data_8U9Q
#
_model_server_result.job_id            gXVVGTlWCu8VA6F9umDusQ 
_model_server_result.datetime_utc      '2024-11-30 23:50:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8u9q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":901}' 
#
_entry.id    8U9Q 
#
_exptl.entry_id    8U9Q 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 T N N 
? 5 U N N 
? 5 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 262 A THR 262 1_555 I MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.873 ? 
metalc ? metalc2 H O2A 08T . A 08T 901 1_555 I MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? 
metalc ? metalc3 H O2B 08T . A 08T 901 1_555 I MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? 
metalc ? metalc4 I MG MG . A MG 902 1_555 B OD1 ASP 343 B ASP 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc5 I MG MG . A MG 902 1_555 B OD2 ASP 343 B ASP 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc6 J O1A 08T . A 08T 903 1_555 K MG MG . A MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? 
metalc ? metalc7 J O2B 08T . A 08T 903 1_555 K MG MG . A MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.895 ? 
metalc ? metalc8 B OG1 THR 262 B THR 262 1_555 M MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.87 ? 
metalc ? metalc9 B OG1 THR 535 B THR 535 1_555 O MG MG . B MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc10 L O2B 08T . B 08T 901 1_555 M MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? 
metalc ? metalc11 N O1A 08T . B 08T 903 1_555 O MG MG . B MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? 
metalc ? metalc12 N O2A 08T . B 08T 903 1_555 O MG MG . B MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.956 ? 
metalc ? metalc13 N O2B 08T . B 08T 903 1_555 O MG MG . B MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc14 N O3A 08T . B 08T 903 1_555 O MG MG . B MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
metalc ? metalc15 C OG1 THR 262 C THR 262 1_555 Q MG MG . C MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? 
metalc ? metalc16 C OG1 THR 535 C THR 535 1_555 S MG MG . C MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.789 ? 
metalc ? metalc17 P O1A 08T . C 08T 901 1_555 Q MG MG . C MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? 
metalc ? metalc18 P O2B 08T . C 08T 901 1_555 Q MG MG . C MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? 
metalc ? metalc19 Q MG MG . C MG 902 1_555 D OD2 ASP 343 D ASP 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
metalc ? metalc20 R O2B 08T . C 08T 903 1_555 S MG MG . C MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 48 n n 
PB O2B ADP sing 49 n n 
PB O3B ADP sing 50 n n 
PB O3A ADP sing 51 n n 
O2B HOB2 ADP sing 52 n n 
O3B HOB3 ADP sing 53 n n 
PA O1A ADP doub 54 n n 
PA O2A ADP sing 55 n n 
PA O3A ADP sing 56 n n 
PA O5' ADP sing 57 n n 
O2A HOA2 ADP sing 58 n n 
O5' C5' ADP sing 59 n n 
C5' C4' ADP sing 60 n n 
C5' "H5'1" ADP sing 61 n n 
C5' "H5'2" ADP sing 62 n n 
C4' O4' ADP sing 63 n n 
C4' C3' ADP sing 64 n n 
C4' H4' ADP sing 65 n n 
O4' C1' ADP sing 66 n n 
C3' O3' ADP sing 67 n n 
C3' C2' ADP sing 68 n n 
C3' H3' ADP sing 69 n n 
O3' HO3' ADP sing 70 n n 
C2' O2' ADP sing 71 n n 
C2' C1' ADP sing 72 n n 
C2' H2' ADP sing 73 n n 
O2' HO2' ADP sing 74 n n 
C1' N9 ADP sing 75 n n 
C1' H1' ADP sing 76 n n 
N9 C8 ADP sing 77 n y 
N9 C4 ADP sing 78 n y 
C8 N7 ADP doub 79 n y 
C8 H8 ADP sing 80 n n 
N7 C5 ADP sing 81 n y 
C5 C6 ADP sing 82 n y 
C5 C4 ADP doub 83 n y 
C6 N6 ADP sing 84 n n 
C6 N1 ADP doub 85 n y 
N6 HN61 ADP sing 86 n n 
N6 HN62 ADP sing 87 n n 
N1 C2 ADP sing 88 n y 
C2 N3 ADP doub 89 n y 
C2 H2 ADP sing 90 n n 
N3 C4 ADP sing 91 n y 
#
_atom_sites.entry_id                     8U9Q 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 3 08T A 1 901 901 08T ADP . 
I 4 MG A 1 902 903 MG MG . 
J 3 08T A 1 903 904 08T ADP . 
K 4 MG A 1 904 906 MG MG . 
L 3 08T B 1 901 901 08T ADP . 
M 4 MG B 1 902 903 MG MG . 
N 3 08T B 1 903 904 08T ADP . 
O 4 MG B 1 904 906 MG MG . 
P 3 08T C 1 901 901 08T ADP . 
Q 4 MG C 1 902 903 MG MG . 
R 3 08T C 1 903 904 08T ADP . 
S 4 MG C 1 904 906 MG MG . 
T 5 ADP D 1 901 901 ADP ADP . 
U 5 ADP D 1 902 904 ADP ADP . 
V 5 ADP E 1 901 904 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . T 5 142.106 139.353 134.233 1 231.34 ? PB ADP 901 D 1 
HETATM 2 O O1B ADP . . . T 5 142.399 140.788 134.681 1 231.34 ? O1B ADP 901 D 1 
HETATM 3 O O2B ADP . . . T 5 141.158 138.67 135.153 1 231.34 ? O2B ADP 901 D 1 
HETATM 4 O O3B ADP . . . T 5 143.374 138.545 133.992 1 231.34 ? O3B ADP 901 D 1 
HETATM 5 P PA ADP . . . T 5 140.224 140.242 132.096 1 231.34 ? PA ADP 901 D 1 
HETATM 6 O O1A ADP . . . T 5 138.981 139.54 132.476 1 231.34 ? O1A ADP 901 D 1 
HETATM 7 O O2A ADP . . . T 5 140.37 141.731 132.403 1 231.34 ? O2A ADP 901 D 1 
HETATM 8 O O3A ADP . . . T 5 141.444 139.508 132.788 1 231.34 ? O3A ADP 901 D 1 
HETATM 9 O O5' ADP . . . T 5 140.449 140.028 130.547 1 231.34 ? O5' ADP 901 D 1 
HETATM 10 C C5' ADP . . . T 5 139.973 141.004 129.597 1 231.34 ? C5' ADP 901 D 1 
HETATM 11 C C4' ADP . . . T 5 139.76 140.461 128.204 1 231.34 ? C4' ADP 901 D 1 
HETATM 12 O O4' ADP . . . T 5 140.859 139.612 127.821 1 231.34 ? O4' ADP 901 D 1 
HETATM 13 C C3' ADP . . . T 5 138.479 139.639 128.076 1 231.34 ? C3' ADP 901 D 1 
HETATM 14 O O3' ADP . . . T 5 137.527 140.316 127.261 1 231.34 ? O3' ADP 901 D 1 
HETATM 15 C C2' ADP . . . T 5 138.909 138.307 127.441 1 231.34 ? C2' ADP 901 D 1 
HETATM 16 O O2' ADP . . . T 5 138.213 138.051 126.225 1 231.34 ? O2' ADP 901 D 1 
HETATM 17 C C1' ADP . . . T 5 140.412 138.44 127.172 1 231.34 ? C1' ADP 901 D 1 
HETATM 18 N N9 ADP . . . T 5 141.18 137.314 127.691 1 231.34 ? N9 ADP 901 D 1 
HETATM 19 C C8 ADP . . . T 5 142.16 137.346 128.646 1 231.34 ? C8 ADP 901 D 1 
HETATM 20 N N7 ADP . . . T 5 142.692 136.177 128.908 1 231.34 ? N7 ADP 901 D 1 
HETATM 21 C C5 ADP . . . T 5 142.009 135.31 128.069 1 231.34 ? C5 ADP 901 D 1 
HETATM 22 C C6 ADP . . . T 5 142.096 133.92 127.862 1 231.34 ? C6 ADP 901 D 1 
HETATM 23 N N6 ADP . . . T 5 142.945 133.122 128.517 1 231.34 ? N6 ADP 901 D 1 
HETATM 24 N N1 ADP . . . T 5 141.271 133.366 126.945 1 231.34 ? N1 ADP 901 D 1 
HETATM 25 C C2 ADP . . . T 5 140.42 134.158 126.285 1 231.34 ? C2 ADP 901 D 1 
HETATM 26 N N3 ADP . . . T 5 140.249 135.478 126.396 1 231.34 ? N3 ADP 901 D 1 
HETATM 27 C C4 ADP . . . T 5 141.076 135.999 127.308 1 231.34 ? C4 ADP 901 D 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    37 
_model_server_stats.query_time_ms           220 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#