data_8U86 # _model_server_result.job_id j5je0tdiUsNL4RHtB7xKUA _model_server_result.datetime_utc '2024-11-05 00:02:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u86 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":803}' # _entry.id 8U86 # _exptl.entry_id 8U86 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 745.421 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8U86 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8U86 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 268 A HIS 268 1_555 D FE HEB . A HEB 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc2 A NE2 HIS 356 A HIS 356 1_555 D FE HEB . A HEB 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc3 A NE2 HIS 369 A HIS 369 1_555 C FE HEB . A HEB 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc4 A SG CYS 568 A CYS 568 1_555 I ZN ZN . A ZN 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc5 A SG CYS 571 A CYS 571 1_555 I ZN ZN . A ZN 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc6 I ZN ZN . A ZN 807 1_555 B SG CYS 568 C CYS 568 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc7 I ZN ZN . A ZN 807 1_555 B SG CYS 571 C CYS 571 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc8 B NE2 HIS 268 C HIS 268 1_555 K FE HEB . C HEB 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc9 B NE2 HIS 356 C HIS 356 1_555 K FE HEB . C HEB 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc10 B NE2 HIS 369 C HIS 369 1_555 J FE HEB . C HEB 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 478 n n PA O2A NDP sing 479 n n PA O5B NDP sing 480 n n PA O3 NDP sing 481 n n O2A HOA2 NDP sing 482 n n O5B C5B NDP sing 483 n n C5B C4B NDP sing 484 n n C5B H51A NDP sing 485 n n C5B H52A NDP sing 486 n n C4B O4B NDP sing 487 n n C4B C3B NDP sing 488 n n C4B H4B NDP sing 489 n n O4B C1B NDP sing 490 n n C3B O3B NDP sing 491 n n C3B C2B NDP sing 492 n n C3B H3B NDP sing 493 n n O3B HO3A NDP sing 494 n n C2B O2B NDP sing 495 n n C2B C1B NDP sing 496 n n C2B H2B NDP sing 497 n n O2B P2B NDP sing 498 n n C1B N9A NDP sing 499 n n C1B H1B NDP sing 500 n n N9A C8A NDP sing 501 n y N9A C4A NDP sing 502 n y C8A N7A NDP doub 503 n y C8A H8A NDP sing 504 n n N7A C5A NDP sing 505 n y C5A C6A NDP sing 506 n y C5A C4A NDP doub 507 n y C6A N6A NDP sing 508 n n C6A N1A NDP doub 509 n y N6A H61A NDP sing 510 n n N6A H62A NDP sing 511 n n N1A C2A NDP sing 512 n y C2A N3A NDP doub 513 n y C2A H2A NDP sing 514 n n N3A C4A NDP sing 515 n y O3 PN NDP sing 516 n n PN O1N NDP doub 517 n n PN O2N NDP sing 518 n n PN O5D NDP sing 519 n n O2N H21N NDP sing 520 n n O5D C5D NDP sing 521 n n C5D C4D NDP sing 522 n n C5D H51N NDP sing 523 n n C5D H52N NDP sing 524 n n C4D O4D NDP sing 525 n n C4D C3D NDP sing 526 n n C4D H4D NDP sing 527 n n O4D C1D NDP sing 528 n n C3D O3D NDP sing 529 n n C3D C2D NDP sing 530 n n C3D H3D NDP sing 531 n n O3D HO3N NDP sing 532 n n C2D O2D NDP sing 533 n n C2D C1D NDP sing 534 n n C2D H2D NDP sing 535 n n O2D HO2N NDP sing 536 n n C1D N1N NDP sing 537 n n C1D H1D NDP sing 538 n n N1N C2N NDP sing 539 n n N1N C6N NDP sing 540 n n C2N C3N NDP doub 541 n n C2N H2N NDP sing 542 n n C3N C7N NDP sing 543 n n C3N C4N NDP sing 544 n n C7N O7N NDP doub 545 n n C7N N7N NDP sing 546 n n N7N H71N NDP sing 547 n n N7N H72N NDP sing 548 n n C4N C5N NDP sing 549 n n C4N H41N NDP sing 550 n n C4N H42N NDP sing 551 n n C5N C6N NDP doub 552 n n C5N H5N NDP sing 553 n n C6N H6N NDP sing 554 n n P2B O1X NDP doub 555 n n P2B O2X NDP sing 556 n n P2B O3X NDP sing 557 n n O2X HOP2 NDP sing 558 n n O3X HOP3 NDP sing 559 n n # _atom_sites.entry_id 8U86 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEB A 1 801 801 HEB HEB . D 2 HEB A 1 802 851 HEB HEB . E 3 NDP A 1 803 901 NDP NDP . F 4 FAD A 1 804 951 FAD FAD . G 5 D12 A 1 805 1001 D12 D12 . H 6 D10 A 1 806 1101 D10 D10 . I 7 ZN A 1 807 1 ZN ZN . J 2 HEB C 1 801 801 HEB HEB . K 2 HEB C 1 802 851 HEB HEB . L 3 NDP C 1 803 901 NDP NDP . M 4 FAD C 1 804 951 FAD FAD . N 5 D12 C 1 805 1001 D12 D12 . O 6 D10 C 1 806 1101 D10 D10 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . E 3 101.409 130.766 150.429 1 50.77 ? PA NDP 803 A 1 HETATM 2 O O1A NDP . . . E 3 100.612 132.009 150.246 1 50.77 ? O1A NDP 803 A 1 HETATM 3 O O2A NDP . . . E 3 102.89 130.805 150.663 1 50.77 ? O2A NDP 803 A 1 HETATM 4 O O5B NDP . . . E 3 100.705 129.833 151.568 1 50.77 ? O5B NDP 803 A 1 HETATM 5 C C5B NDP . . . E 3 101.582 129.893 152.63 1 50.77 ? C5B NDP 803 A 1 HETATM 6 C C4B NDP . . . E 3 100.782 130.148 153.859 1 50.77 ? C4B NDP 803 A 1 HETATM 7 O O4B NDP . . . E 3 100.495 131.523 153.935 1 50.77 ? O4B NDP 803 A 1 HETATM 8 C C3B NDP . . . E 3 99.484 129.351 153.696 1 50.77 ? C3B NDP 803 A 1 HETATM 9 O O3B NDP . . . E 3 99.288 128.545 154.8 1 50.77 ? O3B NDP 803 A 1 HETATM 10 C C2B NDP . . . E 3 98.403 130.443 153.694 1 50.77 ? C2B NDP 803 A 1 HETATM 11 O O2B NDP . . . E 3 97.329 130.126 154.4 1 50.77 ? O2B NDP 803 A 1 HETATM 12 C C1B NDP . . . E 3 99.169 131.625 154.378 1 50.77 ? C1B NDP 803 A 1 HETATM 13 N N9A NDP . . . E 3 98.65 132.915 153.922 1 50.77 ? N9A NDP 803 A 1 HETATM 14 C C8A NDP . . . E 3 98.225 133.266 152.634 1 50.77 ? C8A NDP 803 A 1 HETATM 15 N N7A NDP . . . E 3 97.795 134.538 152.542 1 50.77 ? N7A NDP 803 A 1 HETATM 16 C C5A NDP . . . E 3 97.951 135.035 153.844 1 50.77 ? C5A NDP 803 A 1 HETATM 17 C C6A NDP . . . E 3 97.682 136.292 154.407 1 50.77 ? C6A NDP 803 A 1 HETATM 18 N N6A NDP . . . E 3 97.171 137.306 153.628 1 50.77 ? N6A NDP 803 A 1 HETATM 19 N N1A NDP . . . E 3 97.919 136.55 155.723 1 50.77 ? N1A NDP 803 A 1 HETATM 20 C C2A NDP . . . E 3 98.428 135.491 156.427 1 50.77 ? C2A NDP 803 A 1 HETATM 21 N N3A NDP . . . E 3 98.734 134.245 156.04 1 50.77 ? N3A NDP 803 A 1 HETATM 22 C C4A NDP . . . E 3 98.483 134.036 154.713 1 50.77 ? C4A NDP 803 A 1 HETATM 23 O O3 NDP . . . E 3 101.194 130.058 148.978 1 50.77 ? O3 NDP 803 A 1 HETATM 24 P PN NDP . . . E 3 101.296 128.499 149.209 1 50.77 ? PN NDP 803 A 1 HETATM 25 O O1N NDP . . . E 3 99.945 127.989 149.514 1 50.77 ? O1N NDP 803 A 1 HETATM 26 O O2N NDP . . . E 3 102.542 128.076 149.955 1 50.77 ? O2N NDP 803 A 1 HETATM 27 O O5D NDP . . . E 3 101.59 127.752 147.654 1 50.77 ? O5D NDP 803 A 1 HETATM 28 C C5D NDP . . . E 3 102.936 127.886 147.454 1 50.77 ? C5D NDP 803 A 1 HETATM 29 C C4D NDP . . . E 3 103.164 129.048 146.524 1 50.77 ? C4D NDP 803 A 1 HETATM 30 O O4D NDP . . . E 3 104.5 129.508 146.635 1 50.77 ? O4D NDP 803 A 1 HETATM 31 C C3D NDP . . . E 3 103.042 128.53 145.069 1 50.77 ? C3D NDP 803 A 1 HETATM 32 O O3D NDP . . . E 3 101.829 128.961 144.558 1 50.77 ? O3D NDP 803 A 1 HETATM 33 C C2D NDP . . . E 3 104.22 129.216 144.356 1 50.77 ? C2D NDP 803 A 1 HETATM 34 O O2D NDP . . . E 3 103.817 129.963 143.259 1 50.77 ? O2D NDP 803 A 1 HETATM 35 C C1D NDP . . . E 3 104.717 130.199 145.445 1 50.77 ? C1D NDP 803 A 1 HETATM 36 N N1N NDP . . . E 3 106.15 130.448 145.285 1 50.77 ? N1N NDP 803 A 1 HETATM 37 C C2N NDP . . . E 3 106.607 131.037 144.132 1 50.77 ? C2N NDP 803 A 1 HETATM 38 C C3N NDP . . . E 3 107.83 131.622 144.107 1 50.77 ? C3N NDP 803 A 1 HETATM 39 C C7N NDP . . . E 3 108.23 132.222 142.847 1 50.77 ? C7N NDP 803 A 1 HETATM 40 O O7N NDP . . . E 3 107.497 132.332 141.857 1 50.77 ? O7N NDP 803 A 1 HETATM 41 N N7N NDP . . . E 3 109.524 132.701 142.77 1 50.77 ? N7N NDP 803 A 1 HETATM 42 C C4N NDP . . . E 3 108.711 131.654 145.305 1 50.77 ? C4N NDP 803 A 1 HETATM 43 C C5N NDP . . . E 3 108.28 130.663 146.326 1 50.77 ? C5N NDP 803 A 1 HETATM 44 C C6N NDP . . . E 3 107.064 130.107 146.295 1 50.77 ? C6N NDP 803 A 1 HETATM 45 P P2B NDP . . . E 3 95.953 129.667 153.298 1 50.77 ? P2B NDP 803 A 1 HETATM 46 O O1X NDP . . . E 3 95.096 129.034 154.349 1 50.77 ? O1X NDP 803 A 1 HETATM 47 O O2X NDP . . . E 3 95.492 131.008 152.721 1 50.77 ? O2X NDP 803 A 1 HETATM 48 O O3X NDP . . . E 3 96.724 128.754 152.389 1 50.77 ? O3X NDP 803 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 48 #