data_8U7Q # _model_server_result.job_id 3WXMPaFi1GY8TuiT2MCutg _model_server_result.datetime_utc '2024-10-19 08:28:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u7q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":602}' # _entry.id 8U7Q # _exptl.entry_id 8U7Q _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8U7Q _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8U7Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 O N N ? 3 T N N ? 3 Y N N ? 3 DA N N ? 3 IA N N ? 3 NA N N ? 3 SA N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 372 n n PA O2A NAD sing 373 n n PA O5B NAD sing 374 n n PA O3 NAD sing 375 n n O2A HOA2 NAD sing 376 n n O5B C5B NAD sing 377 n n C5B C4B NAD sing 378 n n C5B H51A NAD sing 379 n n C5B H52A NAD sing 380 n n C4B O4B NAD sing 381 n n C4B C3B NAD sing 382 n n C4B H4B NAD sing 383 n n O4B C1B NAD sing 384 n n C3B O3B NAD sing 385 n n C3B C2B NAD sing 386 n n C3B H3B NAD sing 387 n n O3B HO3A NAD sing 388 n n C2B O2B NAD sing 389 n n C2B C1B NAD sing 390 n n C2B H2B NAD sing 391 n n O2B HO2A NAD sing 392 n n C1B N9A NAD sing 393 n n C1B H1B NAD sing 394 n n N9A C8A NAD sing 395 n y N9A C4A NAD sing 396 n y C8A N7A NAD doub 397 n y C8A H8A NAD sing 398 n n N7A C5A NAD sing 399 n y C5A C6A NAD sing 400 n y C5A C4A NAD doub 401 n y C6A N6A NAD sing 402 n n C6A N1A NAD doub 403 n y N6A H61A NAD sing 404 n n N6A H62A NAD sing 405 n n N1A C2A NAD sing 406 n y C2A N3A NAD doub 407 n y C2A H2A NAD sing 408 n n N3A C4A NAD sing 409 n y O3 PN NAD sing 410 n n PN O1N NAD doub 411 n n PN O2N NAD sing 412 n n PN O5D NAD sing 413 n n O5D C5D NAD sing 414 n n C5D C4D NAD sing 415 n n C5D H51N NAD sing 416 n n C5D H52N NAD sing 417 n n C4D O4D NAD sing 418 n n C4D C3D NAD sing 419 n n C4D H4D NAD sing 420 n n O4D C1D NAD sing 421 n n C3D O3D NAD sing 422 n n C3D C2D NAD sing 423 n n C3D H3D NAD sing 424 n n O3D HO3N NAD sing 425 n n C2D O2D NAD sing 426 n n C2D C1D NAD sing 427 n n C2D H2D NAD sing 428 n n O2D HO2N NAD sing 429 n n C1D N1N NAD sing 430 n n C1D H1D NAD sing 431 n n N1N C2N NAD sing 432 n y N1N C6N NAD doub 433 n y C2N C3N NAD doub 434 n y C2N H2N NAD sing 435 n n C3N C7N NAD sing 436 n n C3N C4N NAD sing 437 n y C7N O7N NAD doub 438 n n C7N N7N NAD sing 439 n n N7N H71N NAD sing 440 n n N7N H72N NAD sing 441 n n C4N C5N NAD doub 442 n y C4N H4N NAD sing 443 n n C5N C6N NAD sing 444 n y C5N H5N NAD sing 445 n n C6N H6N NAD sing 446 n n # _atom_sites.entry_id 8U7Q _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 GTP A 1 601 601 GTP GTP . J 3 NAD A 1 602 602 NAD NAD . K 4 IMP A 1 603 603 IMP IMP . L 5 ATP A 1 604 604 ATP ATP . M 2 GTP A 1 605 605 GTP GTP . N 2 GTP B 1 601 601 GTP GTP . O 3 NAD B 1 602 602 NAD NAD . P 4 IMP B 1 603 603 IMP IMP . Q 5 ATP B 1 604 604 ATP ATP . R 2 GTP B 1 605 605 GTP GTP . S 2 GTP C 1 601 601 GTP GTP . T 3 NAD C 1 602 602 NAD NAD . U 4 IMP C 1 603 603 IMP IMP . V 5 ATP C 1 604 604 ATP ATP . W 2 GTP C 1 605 605 GTP GTP . X 2 GTP D 1 601 601 GTP GTP . Y 3 NAD D 1 602 602 NAD NAD . Z 4 IMP D 1 603 603 IMP IMP . AA 5 ATP D 1 604 604 ATP ATP . BA 2 GTP D 1 605 605 GTP GTP . CA 2 GTP E 1 601 601 GTP GTP . DA 3 NAD E 1 602 602 NAD NAD . EA 4 IMP E 1 603 603 IMP IMP . FA 5 ATP E 1 604 604 ATP ATP . GA 2 GTP E 1 605 605 GTP GTP . HA 2 GTP F 1 601 601 GTP GTP . IA 3 NAD F 1 602 602 NAD NAD . JA 4 IMP F 1 603 603 IMP IMP . KA 5 ATP F 1 604 604 ATP ATP . LA 2 GTP F 1 605 605 GTP GTP . MA 2 GTP G 1 601 601 GTP GTP . NA 3 NAD G 1 602 602 NAD NAD . OA 4 IMP G 1 603 603 IMP IMP . PA 5 ATP G 1 604 604 ATP ATP . QA 2 GTP G 1 605 605 GTP GTP . RA 2 GTP H 1 601 601 GTP GTP . SA 3 NAD H 1 602 602 NAD NAD . TA 4 IMP H 1 603 603 IMP IMP . UA 5 ATP H 1 604 604 ATP ATP . VA 2 GTP H 1 605 605 GTP GTP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . J 3 228.693 266.55 208.957 1 22.72 ? PA NAD 602 A 1 HETATM 2 O O1A NAD . . . J 3 229.864 266.287 208.081 1 22.72 ? O1A NAD 602 A 1 HETATM 3 O O2A NAD . . . J 3 228.494 267.927 209.492 1 22.72 ? O2A NAD 602 A 1 HETATM 4 O O5B NAD . . . J 3 227.367 266.062 208.216 1 22.72 ? O5B NAD 602 A 1 HETATM 5 C C5B NAD . . . J 3 226.14 265.983 208.966 1 22.72 ? C5B NAD 602 A 1 HETATM 6 C C4B NAD . . . J 3 225.129 266.871 208.299 1 22.72 ? C4B NAD 602 A 1 HETATM 7 O O4B NAD . . . J 3 225.685 268.2 208.177 1 22.72 ? O4B NAD 602 A 1 HETATM 8 C C3B NAD . . . J 3 224.728 266.472 206.874 1 22.72 ? C3B NAD 602 A 1 HETATM 9 O O3B NAD . . . J 3 223.332 266.236 206.86 1 22.72 ? O3B NAD 602 A 1 HETATM 10 C C2B NAD . . . J 3 225.114 267.685 206.027 1 22.72 ? C2B NAD 602 A 1 HETATM 11 O O2B NAD . . . J 3 224.207 267.988 204.995 1 22.72 ? O2B NAD 602 A 1 HETATM 12 C C1B NAD . . . J 3 225.055 268.781 207.072 1 22.72 ? C1B NAD 602 A 1 HETATM 13 N N9A NAD . . . J 3 225.738 270.008 206.696 1 22.72 ? N9A NAD 602 A 1 HETATM 14 C C8A NAD . . . J 3 227.077 270.195 206.493 1 22.72 ? C8A NAD 602 A 1 HETATM 15 N N7A NAD . . . J 3 227.378 271.419 206.146 1 22.72 ? N7A NAD 602 A 1 HETATM 16 C C5A NAD . . . J 3 226.163 272.079 206.119 1 22.72 ? C5A NAD 602 A 1 HETATM 17 C C6A NAD . . . J 3 225.813 273.406 205.816 1 22.72 ? C6A NAD 602 A 1 HETATM 18 N N6A NAD . . . J 3 226.684 274.348 205.479 1 22.72 ? N6A NAD 602 A 1 HETATM 19 N N1A NAD . . . J 3 224.506 273.733 205.881 1 22.72 ? N1A NAD 602 A 1 HETATM 20 C C2A NAD . . . J 3 223.627 272.784 206.221 1 22.72 ? C2A NAD 602 A 1 HETATM 21 N N3A NAD . . . J 3 223.838 271.509 206.521 1 22.72 ? N3A NAD 602 A 1 HETATM 22 C C4A NAD . . . J 3 225.143 271.218 206.454 1 22.72 ? C4A NAD 602 A 1 HETATM 23 O O3 NAD . . . J 3 228.724 265.507 210.159 1 22.72 ? O3 NAD 602 A 1 HETATM 24 P PN NAD . . . J 3 228.572 263.924 210.061 1 22.72 ? PN NAD 602 A 1 HETATM 25 O O1N NAD . . . J 3 228.553 263.555 208.619 1 22.72 ? O1N NAD 602 A 1 HETATM 26 O O2N NAD . . . J 3 227.429 263.502 210.918 1 22.72 ? O2N NAD 602 A 1 HETATM 27 O O5D NAD . . . J 3 229.945 263.431 210.723 1 22.72 ? O5D NAD 602 A 1 HETATM 28 C C5D NAD . . . J 3 230.353 263.946 212.021 1 22.72 ? C5D NAD 602 A 1 HETATM 29 C C4D NAD . . . J 3 231.808 263.628 212.265 1 22.72 ? C4D NAD 602 A 1 HETATM 30 O O4D NAD . . . J 3 231.928 262.248 212.658 1 22.72 ? O4D NAD 602 A 1 HETATM 31 C C3D NAD . . . J 3 232.751 263.796 211.068 1 22.72 ? C3D NAD 602 A 1 HETATM 32 O O3D NAD . . . J 3 233.214 265.139 211.05 1 22.72 ? O3D NAD 602 A 1 HETATM 33 C C2D NAD . . . J 3 233.85 262.773 211.363 1 22.72 ? C2D NAD 602 A 1 HETATM 34 O O2D NAD . . . J 3 234.817 263.21 212.303 1 22.72 ? O2D NAD 602 A 1 HETATM 35 C C1D NAD . . . J 3 233.058 261.648 212.035 1 22.72 ? C1D NAD 602 A 1 HETATM 36 N N1N NAD . . . J 3 232.605 260.585 211.108 1 22.72 ? N1N NAD 602 A 1 HETATM 37 C C2N NAD . . . J 3 233.552 259.877 210.405 1 22.72 ? C2N NAD 602 A 1 HETATM 38 C C3N NAD . . . J 3 233.165 258.861 209.541 1 22.72 ? C3N NAD 602 A 1 HETATM 39 C C7N NAD . . . J 3 234.188 258.088 208.767 1 22.72 ? C7N NAD 602 A 1 HETATM 40 O O7N NAD . . . J 3 234.026 256.87 208.587 1 22.72 ? O7N NAD 602 A 1 HETATM 41 N N7N NAD . . . J 3 235.239 258.738 208.286 1 22.72 ? N7N NAD 602 A 1 HETATM 42 C C4N NAD . . . J 3 231.823 258.549 209.404 1 22.72 ? C4N NAD 602 A 1 HETATM 43 C C5N NAD . . . J 3 230.881 259.256 210.124 1 22.72 ? C5N NAD 602 A 1 HETATM 44 C C6N NAD . . . J 3 231.273 260.263 210.974 1 22.72 ? C6N NAD 602 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #