data_8U93 # _model_server_result.job_id luzqxjEpWO_Kj6PvvWUVrA _model_server_result.datetime_utc '2024-12-26 10:57:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u93 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 8U93 # _exptl.entry_id 8U93 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-DIHYDROXY-1,4-DITHIOBUTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8U93 _cell.length_a 96.406 _cell.length_b 96.406 _cell.length_c 205.982 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8U93 _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -96.406 0 0 3 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 11_455 -x+y-1,y,-z -1 0 0 0 1 0 0 0 -1 -96.406 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 172 A LEU 164 1_555 A N KPI 173 A KPI 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C KPI 173 A KPI 165 1_555 A N GLN 174 A GLN 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 D K K . A K 303 1_555 H O3 1PG . A 1PG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? metalc ? metalc2 D K K . A K 303 1_555 H O4 1PG . A 1PG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc3 D K K . A K 303 1_555 H O5 1PG . A 1PG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc4 D K K . A K 303 1_555 H O2 1PG . A 1PG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.47 ? metalc ? metalc5 D K K . A K 303 1_555 H O1 1PG . A 1PG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.096 ? metalc ? metalc6 D K K . A K 303 1_555 I O HOH . A HOH 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.954 ? metalc ? metalc7 D K K . A K 303 1_555 I O HOH . A HOH 543 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.054 ? # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id DTT _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-DIHYDROXY-1,4-DITHIOBUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,4-DITHIOTHREITOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 DTT sing 123 n n S1 HS1 DTT sing 124 n n C1 C2 DTT sing 125 n n C1 H11 DTT sing 126 n n C1 H12 DTT sing 127 n n C2 O2 DTT sing 128 n n C2 C3 DTT sing 129 n n C2 H2 DTT sing 130 n n O2 HO2 DTT sing 131 n n C3 O3 DTT sing 132 n n C3 C4 DTT sing 133 n n C3 H3 DTT sing 134 n n O3 HO3 DTT sing 135 n n C4 S4 DTT sing 136 n n C4 H41 DTT sing 137 n n C4 H42 DTT sing 138 n n S4 HS2 DTT sing 139 n n # _atom_sites.entry_id 8U93 _atom_sites.fract_transf_matrix[1][1] 0.010373 _atom_sites.fract_transf_matrix[1][2] 0.005989 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011977 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004855 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 301 1 CL CL . C 2 CL A 1 302 2 CL CL . D 3 K A 1 303 1 K K . E 4 DTT A 1 304 1 DTT DTT . F 5 PEG A 1 305 301 PEG PEG . G 6 1PG A 1 306 1 1PG 1PG . H 6 1PG A 1 307 2 1PG 1PG . I 7 HOH A 1 401 61 HOH HOH . I 7 HOH A 2 402 78 HOH HOH . I 7 HOH A 3 403 88 HOH HOH . I 7 HOH A 4 404 68 HOH HOH . I 7 HOH A 5 405 72 HOH HOH . I 7 HOH A 6 406 107 HOH HOH . I 7 HOH A 7 407 30 HOH HOH . I 7 HOH A 8 408 94 HOH HOH . I 7 HOH A 9 409 144 HOH HOH . I 7 HOH A 10 410 11 HOH HOH . I 7 HOH A 11 411 82 HOH HOH . I 7 HOH A 12 412 71 HOH HOH . I 7 HOH A 13 413 49 HOH HOH . I 7 HOH A 14 414 48 HOH HOH . I 7 HOH A 15 415 93 HOH HOH . I 7 HOH A 16 416 114 HOH HOH . I 7 HOH A 17 417 25 HOH HOH . I 7 HOH A 18 418 67 HOH HOH . I 7 HOH A 19 419 131 HOH HOH . I 7 HOH A 20 420 15 HOH HOH . I 7 HOH A 21 421 92 HOH HOH . I 7 HOH A 22 422 52 HOH HOH . I 7 HOH A 23 423 7 HOH HOH . I 7 HOH A 24 424 105 HOH HOH . I 7 HOH A 25 425 112 HOH HOH . I 7 HOH A 26 426 44 HOH HOH . I 7 HOH A 27 427 113 HOH HOH . I 7 HOH A 28 428 8 HOH HOH . I 7 HOH A 29 429 10 HOH HOH . I 7 HOH A 30 430 56 HOH HOH . I 7 HOH A 31 431 38 HOH HOH . I 7 HOH A 32 432 108 HOH HOH . I 7 HOH A 33 433 20 HOH HOH . I 7 HOH A 34 434 74 HOH HOH . I 7 HOH A 35 435 75 HOH HOH . I 7 HOH A 36 436 6 HOH HOH . I 7 HOH A 37 437 29 HOH HOH . I 7 HOH A 38 438 83 HOH HOH . I 7 HOH A 39 439 51 HOH HOH . I 7 HOH A 40 440 12 HOH HOH . I 7 HOH A 41 441 133 HOH HOH . I 7 HOH A 42 442 23 HOH HOH . I 7 HOH A 43 443 86 HOH HOH . I 7 HOH A 44 444 139 HOH HOH . I 7 HOH A 45 445 119 HOH HOH . I 7 HOH A 46 446 142 HOH HOH . I 7 HOH A 47 447 143 HOH HOH . I 7 HOH A 48 448 40 HOH HOH . I 7 HOH A 49 449 84 HOH HOH . I 7 HOH A 50 450 45 HOH HOH . I 7 HOH A 51 451 73 HOH HOH . I 7 HOH A 52 452 16 HOH HOH . I 7 HOH A 53 453 130 HOH HOH . I 7 HOH A 54 454 19 HOH HOH . I 7 HOH A 55 455 21 HOH HOH . I 7 HOH A 56 456 22 HOH HOH . I 7 HOH A 57 457 39 HOH HOH . I 7 HOH A 58 458 85 HOH HOH . I 7 HOH A 59 459 37 HOH HOH . I 7 HOH A 60 460 4 HOH HOH . I 7 HOH A 61 461 62 HOH HOH . I 7 HOH A 62 462 33 HOH HOH . I 7 HOH A 63 463 103 HOH HOH . I 7 HOH A 64 464 3 HOH HOH . I 7 HOH A 65 465 76 HOH HOH . I 7 HOH A 66 466 125 HOH HOH . I 7 HOH A 67 467 5 HOH HOH . I 7 HOH A 68 468 87 HOH HOH . I 7 HOH A 69 469 32 HOH HOH . I 7 HOH A 70 470 50 HOH HOH . I 7 HOH A 71 471 2 HOH HOH . I 7 HOH A 72 472 106 HOH HOH . I 7 HOH A 73 473 34 HOH HOH . I 7 HOH A 74 474 9 HOH HOH . I 7 HOH A 75 475 24 HOH HOH . I 7 HOH A 76 476 60 HOH HOH . I 7 HOH A 77 477 80 HOH HOH . I 7 HOH A 78 478 66 HOH HOH . I 7 HOH A 79 479 77 HOH HOH . I 7 HOH A 80 480 36 HOH HOH . I 7 HOH A 81 481 117 HOH HOH . I 7 HOH A 82 482 65 HOH HOH . I 7 HOH A 83 483 18 HOH HOH . I 7 HOH A 84 484 14 HOH HOH . I 7 HOH A 85 485 70 HOH HOH . I 7 HOH A 86 486 69 HOH HOH . I 7 HOH A 87 487 41 HOH HOH . I 7 HOH A 88 488 28 HOH HOH . I 7 HOH A 89 489 99 HOH HOH . I 7 HOH A 90 490 35 HOH HOH . I 7 HOH A 91 491 81 HOH HOH . I 7 HOH A 92 492 53 HOH HOH . I 7 HOH A 93 493 17 HOH HOH . I 7 HOH A 94 494 27 HOH HOH . I 7 HOH A 95 495 64 HOH HOH . I 7 HOH A 96 496 13 HOH HOH . I 7 HOH A 97 497 100 HOH HOH . I 7 HOH A 98 498 97 HOH HOH . I 7 HOH A 99 499 47 HOH HOH . I 7 HOH A 100 500 59 HOH HOH . I 7 HOH A 101 501 110 HOH HOH . I 7 HOH A 102 502 43 HOH HOH . I 7 HOH A 103 503 54 HOH HOH . I 7 HOH A 104 504 145 HOH HOH . I 7 HOH A 105 505 58 HOH HOH . I 7 HOH A 106 506 57 HOH HOH . I 7 HOH A 107 507 132 HOH HOH . I 7 HOH A 108 508 79 HOH HOH . I 7 HOH A 109 509 96 HOH HOH . I 7 HOH A 110 510 42 HOH HOH . I 7 HOH A 111 511 26 HOH HOH . I 7 HOH A 112 512 91 HOH HOH . I 7 HOH A 113 513 121 HOH HOH . I 7 HOH A 114 514 63 HOH HOH . I 7 HOH A 115 515 101 HOH HOH . I 7 HOH A 116 516 46 HOH HOH . I 7 HOH A 117 517 89 HOH HOH . I 7 HOH A 118 518 127 HOH HOH . I 7 HOH A 119 519 136 HOH HOH . I 7 HOH A 120 520 148 HOH HOH . I 7 HOH A 121 521 98 HOH HOH . I 7 HOH A 122 522 102 HOH HOH . I 7 HOH A 123 523 1 HOH HOH . I 7 HOH A 124 524 31 HOH HOH . I 7 HOH A 125 525 147 HOH HOH . I 7 HOH A 126 526 111 HOH HOH . I 7 HOH A 127 527 134 HOH HOH . I 7 HOH A 128 528 140 HOH HOH . I 7 HOH A 129 529 150 HOH HOH . I 7 HOH A 130 530 95 HOH HOH . I 7 HOH A 131 531 138 HOH HOH . I 7 HOH A 132 532 120 HOH HOH . I 7 HOH A 133 533 123 HOH HOH . I 7 HOH A 134 534 137 HOH HOH . I 7 HOH A 135 535 135 HOH HOH . I 7 HOH A 136 536 55 HOH HOH . I 7 HOH A 137 537 118 HOH HOH . I 7 HOH A 138 538 151 HOH HOH . I 7 HOH A 139 539 90 HOH HOH . I 7 HOH A 140 540 141 HOH HOH . I 7 HOH A 141 541 104 HOH HOH . I 7 HOH A 142 542 146 HOH HOH . I 7 HOH A 143 543 149 HOH HOH . I 7 HOH A 144 544 122 HOH HOH . I 7 HOH A 145 545 115 HOH HOH . I 7 HOH A 146 546 129 HOH HOH . I 7 HOH A 147 547 128 HOH HOH . I 7 HOH A 148 548 126 HOH HOH . I 7 HOH A 149 549 109 HOH HOH . I 7 HOH A 150 550 124 HOH HOH . I 7 HOH A 151 551 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 DTT . . . E 4 -47.885 -1.506 6.051 0.5 90.23 ? S1 DTT 304 A 1 HETATM 2 C C1 DTT . . . E 4 -47.767 -1.997 7.809 0.5 93.95 ? C1 DTT 304 A 1 HETATM 3 C C2 DTT . . . E 4 -47.58 -0.775 8.701 0.5 91.78 ? C2 DTT 304 A 1 HETATM 4 O O2 DTT . . . E 4 -47.384 -1.261 10.01 0.5 86.56 ? O2 DTT 304 A 1 HETATM 5 C C3 DTT . . . E 4 -48.733 0.247 8.708 0.5 91.88 ? C3 DTT 304 A 1 HETATM 6 O O3 DTT . . . E 4 -48.829 0.629 10.07 0.5 86.64 ? O3 DTT 304 A 1 HETATM 7 C C4 DTT . . . E 4 -48.484 1.484 7.83 0.5 94.33 ? C4 DTT 304 A 1 HETATM 8 S S4 DTT . . . E 4 -49.937 2.53 7.437 0.5 90.26 ? S4 DTT 304 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 8 #