data_8U9E # _model_server_result.job_id jjj2krYxquVgN3TANQvr1g _model_server_result.datetime_utc '2024-10-10 18:20:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8u9e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":306}' # _entry.id 8U9E # _exptl.entry_id 8U9E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8U9E _cell.length_a 182.407 _cell.length_b 182.407 _cell.length_c 96.626 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8U9E _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall 'R 3 2"' _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 6 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 246 n n C1 C2 PGE sing 247 n n C1 H1 PGE sing 248 n n C1 H12 PGE sing 249 n n O1 HO1 PGE sing 250 n n C2 O2 PGE sing 251 n n C2 H2 PGE sing 252 n n C2 H22 PGE sing 253 n n O2 C3 PGE sing 254 n n C3 C4 PGE sing 255 n n C3 H3 PGE sing 256 n n C3 H32 PGE sing 257 n n C4 O3 PGE sing 258 n n C4 H4 PGE sing 259 n n C4 H42 PGE sing 260 n n O4 C6 PGE sing 261 n n O4 HO4 PGE sing 262 n n C6 C5 PGE sing 263 n n C6 H6 PGE sing 264 n n C6 H62 PGE sing 265 n n C5 O3 PGE sing 266 n n C5 H5 PGE sing 267 n n C5 H52 PGE sing 268 n n # _atom_sites.entry_id 8U9E _atom_sites.fract_transf_matrix[1][1] 0.005482 _atom_sites.fract_transf_matrix[1][2] 0.003165 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00633 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010349 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 301 301 EDO EDO . D 2 EDO A 1 302 302 EDO EDO . E 3 PO4 A 1 303 2 PO4 PO4 . F 2 EDO B 1 301 300 EDO EDO . G 2 EDO B 1 302 303 EDO EDO . H 3 PO4 B 1 303 304 PO4 PO4 . I 4 CL B 1 304 305 CL CL . J 2 EDO B 1 305 306 EDO EDO . K 5 PGE B 1 306 1 PGE PGE . L 3 PO4 B 1 307 5 PO4 PO4 . M 6 HOH B 1 401 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . K 5 1.048 28.592 34.52 1 100.4 ? C1 PGE 306 B 1 HETATM 2 O O1 PGE . . . K 5 -0.126 29.362 34.385 1 87.78 ? O1 PGE 306 B 1 HETATM 3 C C2 PGE . . . K 5 1.783 29.002 35.771 1 101.45 ? C2 PGE 306 B 1 HETATM 4 O O2 PGE . . . K 5 2.389 30.258 35.568 1 103.05 ? O2 PGE 306 B 1 HETATM 5 C C3 PGE . . . K 5 2.798 30.936 36.729 1 100.56 ? C3 PGE 306 B 1 HETATM 6 C C4 PGE . . . K 5 3.872 31.977 36.495 1 90.65 ? C4 PGE 306 B 1 HETATM 7 O O4 PGE . . . K 5 4.846 32.929 40.277 1 70.49 ? O4 PGE 306 B 1 HETATM 8 C C6 PGE . . . K 5 5.903 32.425 39.494 1 79.16 ? C6 PGE 306 B 1 HETATM 9 C C5 PGE . . . K 5 5.293 31.661 38.336 1 91.75 ? C5 PGE 306 B 1 HETATM 10 O O3 PGE . . . K 5 4.343 32.488 37.716 1 105.1 ? O3 PGE 306 B 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #