45.34 ? N1 IMP 604 F 1 HETATM 21 C C2 IMP . . . KA 4 249.669 249.252 248.867 1 45.34 ? C2 IMP 604 F 1 HETATM 22 N N3 IMP . . . KA 4 248.811 250.228 249.538 1 45.34 ? N3 IMP 604 F 1 HETATM 23 C C4 IMP . . . KA 4 248.577 251.564 248.921 1 45.34 ? C4 IMP 604 F 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 36 _model_server_stats.element_count 23 #