data_8U96 # _model_server_result.job_id qZB6UTwH4CFOERkRbE0-FA _model_server_result.datetime_utc '2024-12-26 23:23:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u96 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8U96 # _exptl.entry_id 8U96 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.7 _cell.angle_gamma 90 _cell.entry_id 8U96 _cell.length_a 32.635 _cell.length_b 49.131 _cell.length_c 63.683 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8U96 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8U96 _atom_sites.fract_transf_matrix[1][1] 0.030642 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0036 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020354 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015811 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 301 301 ATP ATP . C 3 PEG A 1 302 302 PEG PEG . D 4 MPD A 1 303 303 MPD MPD . E 5 CL A 1 304 1 CL CL . F 6 HOH A 1 401 5 HOH HOH . F 6 HOH A 2 402 107 HOH HOH . F 6 HOH A 3 403 104 HOH HOH . F 6 HOH A 4 404 28 HOH HOH . F 6 HOH A 5 405 29 HOH HOH . F 6 HOH A 6 406 100 HOH HOH . F 6 HOH A 7 407 119 HOH HOH . F 6 HOH A 8 408 128 HOH HOH . F 6 HOH A 9 409 47 HOH HOH . F 6 HOH A 10 410 102 HOH HOH . F 6 HOH A 11 411 30 HOH HOH . F 6 HOH A 12 412 1 HOH HOH . F 6 HOH A 13 413 124 HOH HOH . F 6 HOH A 14 414 89 HOH HOH . F 6 HOH A 15 415 99 HOH HOH . F 6 HOH A 16 416 135 HOH HOH . F 6 HOH A 17 417 110 HOH HOH . F 6 HOH A 18 418 53 HOH HOH . F 6 HOH A 19 419 79 HOH HOH . F 6 HOH A 20 420 11 HOH HOH . F 6 HOH A 21 421 80 HOH HOH . F 6 HOH A 22 422 143 HOH HOH . F 6 HOH A 23 423 115 HOH HOH . F 6 HOH A 24 424 133 HOH HOH . F 6 HOH A 25 425 144 HOH HOH . F 6 HOH A 26 426 116 HOH HOH . F 6 HOH A 27 427 117 HOH HOH . F 6 HOH A 28 428 127 HOH HOH . F 6 HOH A 29 429 101 HOH HOH . F 6 HOH A 30 430 70 HOH HOH . F 6 HOH A 31 431 7 HOH HOH . F 6 HOH A 32 432 58 HOH HOH . F 6 HOH A 33 433 106 HOH HOH . F 6 HOH A 34 434 90 HOH HOH . F 6 HOH A 35 435 132 HOH HOH . F 6 HOH A 36 436 20 HOH HOH . F 6 HOH A 37 437 57 HOH HOH . F 6 HOH A 38 438 78 HOH HOH . F 6 HOH A 39 439 8 HOH HOH . F 6 HOH A 40 440 4 HOH HOH . F 6 HOH A 41 441 65 HOH HOH . F 6 HOH A 42 442 64 HOH HOH . F 6 HOH A 43 443 6 HOH HOH . F 6 HOH A 44 444 33 HOH HOH . F 6 HOH A 45 445 16 HOH HOH . F 6 HOH A 46 446 95 HOH HOH . F 6 HOH A 47 447 141 HOH HOH . F 6 HOH A 48 448 72 HOH HOH . F 6 HOH A 49 449 23 HOH HOH . F 6 HOH A 50 450 92 HOH HOH . F 6 HOH A 51 451 38 HOH HOH . F 6 HOH A 52 452 18 HOH HOH . F 6 HOH A 53 453 68 HOH HOH . F 6 HOH A 54 454 96 HOH HOH . F 6 HOH A 55 455 45 HOH HOH . F 6 HOH A 56 456 137 HOH HOH . F 6 HOH A 57 457 14 HOH HOH . F 6 HOH A 58 458 10 HOH HOH . F 6 HOH A 59 459 138 HOH HOH . F 6 HOH A 60 460 51 HOH HOH . F 6 HOH A 61 461 12 HOH HOH . F 6 HOH A 62 462 109 HOH HOH . F 6 HOH A 63 463 71 HOH HOH . F 6 HOH A 64 464 46 HOH HOH . F 6 HOH A 65 465 9 HOH HOH . F 6 HOH A 66 466 34 HOH HOH . F 6 HOH A 67 467 67 HOH HOH . F 6 HOH A 68 468 62 HOH HOH . F 6 HOH A 69 469 19 HOH HOH . F 6 HOH A 70 470 2 HOH HOH . F 6 HOH A 71 471 13 HOH HOH . F 6 HOH A 72 472 17 HOH HOH . F 6 HOH A 73 473 22 HOH HOH . F 6 HOH A 74 474 142 HOH HOH . F 6 HOH A 75 475 86 HOH HOH . F 6 HOH A 76 476 24 HOH HOH . F 6 HOH A 77 477 84 HOH HOH . F 6 HOH A 78 478 49 HOH HOH . F 6 HOH A 79 479 69 HOH HOH . F 6 HOH A 80 480 139 HOH HOH . F 6 HOH A 81 481 31 HOH HOH . F 6 HOH A 82 482 36 HOH HOH . F 6 HOH A 83 483 48 HOH HOH . F 6 HOH A 84 484 43 HOH HOH . F 6 HOH A 85 485 108 HOH HOH . F 6 HOH A 86 486 42 HOH HOH . F 6 HOH A 87 487 40 HOH HOH . F 6 HOH A 88 488 82 HOH HOH . F 6 HOH A 89 489 32 HOH HOH . F 6 HOH A 90 490 60 HOH HOH . F 6 HOH A 91 491 63 HOH HOH . F 6 HOH A 92 492 113 HOH HOH . F 6 HOH A 93 493 73 HOH HOH . F 6 HOH A 94 494 55 HOH HOH . F 6 HOH A 95 495 37 HOH HOH . F 6 HOH A 96 496 114 HOH HOH . F 6 HOH A 97 497 129 HOH HOH . F 6 HOH A 98 498 35 HOH HOH . F 6 HOH A 99 499 123 HOH HOH . F 6 HOH A 100 500 112 HOH HOH . F 6 HOH A 101 501 50 HOH HOH . F 6 HOH A 102 502 81 HOH HOH . F 6 HOH A 103 503 75 HOH HOH . F 6 HOH A 104 504 56 HOH HOH . F 6 HOH A 105 505 87 HOH HOH . F 6 HOH A 106 506 3 HOH HOH . F 6 HOH A 107 507 54 HOH HOH . F 6 HOH A 108 508 27 HOH HOH . F 6 HOH A 109 509 25 HOH HOH . F 6 HOH A 110 510 39 HOH HOH . F 6 HOH A 111 511 126 HOH HOH . F 6 HOH A 112 512 74 HOH HOH . F 6 HOH A 113 513 85 HOH HOH . F 6 HOH A 114 514 41 HOH HOH . F 6 HOH A 115 515 125 HOH HOH . F 6 HOH A 116 516 21 HOH HOH . F 6 HOH A 117 517 120 HOH HOH . F 6 HOH A 118 518 145 HOH HOH . F 6 HOH A 119 519 52 HOH HOH . F 6 HOH A 120 520 111 HOH HOH . F 6 HOH A 121 521 88 HOH HOH . F 6 HOH A 122 522 15 HOH HOH . F 6 HOH A 123 523 59 HOH HOH . F 6 HOH A 124 524 131 HOH HOH . F 6 HOH A 125 525 61 HOH HOH . F 6 HOH A 126 526 97 HOH HOH . F 6 HOH A 127 527 98 HOH HOH . F 6 HOH A 128 528 44 HOH HOH . F 6 HOH A 129 529 136 HOH HOH . F 6 HOH A 130 530 103 HOH HOH . F 6 HOH A 131 531 83 HOH HOH . F 6 HOH A 132 532 134 HOH HOH . F 6 HOH A 133 533 94 HOH HOH . F 6 HOH A 134 534 66 HOH HOH . F 6 HOH A 135 535 91 HOH HOH . F 6 HOH A 136 536 26 HOH HOH . F 6 HOH A 137 537 76 HOH HOH . F 6 HOH A 138 538 130 HOH HOH . F 6 HOH A 139 539 118 HOH HOH . F 6 HOH A 140 540 146 HOH HOH . F 6 HOH A 141 541 121 HOH HOH . F 6 HOH A 142 542 93 HOH HOH . F 6 HOH A 143 543 105 HOH HOH . F 6 HOH A 144 544 140 HOH HOH . F 6 HOH A 145 545 77 HOH HOH . F 6 HOH A 146 546 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 -6.801 16.892 -15.813 1 31.08 ? PG ATP 301 A 1 HETATM 2 O O1G ATP . . . B 2 -6.197 18.207 -15.449 1 44.94 ? O1G ATP 301 A 1 HETATM 3 O O2G ATP . . . B 2 -5.935 16.163 -16.858 1 31.95 ? O2G ATP 301 A 1 HETATM 4 O O3G ATP . . . B 2 -8.238 17.036 -16.212 1 23.13 ? O3G ATP 301 A 1 HETATM 5 P PB ATP . . . B 2 -7.346 15.93 -13.049 1 25.7 ? PB ATP 301 A 1 HETATM 6 O O1B ATP . . . B 2 -8.463 16.871 -12.825 1 21.12 ? O1B ATP 301 A 1 HETATM 7 O O2B ATP . . . B 2 -7.562 14.432 -12.827 1 23.92 ? O2B ATP 301 A 1 HETATM 8 O O3B ATP . . . B 2 -6.786 15.967 -14.543 1 33.09 ? O3B ATP 301 A 1 HETATM 9 P PA ATP . . . B 2 -4.987 15.645 -11.316 1 27.31 ? PA ATP 301 A 1 HETATM 10 O O1A ATP . . . B 2 -4.072 14.924 -12.237 1 29.4 ? O1A ATP 301 A 1 HETATM 11 O O2A ATP . . . B 2 -5.695 14.797 -10.247 1 28.81 ? O2A ATP 301 A 1 HETATM 12 O O3A ATP . . . B 2 -6.088 16.371 -12.191 1 27.27 ? O3A ATP 301 A 1 HETATM 13 O O5' ATP . . . B 2 -4.273 16.845 -10.583 1 25.35 ? O5' ATP 301 A 1 HETATM 14 C C5' ATP . . . B 2 -3.756 17.968 -11.326 1 24.74 ? C5' ATP 301 A 1 HETATM 15 C C4' ATP . . . B 2 -2.386 18.337 -10.803 1 25.83 ? C4' ATP 301 A 1 HETATM 16 O O4' ATP . . . B 2 -2.585 18.893 -9.485 1 26.41 ? O4' ATP 301 A 1 HETATM 17 C C3' ATP . . . B 2 -1.515 17.101 -10.592 1 28.23 ? C3' ATP 301 A 1 HETATM 18 O O3' ATP . . . B 2 -0.18 17.56 -10.795 1 28.18 ? O3' ATP 301 A 1 HETATM 19 C C2' ATP . . . B 2 -1.739 16.771 -9.117 1 28.68 ? C2' ATP 301 A 1 HETATM 20 O O2' ATP . . . B 2 -0.507 16.3 -8.573 1 32.6 ? O2' ATP 301 A 1 HETATM 21 C C1' ATP . . . B 2 -1.851 18.165 -8.524 1 26.02 ? C1' ATP 301 A 1 HETATM 22 N N9 ATP . . . B 2 -2.657 18.206 -7.306 1 25.28 ? N9 ATP 301 A 1 HETATM 23 C C8 ATP . . . B 2 -3.744 17.437 -6.977 1 30.32 ? C8 ATP 301 A 1 HETATM 24 N N7 ATP . . . B 2 -4.289 17.75 -5.825 1 28.34 ? N7 ATP 301 A 1 HETATM 25 C C5 ATP . . . B 2 -3.526 18.819 -5.383 1 24.95 ? C5 ATP 301 A 1 HETATM 26 C C6 ATP . . . B 2 -3.581 19.62 -4.226 1 28.57 ? C6 ATP 301 A 1 HETATM 27 N N6 ATP . . . B 2 -4.489 19.46 -3.258 1 33.6 ? N6 ATP 301 A 1 HETATM 28 N N1 ATP . . . B 2 -2.66 20.598 -4.089 1 28.47 ? N1 ATP 301 A 1 HETATM 29 C C2 ATP . . . B 2 -1.755 20.77 -5.056 1 33.33 ? C2 ATP 301 A 1 HETATM 30 N N3 ATP . . . B 2 -1.604 20.08 -6.187 1 33.01 ? N3 ATP 301 A 1 HETATM 31 C C4 ATP . . . B 2 -2.52 19.118 -6.292 1 29.7 ? C4 ATP 301 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 25 _model_server_stats.element_count 31 #