data_8U7V
#
_model_server_result.job_id            Zg3-xrtCEUQMsHQqQGbM-Q 
_model_server_result.datetime_utc      '2024-12-26 12:47:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8u7v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"DA","auth_seq_id":602}' 
#
_entry.id    8U7V 
#
_exptl.entry_id    8U7V 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8U7V 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8U7V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 O N N 
? 3 T N N 
? 3 Y N N 
? 3 DA N N 
? 3 IA N N 
? 3 NA N N 
? 3 SA N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 372 n n 
PA O2A NAD sing 373 n n 
PA O5B NAD sing 374 n n 
PA O3 NAD sing 375 n n 
O2A HOA2 NAD sing 376 n n 
O5B C5B NAD sing 377 n n 
C5B C4B NAD sing 378 n n 
C5B H51A NAD sing 379 n n 
C5B H52A NAD sing 380 n n 
C4B O4B NAD sing 381 n n 
C4B C3B NAD sing 382 n n 
C4B H4B NAD sing 383 n n 
O4B C1B NAD sing 384 n n 
C3B O3B NAD sing 385 n n 
C3B C2B NAD sing 386 n n 
C3B H3B NAD sing 387 n n 
O3B HO3A NAD sing 388 n n 
C2B O2B NAD sing 389 n n 
C2B C1B NAD sing 390 n n 
C2B H2B NAD sing 391 n n 
O2B HO2A NAD sing 392 n n 
C1B N9A NAD sing 393 n n 
C1B H1B NAD sing 394 n n 
N9A C8A NAD sing 395 n y 
N9A C4A NAD sing 396 n y 
C8A N7A NAD doub 397 n y 
C8A H8A NAD sing 398 n n 
N7A C5A NAD sing 399 n y 
C5A C6A NAD sing 400 n y 
C5A C4A NAD doub 401 n y 
C6A N6A NAD sing 402 n n 
C6A N1A NAD doub 403 n y 
N6A H61A NAD sing 404 n n 
N6A H62A NAD sing 405 n n 
N1A C2A NAD sing 406 n y 
C2A N3A NAD doub 407 n y 
C2A H2A NAD sing 408 n n 
N3A C4A NAD sing 409 n y 
O3 PN NAD sing 410 n n 
PN O1N NAD doub 411 n n 
PN O2N NAD sing 412 n n 
PN O5D NAD sing 413 n n 
O5D C5D NAD sing 414 n n 
C5D C4D NAD sing 415 n n 
C5D H51N NAD sing 416 n n 
C5D H52N NAD sing 417 n n 
C4D O4D NAD sing 418 n n 
C4D C3D NAD sing 419 n n 
C4D H4D NAD sing 420 n n 
O4D C1D NAD sing 421 n n 
C3D O3D NAD sing 422 n n 
C3D C2D NAD sing 423 n n 
C3D H3D NAD sing 424 n n 
O3D HO3N NAD sing 425 n n 
C2D O2D NAD sing 426 n n 
C2D C1D NAD sing 427 n n 
C2D H2D NAD sing 428 n n 
O2D HO2N NAD sing 429 n n 
C1D N1N NAD sing 430 n n 
C1D H1D NAD sing 431 n n 
N1N C2N NAD sing 432 n y 
N1N C6N NAD doub 433 n y 
C2N C3N NAD doub 434 n y 
C2N H2N NAD sing 435 n n 
C3N C7N NAD sing 436 n n 
C3N C4N NAD sing 437 n y 
C7N O7N NAD doub 438 n n 
C7N N7N NAD sing 439 n n 
N7N H71N NAD sing 440 n n 
N7N H72N NAD sing 441 n n 
C4N C5N NAD doub 442 n y 
C4N H4N NAD sing 443 n n 
C5N C6N NAD sing 444 n y 
C5N H5N NAD sing 445 n n 
C6N H6N NAD sing 446 n n 
#
_atom_sites.entry_id                     8U7V 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 GTP A 1 601 601 GTP GTP . 
J 3 NAD A 1 602 602 NAD NAD . 
K 4 IMP A 1 603 603 IMP IMP . 
L 5 ATP A 1 604 604 ATP ATP . 
M 2 GTP A 1 605 605 GTP GTP . 
N 2 GTP B 1 601 601 GTP GTP . 
O 3 NAD B 1 602 602 NAD NAD . 
P 4 IMP B 1 603 603 IMP IMP . 
Q 5 ATP B 1 604 604 ATP ATP . 
R 2 GTP B 1 605 605 GTP GTP . 
S 2 GTP C 1 601 601 GTP GTP . 
T 3 NAD C 1 602 602 NAD NAD . 
U 4 IMP C 1 603 603 IMP IMP . 
V 5 ATP C 1 604 604 ATP ATP . 
W 2 GTP C 1 605 605 GTP GTP . 
X 2 GTP D 1 601 601 GTP GTP . 
Y 3 NAD D 1 602 602 NAD NAD . 
Z 4 IMP D 1 603 603 IMP IMP . 
AA 5 ATP D 1 604 604 ATP ATP . 
BA 2 GTP D 1 605 605 GTP GTP . 
CA 2 GTP E 1 601 601 GTP GTP . 
DA 3 NAD E 1 602 602 NAD NAD . 
EA 4 IMP E 1 603 603 IMP IMP . 
FA 5 ATP E 1 604 604 ATP ATP . 
GA 2 GTP E 1 605 605 GTP GTP . 
HA 2 GTP F 1 601 601 GTP GTP . 
IA 3 NAD F 1 602 602 NAD NAD . 
JA 4 IMP F 1 603 603 IMP IMP . 
KA 5 ATP F 1 604 604 ATP ATP . 
LA 2 GTP F 1 605 605 GTP GTP . 
MA 2 GTP G 1 601 601 GTP GTP . 
NA 3 NAD G 1 602 602 NAD NAD . 
OA 4 IMP G 1 603 603 IMP IMP . 
PA 5 ATP G 1 604 604 ATP ATP . 
QA 2 GTP G 1 605 605 GTP GTP . 
RA 2 GTP H 1 601 601 GTP GTP . 
SA 3 NAD H 1 602 602 NAD NAD . 
TA 4 IMP H 1 603 603 IMP IMP . 
UA 5 ATP H 1 604 604 ATP ATP . 
VA 2 GTP H 1 605 605 GTP GTP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . DA 3 208.691 206.104 205.555 1 29.67 ? PA NAD 602 E 1 
HETATM 2 O O1A NAD . . . DA 3 209.032 204.674 205.288 1 29.67 ? O1A NAD 602 E 1 
HETATM 3 O O2A NAD . . . DA 3 207.652 206.741 204.698 1 29.67 ? O2A NAD 602 E 1 
HETATM 4 O O5B NAD . . . DA 3 208.292 206.271 207.095 1 29.67 ? O5B NAD 602 E 1 
HETATM 5 C C5B NAD . . . DA 3 208.015 207.586 207.632 1 29.67 ? C5B NAD 602 E 1 
HETATM 6 C C4B NAD . . . DA 3 206.597 207.979 207.307 1 29.67 ? C4B NAD 602 E 1 
HETATM 7 O O4B NAD . . . DA 3 205.792 206.786 207.142 1 29.67 ? O4B NAD 602 E 1 
HETATM 8 C C3B NAD . . . DA 3 205.883 208.8 208.384 1 29.67 ? C3B NAD 602 E 1 
HETATM 9 O O3B NAD . . . DA 3 204.972 209.718 207.8 1 29.67 ? O3B NAD 602 E 1 
HETATM 10 C C2B NAD . . . DA 3 205.177 207.712 209.19 1 29.67 ? C2B NAD 602 E 1 
HETATM 11 O O2B NAD . . . DA 3 204.065 208.171 209.922 1 29.67 ? O2B NAD 602 E 1 
HETATM 12 C C1B NAD . . . DA 3 204.727 206.802 208.06 1 29.67 ? C1B NAD 602 E 1 
HETATM 13 N N9A NAD . . . DA 3 204.452 205.438 208.479 1 29.67 ? N9A NAD 602 E 1 
HETATM 14 C C8A NAD . . . DA 3 205.359 204.442 208.73 1 29.67 ? C8A NAD 602 E 1 
HETATM 15 N N7A NAD . . . DA 3 204.801 203.313 209.085 1 29.67 ? N7A NAD 602 E 1 
HETATM 16 C C5A NAD . . . DA 3 203.443 203.581 209.063 1 29.67 ? C5A NAD 602 E 1 
HETATM 17 C C6A NAD . . . DA 3 202.319 202.789 209.343 1 29.67 ? C6A NAD 602 E 1 
HETATM 18 N N6A NAD . . . DA 3 202.388 201.517 209.714 1 29.67 ? N6A NAD 602 E 1 
HETATM 19 N N1A NAD . . . DA 3 201.103 203.366 209.225 1 29.67 ? N1A NAD 602 E 1 
HETATM 20 C C2A NAD . . . DA 3 201.039 204.65 208.854 1 29.67 ? C2A NAD 602 E 1 
HETATM 21 N N3A NAD . . . DA 3 202.024 205.491 208.569 1 29.67 ? N3A NAD 602 E 1 
HETATM 22 C C4A NAD . . . DA 3 203.215 204.888 208.691 1 29.67 ? C4A NAD 602 E 1 
HETATM 23 O O3 NAD . . . DA 3 210.035 206.964 205.503 1 29.67 ? O3 NAD 602 E 1 
HETATM 24 P PN NAD . . . DA 3 210.377 208.331 204.758 1 29.67 ? PN NAD 602 E 1 
HETATM 25 O O1N NAD . . . DA 3 210.44 209.406 205.785 1 29.67 ? O1N NAD 602 E 1 
HETATM 26 O O2N NAD . . . DA 3 209.447 208.514 203.607 1 29.67 ? O2N NAD 602 E 1 
HETATM 27 O O5D NAD . . . DA 3 211.849 208.023 204.206 1 29.67 ? O5D NAD 602 E 1 
HETATM 28 C C5D NAD . . . DA 3 211.992 207.036 203.153 1 29.67 ? C5D NAD 602 E 1 
HETATM 29 C C4D NAD . . . DA 3 213.416 207.016 202.66 1 29.67 ? C4D NAD 602 E 1 
HETATM 30 O O4D NAD . . . DA 3 213.991 208.337 202.761 1 29.67 ? O4D NAD 602 E 1 
HETATM 31 C C3D NAD . . . DA 3 214.376 206.112 203.44 1 29.67 ? C3D NAD 602 E 1 
HETATM 32 O O3D NAD . . . DA 3 215.44 205.658 202.617 1 29.67 ? O3D NAD 602 E 1 
HETATM 33 C C2D NAD . . . DA 3 214.903 207.07 204.503 1 29.67 ? C2D NAD 602 E 1 
HETATM 34 O O2D NAD . . . DA 3 216.105 206.614 205.1 1 29.67 ? O2D NAD 602 E 1 
HETATM 35 C C1D NAD . . . DA 3 215.131 208.288 203.608 1 29.67 ? C1D NAD 602 E 1 
HETATM 36 N N1N NAD . . . DA 3 215.253 209.534 204.38 1 29.67 ? N1N NAD 602 E 1 
HETATM 37 C C2N NAD . . . DA 3 216.34 209.683 205.21 1 29.67 ? C2N NAD 602 E 1 
HETATM 38 C C3N NAD . . . DA 3 216.471 210.838 205.964 1 29.67 ? C3N NAD 602 E 1 
HETATM 39 C C7N NAD . . . DA 3 217.627 211.037 206.883 1 29.67 ? C7N NAD 602 E 1 
HETATM 40 O O7N NAD . . . DA 3 217.45 210.92 208.102 1 29.67 ? O7N NAD 602 E 1 
HETATM 41 N N7N NAD . . . DA 3 218.8 211.354 206.358 1 29.67 ? N7N NAD 602 E 1 
HETATM 42 C C4N NAD . . . DA 3 215.503 211.82 205.904 1 29.67 ? C4N NAD 602 E 1 
HETATM 43 C C5N NAD . . . DA 3 214.418 211.659 205.068 1 29.67 ? C5N NAD 602 E 1 
HETATM 44 C C6N NAD . . . DA 3 214.292 210.516 204.316 1 29.67 ? C6N NAD 602 E 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    68 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           44 
#