data_8U9Z
#
_model_server_result.job_id            PasCdjS5UfeKPnAMw4eRYA 
_model_server_result.datetime_utc      '2024-11-07 03:32:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8u9z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":902}' 
#
_entry.id    8U9Z 
#
_exptl.entry_id    8U9Z 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 T N N 
? 5 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 262 A THR 262 1_555 I MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.831 ? 
metalc ? metalc2 A OG1 THR 535 A THR 535 1_555 K MG MG . A MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc3 H O2B 08T . A 08T 901 1_555 I MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
metalc ? metalc4 J O1A 08T . A 08T 903 1_555 K MG MG . A MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.933 ? 
metalc ? metalc5 J O2B 08T . A 08T 903 1_555 K MG MG . A MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
metalc ? metalc6 J O3B 08T . A 08T 903 1_555 K MG MG . A MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? 
metalc ? metalc7 B OG1 THR 262 B THR 262 1_555 M MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
metalc ? metalc8 B OG1 THR 535 B THR 535 1_555 O MG MG . B MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.828 ? 
metalc ? metalc9 L O1A 08T . B 08T 901 1_555 M MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
metalc ? metalc10 L O2A 08T . B 08T 901 1_555 M MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? 
metalc ? metalc11 L O2B 08T . B 08T 901 1_555 M MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc12 L O3A 08T . B 08T 901 1_555 M MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? 
metalc ? metalc13 N O2B 08T . B 08T 903 1_555 O MG MG . B MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? 
metalc ? metalc14 C OG1 THR 262 C THR 262 1_555 Q MG MG . C MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? 
metalc ? metalc15 C OG1 THR 535 C THR 535 1_555 S MG MG . C MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.817 ? 
metalc ? metalc16 P O2B 08T . C 08T 901 1_555 Q MG MG . C MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? 
metalc ? metalc17 R O2B 08T . C 08T 903 1_555 S MG MG . C MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 48 n n 
PB O2B ADP sing 49 n n 
PB O3B ADP sing 50 n n 
PB O3A ADP sing 51 n n 
O2B HOB2 ADP sing 52 n n 
O3B HOB3 ADP sing 53 n n 
PA O1A ADP doub 54 n n 
PA O2A ADP sing 55 n n 
PA O3A ADP sing 56 n n 
PA O5' ADP sing 57 n n 
O2A HOA2 ADP sing 58 n n 
O5' C5' ADP sing 59 n n 
C5' C4' ADP sing 60 n n 
C5' "H5'1" ADP sing 61 n n 
C5' "H5'2" ADP sing 62 n n 
C4' O4' ADP sing 63 n n 
C4' C3' ADP sing 64 n n 
C4' H4' ADP sing 65 n n 
O4' C1' ADP sing 66 n n 
C3' O3' ADP sing 67 n n 
C3' C2' ADP sing 68 n n 
C3' H3' ADP sing 69 n n 
O3' HO3' ADP sing 70 n n 
C2' O2' ADP sing 71 n n 
C2' C1' ADP sing 72 n n 
C2' H2' ADP sing 73 n n 
O2' HO2' ADP sing 74 n n 
C1' N9 ADP sing 75 n n 
C1' H1' ADP sing 76 n n 
N9 C8 ADP sing 77 n y 
N9 C4 ADP sing 78 n y 
C8 N7 ADP doub 79 n y 
C8 H8 ADP sing 80 n n 
N7 C5 ADP sing 81 n y 
C5 C6 ADP sing 82 n y 
C5 C4 ADP doub 83 n y 
C6 N6 ADP sing 84 n n 
C6 N1 ADP doub 85 n y 
N6 HN61 ADP sing 86 n n 
N6 HN62 ADP sing 87 n n 
N1 C2 ADP sing 88 n y 
C2 N3 ADP doub 89 n y 
C2 H2 ADP sing 90 n n 
N3 C4 ADP sing 91 n y 
#
_atom_sites.entry_id                     8U9Z 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 3 08T A 1 901 901 08T ADP . 
I 4 MG A 1 902 903 MG MG . 
J 3 08T A 1 903 904 08T ADP . 
K 4 MG A 1 904 906 MG MG . 
L 3 08T B 1 901 901 08T ADP . 
M 4 MG B 1 902 903 MG MG . 
N 3 08T B 1 903 904 08T ADP . 
O 4 MG B 1 904 906 MG MG . 
P 3 08T C 1 901 901 08T ADP . 
Q 4 MG C 1 902 903 MG MG . 
R 3 08T C 1 903 904 08T ADP . 
S 4 MG C 1 904 906 MG MG . 
T 5 ADP D 1 901 901 ADP ADP . 
U 5 ADP D 1 902 904 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . U 5 177.083 146.78 116.069 1 172.71 ? PB ADP 902 D 1 
HETATM 2 O O1B ADP . . . U 5 177.822 145.863 115.088 1 172.71 ? O1B ADP 902 D 1 
HETATM 3 O O2B ADP . . . U 5 176.338 146.012 117.1 1 172.71 ? O2B ADP 902 D 1 
HETATM 4 O O3B ADP . . . U 5 178.004 147.843 116.676 1 172.71 ? O3B ADP 902 D 1 
HETATM 5 P PA ADP . . . U 5 174.624 147.435 114.503 1 172.71 ? PA ADP 902 D 1 
HETATM 6 O O1A ADP . . . U 5 174.387 145.989 114.337 1 172.71 ? O1A ADP 902 D 1 
HETATM 7 O O2A ADP . . . U 5 173.663 148.247 115.369 1 172.71 ? O2A ADP 902 D 1 
HETATM 8 O O3A ADP . . . U 5 176.059 147.602 115.158 1 172.71 ? O3A ADP 902 D 1 
HETATM 9 O O5' ADP . . . U 5 174.744 148.122 113.087 1 172.71 ? O5' ADP 902 D 1 
HETATM 10 C C5' ADP . . . U 5 174.386 149.507 112.903 1 172.71 ? C5' ADP 902 D 1 
HETATM 11 C C4' ADP . . . U 5 174.032 149.774 111.46 1 172.71 ? C4' ADP 902 D 1 
HETATM 12 O O4' ADP . . . U 5 174.968 149.139 110.569 1 172.71 ? O4' ADP 902 D 1 
HETATM 13 C C3' ADP . . . U 5 172.638 149.277 111.085 1 172.71 ? C3' ADP 902 D 1 
HETATM 14 O O3' ADP . . . U 5 171.718 150.361 111.009 1 172.71 ? O3' ADP 902 D 1 
HETATM 15 C C2' ADP . . . U 5 172.816 148.58 109.727 1 172.71 ? C2' ADP 902 D 1 
HETATM 16 O O2' ADP . . . U 5 172.046 149.207 108.705 1 172.71 ? O2' ADP 902 D 1 
HETATM 17 C C1' ADP . . . U 5 174.313 148.673 109.408 1 172.71 ? C1' ADP 902 D 1 
HETATM 18 N N9 ADP . . . U 5 174.882 147.376 109.058 1 172.71 ? N9 ADP 902 D 1 
HETATM 19 C C8 ADP . . . U 5 175.917 146.734 109.685 1 172.71 ? C8 ADP 902 D 1 
HETATM 20 N N7 ADP . . . U 5 176.228 145.575 109.157 1 172.71 ? N7 ADP 902 D 1 
HETATM 21 C C5 ADP . . . U 5 175.328 145.439 108.111 1 172.71 ? C5 ADP 902 D 1 
HETATM 22 C C6 ADP . . . U 5 175.126 144.424 107.156 1 172.71 ? C6 ADP 902 D 1 
HETATM 23 N N6 ADP . . . U 5 175.85 143.301 107.1 1 172.71 ? N6 ADP 902 D 1 
HETATM 24 N N1 ADP . . . U 5 174.141 144.6 106.248 1 172.71 ? N1 ADP 902 D 1 
HETATM 25 C C2 ADP . . . U 5 173.412 145.719 106.3 1 172.71 ? C2 ADP 902 D 1 
HETATM 26 N N3 ADP . . . U 5 173.512 146.744 107.15 1 172.71 ? N3 ADP 902 D 1 
HETATM 27 C C4 ADP . . . U 5 174.493 146.544 108.036 1 172.71 ? C4 ADP 902 D 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          23 
_model_server_stats.element_count           27 
#