data_8U7Q # _model_server_result.job_id S1GRtWo91cvuFwtf7bwR6w _model_server_result.datetime_utc '2024-10-19 08:34:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u7q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":604}' # _entry.id 8U7Q # _exptl.entry_id 8U7Q _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8U7Q _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8U7Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 L N N ? 5 Q N N ? 5 V N N ? 5 AA N N ? 5 FA N N ? 5 KA N N ? 5 PA N N ? 5 UA N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8U7Q _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 GTP A 1 601 601 GTP GTP . J 3 NAD A 1 602 602 NAD NAD . K 4 IMP A 1 603 603 IMP IMP . L 5 ATP A 1 604 604 ATP ATP . M 2 GTP A 1 605 605 GTP GTP . N 2 GTP B 1 601 601 GTP GTP . O 3 NAD B 1 602 602 NAD NAD . P 4 IMP B 1 603 603 IMP IMP . Q 5 ATP B 1 604 604 ATP ATP . R 2 GTP B 1 605 605 GTP GTP . S 2 GTP C 1 601 601 GTP GTP . T 3 NAD C 1 602 602 NAD NAD . U 4 IMP C 1 603 603 IMP IMP . V 5 ATP C 1 604 604 ATP ATP . W 2 GTP C 1 605 605 GTP GTP . X 2 GTP D 1 601 601 GTP GTP . Y 3 NAD D 1 602 602 NAD NAD . Z 4 IMP D 1 603 603 IMP IMP . AA 5 ATP D 1 604 604 ATP ATP . BA 2 GTP D 1 605 605 GTP GTP . CA 2 GTP E 1 601 601 GTP GTP . DA 3 NAD E 1 602 602 NAD NAD . EA 4 IMP E 1 603 603 IMP IMP . FA 5 ATP E 1 604 604 ATP ATP . GA 2 GTP E 1 605 605 GTP GTP . HA 2 GTP F 1 601 601 GTP GTP . IA 3 NAD F 1 602 602 NAD NAD . JA 4 IMP F 1 603 603 IMP IMP . KA 5 ATP F 1 604 604 ATP ATP . LA 2 GTP F 1 605 605 GTP GTP . MA 2 GTP G 1 601 601 GTP GTP . NA 3 NAD G 1 602 602 NAD NAD . OA 4 IMP G 1 603 603 IMP IMP . PA 5 ATP G 1 604 604 ATP ATP . QA 2 GTP G 1 605 605 GTP GTP . RA 2 GTP H 1 601 601 GTP GTP . SA 3 NAD H 1 602 602 NAD NAD . TA 4 IMP H 1 603 603 IMP IMP . UA 5 ATP H 1 604 604 ATP ATP . VA 2 GTP H 1 605 605 GTP GTP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . L 5 270.193 274.741 232.316 1 23.48 ? PG ATP 604 A 1 HETATM 2 O O1G ATP . . . L 5 270.24 274.692 233.803 1 23.48 ? O1G ATP 604 A 1 HETATM 3 O O2G ATP . . . L 5 268.803 274.773 231.78 1 23.48 ? O2G ATP 604 A 1 HETATM 4 O O3G ATP . . . L 5 271.038 273.689 231.678 1 23.48 ? O3G ATP 604 A 1 HETATM 5 P PB ATP . . . L 5 270.205 277.142 230.829 1 23.48 ? PB ATP 604 A 1 HETATM 6 O O1B ATP . . . L 5 268.886 277.617 231.312 1 23.48 ? O1B ATP 604 A 1 HETATM 7 O O2B ATP . . . L 5 270.305 276.469 229.517 1 23.48 ? O2B ATP 604 A 1 HETATM 8 O O3B ATP . . . L 5 270.809 276.153 231.917 1 23.48 ? O3B ATP 604 A 1 HETATM 9 P PA ATP . . . L 5 272.501 278.36 229.862 1 23.48 ? PA ATP 604 A 1 HETATM 10 O O1A ATP . . . L 5 273.239 277.107 230.139 1 23.48 ? O1A ATP 604 A 1 HETATM 11 O O2A ATP . . . L 5 272.035 278.628 228.478 1 23.48 ? O2A ATP 604 A 1 HETATM 12 O O3A ATP . . . L 5 271.248 278.341 230.835 1 23.48 ? O3A ATP 604 A 1 HETATM 13 O O5' ATP . . . L 5 273.333 279.611 230.395 1 23.48 ? O5' ATP 604 A 1 HETATM 14 C C5' ATP . . . L 5 273.525 279.76 231.817 1 23.48 ? C5' ATP 604 A 1 HETATM 15 C C4' ATP . . . L 5 274.323 281.008 232.076 1 23.48 ? C4' ATP 604 A 1 HETATM 16 O O4' ATP . . . L 5 274.805 281.548 230.821 1 23.48 ? O4' ATP 604 A 1 HETATM 17 C C3' ATP . . . L 5 273.545 282.154 232.711 1 23.48 ? C3' ATP 604 A 1 HETATM 18 O O3' ATP . . . L 5 274.419 283.024 233.404 1 23.48 ? O3' ATP 604 A 1 HETATM 19 C C2' ATP . . . L 5 273 282.871 231.486 1 23.48 ? C2' ATP 604 A 1 HETATM 20 O O2' ATP . . . L 5 272.62 284.192 231.786 1 23.48 ? O2' ATP 604 A 1 HETATM 21 C C1' ATP . . . L 5 274.233 282.815 230.595 1 23.48 ? C1' ATP 604 A 1 HETATM 22 N N9 ATP . . . L 5 273.978 282.942 229.173 1 23.48 ? N9 ATP 604 A 1 HETATM 23 C C8 ATP . . . L 5 272.987 282.356 228.453 1 23.48 ? C8 ATP 604 A 1 HETATM 24 N N7 ATP . . . L 5 273.04 282.668 227.182 1 23.48 ? N7 ATP 604 A 1 HETATM 25 C C5 ATP . . . L 5 274.141 283.5 227.068 1 23.48 ? C5 ATP 604 A 1 HETATM 26 C C6 ATP . . . L 5 274.722 284.165 225.978 1 23.48 ? C6 ATP 604 A 1 HETATM 27 N N6 ATP . . . L 5 274.261 284.099 224.735 1 23.48 ? N6 ATP 604 A 1 HETATM 28 N N1 ATP . . . L 5 275.815 284.919 226.227 1 23.48 ? N1 ATP 604 A 1 HETATM 29 C C2 ATP . . . L 5 276.273 284.994 227.48 1 23.48 ? C2 ATP 604 A 1 HETATM 30 N N3 ATP . . . L 5 275.808 284.412 228.577 1 23.48 ? N3 ATP 604 A 1 HETATM 31 C C4 ATP . . . L 5 274.727 283.673 228.296 1 23.48 ? C4 ATP 604 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #