data_8U86 # _model_server_result.job_id CBn8hqNndbgKkzXphUcu_Q _model_server_result.datetime_utc '2024-11-05 00:00:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u86 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":804}' # _entry.id 8U86 # _exptl.entry_id 8U86 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 785.55 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8U86 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8U86 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 268 A HIS 268 1_555 D FE HEB . A HEB 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc2 A NE2 HIS 356 A HIS 356 1_555 D FE HEB . A HEB 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc3 A NE2 HIS 369 A HIS 369 1_555 C FE HEB . A HEB 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc4 A SG CYS 568 A CYS 568 1_555 I ZN ZN . A ZN 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc5 A SG CYS 571 A CYS 571 1_555 I ZN ZN . A ZN 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc6 I ZN ZN . A ZN 807 1_555 B SG CYS 568 C CYS 568 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc7 I ZN ZN . A ZN 807 1_555 B SG CYS 571 C CYS 571 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc8 B NE2 HIS 268 C HIS 268 1_555 K FE HEB . C HEB 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc9 B NE2 HIS 356 C HIS 356 1_555 K FE HEB . C HEB 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc10 B NE2 HIS 369 C HIS 369 1_555 J FE HEB . C HEB 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 151 n n PA O2A FAD sing 152 n n PA O5B FAD sing 153 n n PA O3P FAD sing 154 n n O2A HOA2 FAD sing 155 n n O5B C5B FAD sing 156 n n C5B C4B FAD sing 157 n n C5B H51A FAD sing 158 n n C5B H52A FAD sing 159 n n C4B O4B FAD sing 160 n n C4B C3B FAD sing 161 n n C4B H4B FAD sing 162 n n O4B C1B FAD sing 163 n n C3B O3B FAD sing 164 n n C3B C2B FAD sing 165 n n C3B H3B FAD sing 166 n n O3B HO3A FAD sing 167 n n C2B O2B FAD sing 168 n n C2B C1B FAD sing 169 n n C2B H2B FAD sing 170 n n O2B HO2A FAD sing 171 n n C1B N9A FAD sing 172 n n C1B H1B FAD sing 173 n n N9A C8A FAD sing 174 n y N9A C4A FAD sing 175 n y C8A N7A FAD doub 176 n y C8A H8A FAD sing 177 n n N7A C5A FAD sing 178 n y C5A C6A FAD sing 179 n y C5A C4A FAD doub 180 n y C6A N6A FAD sing 181 n n C6A N1A FAD doub 182 n y N6A H61A FAD sing 183 n n N6A H62A FAD sing 184 n n N1A C2A FAD sing 185 n y C2A N3A FAD doub 186 n y C2A H2A FAD sing 187 n n N3A C4A FAD sing 188 n y N1 C2 FAD sing 189 n n N1 C10 FAD doub 190 n n C2 O2 FAD doub 191 n n C2 N3 FAD sing 192 n n N3 C4 FAD sing 193 n n N3 HN3 FAD sing 194 n n C4 O4 FAD doub 195 n n C4 C4X FAD sing 196 n n C4X N5 FAD doub 197 n n C4X C10 FAD sing 198 n n N5 C5X FAD sing 199 n n C5X C6 FAD doub 200 n y C5X C9A FAD sing 201 n y C6 C7 FAD sing 202 n y C6 H6 FAD sing 203 n n C7 C7M FAD sing 204 n n C7 C8 FAD doub 205 n y C7M HM71 FAD sing 206 n n C7M HM72 FAD sing 207 n n C7M HM73 FAD sing 208 n n C8 C8M FAD sing 209 n n C8 C9 FAD sing 210 n y C8M HM81 FAD sing 211 n n C8M HM82 FAD sing 212 n n C8M HM83 FAD sing 213 n n C9 C9A FAD doub 214 n y C9 H9 FAD sing 215 n n C9A N10 FAD sing 216 n n N10 C10 FAD sing 217 n n N10 C1' FAD sing 218 n n C1' C2' FAD sing 219 n n C1' "H1'1" FAD sing 220 n n C1' "H1'2" FAD sing 221 n n C2' O2' FAD sing 222 n n C2' C3' FAD sing 223 n n C2' H2' FAD sing 224 n n O2' HO2' FAD sing 225 n n C3' O3' FAD sing 226 n n C3' C4' FAD sing 227 n n C3' H3' FAD sing 228 n n O3' HO3' FAD sing 229 n n C4' O4' FAD sing 230 n n C4' C5' FAD sing 231 n n C4' H4' FAD sing 232 n n O4' HO4' FAD sing 233 n n C5' O5' FAD sing 234 n n C5' "H5'1" FAD sing 235 n n C5' "H5'2" FAD sing 236 n n O5' P FAD sing 237 n n P O1P FAD doub 238 n n P O2P FAD sing 239 n n P O3P FAD sing 240 n n O2P HOP2 FAD sing 241 n n # _atom_sites.entry_id 8U86 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEB A 1 801 801 HEB HEB . D 2 HEB A 1 802 851 HEB HEB . E 3 NDP A 1 803 901 NDP NDP . F 4 FAD A 1 804 951 FAD FAD . G 5 D12 A 1 805 1001 D12 D12 . H 6 D10 A 1 806 1101 D10 D10 . I 7 ZN A 1 807 1 ZN ZN . J 2 HEB C 1 801 801 HEB HEB . K 2 HEB C 1 802 851 HEB HEB . L 3 NDP C 1 803 901 NDP NDP . M 4 FAD C 1 804 951 FAD FAD . N 5 D12 C 1 805 1001 D12 D12 . O 6 D10 C 1 806 1101 D10 D10 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . M 4 153.905 150.296 141.676 1 2.07 ? PA FAD 804 C 1 HETATM 2 O O1A FAD . . . M 4 154.883 151.368 141.923 1 2.07 ? O1A FAD 804 C 1 HETATM 3 O O2A FAD . . . M 4 152.766 150.654 140.736 1 2.07 ? O2A FAD 804 C 1 HETATM 4 O O5B FAD . . . M 4 154.64 149.029 141.171 1 2.07 ? O5B FAD 804 C 1 HETATM 5 C C5B FAD . . . M 4 155.71 148.435 141.932 1 2.07 ? C5B FAD 804 C 1 HETATM 6 C C4B FAD . . . M 4 155.415 146.97 142.138 1 2.07 ? C4B FAD 804 C 1 HETATM 7 O O4B FAD . . . M 4 154.039 146.803 142.544 1 2.07 ? O4B FAD 804 C 1 HETATM 8 C C3B FAD . . . M 4 155.605 146.091 140.907 1 2.07 ? C3B FAD 804 C 1 HETATM 9 O O3B FAD . . . M 4 156.151 144.826 141.259 1 2.07 ? O3B FAD 804 C 1 HETATM 10 C C2B FAD . . . M 4 154.185 145.965 140.354 1 2.07 ? C2B FAD 804 C 1 HETATM 11 O O2B FAD . . . M 4 154.001 144.747 139.643 1 2.07 ? O2B FAD 804 C 1 HETATM 12 C C1B FAD . . . M 4 153.363 145.958 141.638 1 2.07 ? C1B FAD 804 C 1 HETATM 13 N N9A FAD . . . M 4 152.003 146.454 141.469 1 2.07 ? N9A FAD 804 C 1 HETATM 14 C C8A FAD . . . M 4 151.618 147.616 140.852 1 2.07 ? C8A FAD 804 C 1 HETATM 15 N N7A FAD . . . M 4 150.322 147.811 140.837 1 2.07 ? N7A FAD 804 C 1 HETATM 16 C C5A FAD . . . M 4 149.818 146.697 141.489 1 2.07 ? C5A FAD 804 C 1 HETATM 17 C C6A FAD . . . M 4 148.507 146.296 141.8 1 2.07 ? C6A FAD 804 C 1 HETATM 18 N N6A FAD . . . M 4 147.419 147.001 141.484 1 2.07 ? N6A FAD 804 C 1 HETATM 19 N N1A FAD . . . M 4 148.349 145.125 142.451 1 2.07 ? N1A FAD 804 C 1 HETATM 20 C C2A FAD . . . M 4 149.432 144.413 142.767 1 2.07 ? C2A FAD 804 C 1 HETATM 21 N N3A FAD . . . M 4 150.714 144.689 142.526 1 2.07 ? N3A FAD 804 C 1 HETATM 22 C C4A FAD . . . M 4 150.841 145.853 141.88 1 2.07 ? C4A FAD 804 C 1 HETATM 23 N N1 FAD . . . M 4 152.113 146.149 149.875 1 2.07 ? N1 FAD 804 C 1 HETATM 24 C C2 FAD . . . M 4 152.218 146.872 151.024 1 2.07 ? C2 FAD 804 C 1 HETATM 25 O O2 FAD . . . M 4 153.06 147.764 151.147 1 2.07 ? O2 FAD 804 C 1 HETATM 26 N N3 FAD . . . M 4 151.38 146.605 152.079 1 2.07 ? N3 FAD 804 C 1 HETATM 27 C C4 FAD . . . M 4 150.403 145.661 152.107 1 2.07 ? C4 FAD 804 C 1 HETATM 28 O O4 FAD . . . M 4 149.713 145.521 153.113 1 2.07 ? O4 FAD 804 C 1 HETATM 29 C C4X FAD . . . M 4 150.286 144.899 150.882 1 2.07 ? C4X FAD 804 C 1 HETATM 30 N N5 FAD . . . M 4 149.378 143.981 150.827 1 2.07 ? N5 FAD 804 C 1 HETATM 31 C C5X FAD . . . M 4 149.257 143.251 149.663 1 2.07 ? C5X FAD 804 C 1 HETATM 32 C C6 FAD . . . M 4 148.282 142.261 149.594 1 2.07 ? C6 FAD 804 C 1 HETATM 33 C C7 FAD . . . M 4 148.117 141.496 148.444 1 2.07 ? C7 FAD 804 C 1 HETATM 34 C C7M FAD . . . M 4 147.05 140.435 148.404 1 2.07 ? C7M FAD 804 C 1 HETATM 35 C C8 FAD . . . M 4 148.946 141.725 147.339 1 2.07 ? C8 FAD 804 C 1 HETATM 36 C C8M FAD . . . M 4 148.793 140.915 146.081 1 2.07 ? C8M FAD 804 C 1 HETATM 37 C C9 FAD . . . M 4 149.922 142.712 147.406 1 2.07 ? C9 FAD 804 C 1 HETATM 38 C C9A FAD . . . M 4 150.081 143.476 148.554 1 2.07 ? C9A FAD 804 C 1 HETATM 39 N N10 FAD . . . M 4 151.035 144.51 148.631 1 2.07 ? N10 FAD 804 C 1 HETATM 40 C C10 FAD . . . M 4 151.191 145.219 149.811 1 2.07 ? C10 FAD 804 C 1 HETATM 41 C C1' FAD . . . M 4 151.975 144.727 147.503 1 2.07 ? C1' FAD 804 C 1 HETATM 42 C C2' FAD . . . M 4 151.982 146.125 146.879 1 2.07 ? C2' FAD 804 C 1 HETATM 43 O O2' FAD . . . M 4 152.964 146.953 147.506 1 2.07 ? O2' FAD 804 C 1 HETATM 44 C C3' FAD . . . M 4 150.586 146.744 146.916 1 2.07 ? C3' FAD 804 C 1 HETATM 45 O O3' FAD . . . M 4 149.614 145.73 146.7 1 2.07 ? O3' FAD 804 C 1 HETATM 46 C C4' FAD . . . M 4 150.372 147.817 145.847 1 2.07 ? C4' FAD 804 C 1 HETATM 47 O O4' FAD . . . M 4 149.764 147.204 144.712 1 2.07 ? O4' FAD 804 C 1 HETATM 48 C C5' FAD . . . M 4 151.628 148.546 145.416 1 2.07 ? C5' FAD 804 C 1 HETATM 49 O O5' FAD . . . M 4 151.272 149.58 144.476 1 2.07 ? O5' FAD 804 C 1 HETATM 50 P P FAD . . . M 4 152.326 150.636 143.977 1 2.07 ? P FAD 804 C 1 HETATM 51 O O1P FAD . . . M 4 151.642 151.693 143.11 1 2.07 ? O1P FAD 804 C 1 HETATM 52 O O2P FAD . . . M 4 153.075 151.158 145.103 1 2.07 ? O2P FAD 804 C 1 HETATM 53 O O3P FAD . . . M 4 153.276 149.804 143.043 1 2.07 ? O3P FAD 804 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 53 #