data_8U8Y # _model_server_result.job_id 9H9YZPP6NaYCcmno4PE66Q _model_server_result.datetime_utc '2024-12-26 12:55:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u8y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":602}' # _entry.id 8U8Y # _exptl.entry_id 8U8Y _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8U8Y _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8U8Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 L N N ? 3 N N N ? 3 P N N ? 3 R N N ? 3 T N N ? 3 V N N ? 3 X N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 273 n n PA O2A NAD sing 274 n n PA O5B NAD sing 275 n n PA O3 NAD sing 276 n n O2A HOA2 NAD sing 277 n n O5B C5B NAD sing 278 n n C5B C4B NAD sing 279 n n C5B H51A NAD sing 280 n n C5B H52A NAD sing 281 n n C4B O4B NAD sing 282 n n C4B C3B NAD sing 283 n n C4B H4B NAD sing 284 n n O4B C1B NAD sing 285 n n C3B O3B NAD sing 286 n n C3B C2B NAD sing 287 n n C3B H3B NAD sing 288 n n O3B HO3A NAD sing 289 n n C2B O2B NAD sing 290 n n C2B C1B NAD sing 291 n n C2B H2B NAD sing 292 n n O2B HO2A NAD sing 293 n n C1B N9A NAD sing 294 n n C1B H1B NAD sing 295 n n N9A C8A NAD sing 296 n y N9A C4A NAD sing 297 n y C8A N7A NAD doub 298 n y C8A H8A NAD sing 299 n n N7A C5A NAD sing 300 n y C5A C6A NAD sing 301 n y C5A C4A NAD doub 302 n y C6A N6A NAD sing 303 n n C6A N1A NAD doub 304 n y N6A H61A NAD sing 305 n n N6A H62A NAD sing 306 n n N1A C2A NAD sing 307 n y C2A N3A NAD doub 308 n y C2A H2A NAD sing 309 n n N3A C4A NAD sing 310 n y O3 PN NAD sing 311 n n PN O1N NAD doub 312 n n PN O2N NAD sing 313 n n PN O5D NAD sing 314 n n O5D C5D NAD sing 315 n n C5D C4D NAD sing 316 n n C5D H51N NAD sing 317 n n C5D H52N NAD sing 318 n n C4D O4D NAD sing 319 n n C4D C3D NAD sing 320 n n C4D H4D NAD sing 321 n n O4D C1D NAD sing 322 n n C3D O3D NAD sing 323 n n C3D C2D NAD sing 324 n n C3D H3D NAD sing 325 n n O3D HO3N NAD sing 326 n n C2D O2D NAD sing 327 n n C2D C1D NAD sing 328 n n C2D H2D NAD sing 329 n n O2D HO2N NAD sing 330 n n C1D N1N NAD sing 331 n n C1D H1D NAD sing 332 n n N1N C2N NAD sing 333 n y N1N C6N NAD doub 334 n y C2N C3N NAD doub 335 n y C2N H2N NAD sing 336 n n C3N C7N NAD sing 337 n n C3N C4N NAD sing 338 n y C7N O7N NAD doub 339 n n C7N N7N NAD sing 340 n n N7N H71N NAD sing 341 n n N7N H72N NAD sing 342 n n C4N C5N NAD doub 343 n y C4N H4N NAD sing 344 n n C5N C6N NAD sing 345 n y C5N H5N NAD sing 346 n n C6N H6N NAD sing 347 n n # _atom_sites.entry_id 8U8Y _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 IMP A 1 601 603 IMP IMP . J 3 NAD A 1 602 604 NAD NAD . K 2 IMP B 1 601 603 IMP IMP . L 3 NAD B 1 602 604 NAD NAD . M 2 IMP C 1 601 603 IMP IMP . N 3 NAD C 1 602 604 NAD NAD . O 2 IMP D 1 601 603 IMP IMP . P 3 NAD D 1 602 604 NAD NAD . Q 2 IMP E 1 601 603 IMP IMP . R 3 NAD E 1 602 604 NAD NAD . S 2 IMP F 1 601 603 IMP IMP . T 3 NAD F 1 602 604 NAD NAD . U 2 IMP G 1 601 603 IMP IMP . V 3 NAD G 1 602 604 NAD NAD . W 2 IMP H 1 601 603 IMP IMP . X 3 NAD H 1 602 604 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . V 3 170.326 203.538 194.36 1 16.51 ? PA NAD 602 G 1 HETATM 2 O O1A NAD . . . V 3 171.192 203.284 193.176 1 16.51 ? O1A NAD 602 G 1 HETATM 3 O O2A NAD . . . V 3 170.387 204.872 195.014 1 16.51 ? O2A NAD 602 G 1 HETATM 4 O O5B NAD . . . V 3 168.811 203.19 193.984 1 16.51 ? O5B NAD 602 G 1 HETATM 5 C C5B NAD . . . V 3 167.712 203.536 194.86 1 16.51 ? C5B NAD 602 G 1 HETATM 6 C C4B NAD . . . V 3 166.562 204.058 194.036 1 16.51 ? C4B NAD 602 G 1 HETATM 7 O O4B NAD . . . V 3 166.773 205.466 193.766 1 16.51 ? O4B NAD 602 G 1 HETATM 8 C C3B NAD . . . V 3 166.359 203.397 192.665 1 16.51 ? C3B NAD 602 G 1 HETATM 9 O O3B NAD . . . V 3 164.965 203.216 192.462 1 16.51 ? O3B NAD 602 G 1 HETATM 10 C C2B NAD . . . V 3 167.053 204.387 191.72 1 16.51 ? C2B NAD 602 G 1 HETATM 11 O O2B NAD . . . V 3 166.599 204.361 190.388 1 16.51 ? O2B NAD 602 G 1 HETATM 12 C C1B NAD . . . V 3 166.701 205.712 192.383 1 16.51 ? C1B NAD 602 G 1 HETATM 13 N N9A NAD . . . V 3 167.608 206.806 192.056 1 16.51 ? N9A NAD 602 G 1 HETATM 14 C C8A NAD . . . V 3 168.978 206.774 192.089 1 16.51 ? C8A NAD 602 G 1 HETATM 15 N N7A NAD . . . V 3 169.529 207.908 191.745 1 16.51 ? N7A NAD 602 G 1 HETATM 16 C C5A NAD . . . V 3 168.463 208.74 191.458 1 16.51 ? C5A NAD 602 G 1 HETATM 17 C C6A NAD . . . V 3 168.396 210.083 191.045 1 16.51 ? C6A NAD 602 G 1 HETATM 18 N N6A NAD . . . V 3 169.463 210.839 190.82 1 16.51 ? N6A NAD 602 G 1 HETATM 19 N N1A NAD . . . V 3 167.168 210.615 190.852 1 16.51 ? N1A NAD 602 G 1 HETATM 20 C C2A NAD . . . V 3 166.099 209.843 191.069 1 16.51 ? C2A NAD 602 G 1 HETATM 21 N N3A NAD . . . V 3 166.042 208.578 191.465 1 16.51 ? N3A NAD 602 G 1 HETATM 22 C C4A NAD . . . V 3 167.27 208.073 191.645 1 16.51 ? C4A NAD 602 G 1 HETATM 23 O O3 NAD . . . V 3 170.614 202.386 195.436 1 16.51 ? O3 NAD 602 G 1 HETATM 24 P PN NAD . . . V 3 170.359 200.803 195.366 1 16.51 ? PN NAD 602 G 1 HETATM 25 O O1N NAD . . . V 3 170.329 200.411 193.935 1 16.51 ? O1N NAD 602 G 1 HETATM 26 O O2N NAD . . . V 3 169.166 200.484 196.201 1 16.51 ? O2N NAD 602 G 1 HETATM 27 O O5D NAD . . . V 3 171.684 200.242 196.06 1 16.51 ? O5D NAD 602 G 1 HETATM 28 C C5D NAD . . . V 3 171.752 200.165 197.51 1 16.51 ? C5D NAD 602 G 1 HETATM 29 C C4D NAD . . . V 3 173.132 199.756 197.972 1 16.51 ? C4D NAD 602 G 1 HETATM 30 O O4D NAD . . . V 3 173.197 198.324 198.139 1 16.51 ? O4D NAD 602 G 1 HETATM 31 C C3D NAD . . . V 3 174.306 200.067 197.038 1 16.51 ? C3D NAD 602 G 1 HETATM 32 O O3D NAD . . . V 3 175.497 200.132 197.807 1 16.51 ? O3D NAD 602 G 1 HETATM 33 C C2D NAD . . . V 3 174.308 198.861 196.094 1 16.51 ? C2D NAD 602 G 1 HETATM 34 O O2D NAD . . . V 3 175.587 198.667 195.517 1 16.51 ? O2D NAD 602 G 1 HETATM 35 C C1D NAD . . . V 3 173.929 197.733 197.065 1 16.51 ? C1D NAD 602 G 1 HETATM 36 N N1N NAD . . . V 3 173.103 196.688 196.424 1 16.51 ? N1N NAD 602 G 1 HETATM 37 C C2N NAD . . . V 3 173.68 195.891 195.466 1 16.51 ? C2N NAD 602 G 1 HETATM 38 C C3N NAD . . . V 3 172.922 194.912 194.838 1 16.51 ? C3N NAD 602 G 1 HETATM 39 C C7N NAD . . . V 3 173.522 194.018 193.799 1 16.51 ? C7N NAD 602 G 1 HETATM 40 O O7N NAD . . . V 3 172.863 193.06 193.381 1 16.51 ? O7N NAD 602 G 1 HETATM 41 N N7N NAD . . . V 3 174.73 194.295 193.331 1 16.51 ? N7N NAD 602 G 1 HETATM 42 C C4N NAD . . . V 3 171.589 194.743 195.18 1 16.51 ? C4N NAD 602 G 1 HETATM 43 C C5N NAD . . . V 3 171.018 195.558 196.132 1 16.51 ? C5N NAD 602 G 1 HETATM 44 C C6N NAD . . . V 3 171.775 196.525 196.747 1 16.51 ? C6N NAD 602 G 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 44 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #