data_8U7T # _model_server_result.job_id Pv4RqUzKvW39gXIHElHmVA _model_server_result.datetime_utc '2024-11-06 12:25:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u7t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":3302}' # _entry.id 8U7T # _exptl.entry_id 8U7T _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 X N N ? 5 Y N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OG1 THR 262 A THR 511 1_555 K MG MG . A MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc2 B OG1 THR 535 A THR 784 1_555 I MG MG . A MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc3 H O1B 08T . A 08T 1101 1_555 I MG MG . A MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc4 J O2B 08T . A 08T 1103 1_555 K MG MG . A MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc5 C OG1 THR 262 B THR 1040 1_555 O MG MG . B MG 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc6 C OG1 THR 535 B THR 1306 1_555 M MG MG . B MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc7 L O1B 08T . B 08T 1601 1_555 M MG MG . B MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc8 L O3A 08T . B 08T 1601 1_555 M MG MG . B MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc9 N O1B 08T . B 08T 1603 1_555 O MG MG . B MG 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc10 D OG1 THR 262 C THR 1595 1_555 S MG MG . C MG 2204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc11 D OG1 THR 535 C THR 1868 1_555 Q MG MG . C MG 2202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc12 P O1B 08T . C 08T 2201 1_555 Q MG MG . C MG 2202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc13 R O1B 08T . C 08T 2203 1_555 S MG MG . C MG 2204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc14 E OG1 THR 262 D THR 2153 1_555 W MG MG . D MG 2804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc15 E OG1 THR 535 D THR 2426 1_555 U MG MG . D MG 2802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc16 T O2B 08T . D 08T 2801 1_555 U MG MG . D MG 2802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc17 V O2B 08T . D 08T 2803 1_555 W MG MG . D MG 2804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 48 n n PB O2B ADP sing 49 n n PB O3B ADP sing 50 n n PB O3A ADP sing 51 n n O2B HOB2 ADP sing 52 n n O3B HOB3 ADP sing 53 n n PA O1A ADP doub 54 n n PA O2A ADP sing 55 n n PA O3A ADP sing 56 n n PA O5' ADP sing 57 n n O2A HOA2 ADP sing 58 n n O5' C5' ADP sing 59 n n C5' C4' ADP sing 60 n n C5' "H5'1" ADP sing 61 n n C5' "H5'2" ADP sing 62 n n C4' O4' ADP sing 63 n n C4' C3' ADP sing 64 n n C4' H4' ADP sing 65 n n O4' C1' ADP sing 66 n n C3' O3' ADP sing 67 n n C3' C2' ADP sing 68 n n C3' H3' ADP sing 69 n n O3' HO3' ADP sing 70 n n C2' O2' ADP sing 71 n n C2' C1' ADP sing 72 n n C2' H2' ADP sing 73 n n O2' HO2' ADP sing 74 n n C1' N9 ADP sing 75 n n C1' H1' ADP sing 76 n n N9 C8 ADP sing 77 n y N9 C4 ADP sing 78 n y C8 N7 ADP doub 79 n y C8 H8 ADP sing 80 n n N7 C5 ADP sing 81 n y C5 C6 ADP sing 82 n y C5 C4 ADP doub 83 n y C6 N6 ADP sing 84 n n C6 N1 ADP doub 85 n y N6 HN61 ADP sing 86 n n N6 HN62 ADP sing 87 n n N1 C2 ADP sing 88 n y C2 N3 ADP doub 89 n y C2 H2 ADP sing 90 n n N3 C4 ADP sing 91 n y # _atom_sites.entry_id 8U7T _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 3 08T A 1 1101 983 08T AEF . I 4 MG A 1 1102 985 MG AEF . J 3 08T A 1 1103 986 08T AEF . K 4 MG A 1 1104 988 MG AEF . L 3 08T B 1 1601 1538 08T AEF . M 4 MG B 1 1602 1540 MG AEF . N 3 08T B 1 1603 1541 08T AEF . O 4 MG B 1 1604 1543 MG AEF . P 3 08T C 1 2201 2096 08T AEF . Q 4 MG C 1 2202 2098 MG AEF . R 3 08T C 1 2203 2099 08T AEF . S 4 MG C 1 2204 2101 MG AEF . T 3 08T D 1 2801 2644 08T AEF . U 4 MG D 1 2802 2646 MG AEF . V 3 08T D 1 2803 2647 08T AEF . W 4 MG D 1 2804 2649 MG AEF . X 5 ADP E 1 3301 3187 ADP ADP . Y 5 ADP E 1 3302 3188 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . Y 5 148.499 169.051 128.005 1 126.72 ? PB ADP 3302 E 1 HETATM 2 O O1B ADP . . . Y 5 148.796 168.409 126.672 1 126.72 ? O1B ADP 3302 E 1 HETATM 3 O O2B ADP . . . Y 5 147.197 168.623 128.63 1 126.72 ? O2B ADP 3302 E 1 HETATM 4 O O3B ADP . . . Y 5 149.657 169.075 128.973 1 126.72 ? O3B ADP 3302 E 1 HETATM 5 P PA ADP . . . Y 5 146.834 171.143 127.156 1 126.72 ? PA ADP 3302 E 1 HETATM 6 O O1A ADP . . . Y 5 146.311 170.228 126.08 1 126.72 ? O1A ADP 3302 E 1 HETATM 7 O O2A ADP . . . Y 5 146.022 171.403 128.4 1 126.72 ? O2A ADP 3302 E 1 HETATM 8 O O3A ADP . . . Y 5 148.27 170.598 127.633 1 126.72 ? O3A ADP 3302 E 1 HETATM 9 O O5' ADP . . . Y 5 147.227 172.542 126.463 1 126.72 ? O5' ADP 3302 E 1 HETATM 10 C C5' ADP . . . Y 5 146.738 173.786 126.956 1 126.72 ? C5' ADP 3302 E 1 HETATM 11 C C4' ADP . . . Y 5 146.66 174.795 125.814 1 126.72 ? C4' ADP 3302 E 1 HETATM 12 O O4' ADP . . . Y 5 147.613 174.474 124.794 1 126.72 ? O4' ADP 3302 E 1 HETATM 13 C C3' ADP . . . Y 5 145.287 174.821 125.156 1 126.72 ? C3' ADP 3302 E 1 HETATM 14 O O3' ADP . . . Y 5 144.589 176.023 125.494 1 126.72 ? O3' ADP 3302 E 1 HETATM 15 C C2' ADP . . . Y 5 145.548 174.738 123.667 1 126.72 ? C2' ADP 3302 E 1 HETATM 16 O O2' ADP . . . Y 5 144.996 175.866 122.98 1 126.72 ? O2' ADP 3302 E 1 HETATM 17 C C1' ADP . . . Y 5 147.06 174.692 123.493 1 126.72 ? C1' ADP 3302 E 1 HETATM 18 N N9 ADP . . . Y 5 147.455 173.593 122.574 1 126.72 ? N9 ADP 3302 E 1 HETATM 19 C C8 ADP . . . Y 5 148.348 172.627 122.854 1 126.72 ? C8 ADP 3302 E 1 HETATM 20 N N7 ADP . . . Y 5 148.487 171.779 121.801 1 126.72 ? N7 ADP 3302 E 1 HETATM 21 C C5 ADP . . . Y 5 147.674 172.207 120.823 1 126.72 ? C5 ADP 3302 E 1 HETATM 22 C C6 ADP . . . Y 5 147.337 171.772 119.451 1 126.72 ? C6 ADP 3302 E 1 HETATM 23 N N6 ADP . . . Y 5 147.918 170.678 118.908 1 126.72 ? N6 ADP 3302 E 1 HETATM 24 N N1 ADP . . . Y 5 146.433 172.5 118.761 1 126.72 ? N1 ADP 3302 E 1 HETATM 25 C C2 ADP . . . Y 5 145.846 173.591 119.289 1 126.72 ? C2 ADP 3302 E 1 HETATM 26 N N3 ADP . . . Y 5 146.11 174.038 120.53 1 126.72 ? N3 ADP 3302 E 1 HETATM 27 C C4 ADP . . . Y 5 147.002 173.408 121.331 1 126.72 ? C4 ADP 3302 E 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 57 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #