data_8UA0 # _model_server_result.job_id VAo5JBfcYdnf8fJQJ8LDUQ _model_server_result.datetime_utc '2024-11-06 10:27:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ua0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":902}' # _entry.id 8UA0 # _exptl.entry_id 8UA0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 T N N ? 5 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 262 A THR 262 1_555 I MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? metalc ? metalc2 A OG1 THR 535 A THR 535 1_555 K MG MG . A MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc3 H O2B 08T . A 08T 901 1_555 I MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc4 J O1A 08T . A 08T 903 1_555 K MG MG . A MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc5 J O2B 08T . A 08T 903 1_555 K MG MG . A MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc6 J O3A 08T . A 08T 903 1_555 K MG MG . A MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc7 J O3B 08T . A 08T 903 1_555 K MG MG . A MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.829 ? metalc ? metalc8 B OG1 THR 262 B THR 262 1_555 M MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc9 B OG1 THR 535 B THR 535 1_555 O MG MG . B MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc10 L O2B 08T . B 08T 901 1_555 M MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc11 L O3A 08T . B 08T 901 1_555 M MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? metalc ? metalc12 L O3B 08T . B 08T 901 1_555 M MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc13 N O2B 08T . B 08T 903 1_555 O MG MG . B MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc14 C OG1 THR 262 C THR 262 1_555 Q MG MG . C MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.813 ? metalc ? metalc15 C OG1 THR 535 C THR 535 1_555 S MG MG . C MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc16 P O2B 08T . C 08T 901 1_555 Q MG MG . C MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc17 R O2B 08T . C 08T 903 1_555 S MG MG . C MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc18 F OG1 THR 535 F THR 535 1_555 W MG MG . F MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc19 V O2B 08T . F 08T 901 1_555 W MG MG . F MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 48 n n PB O2B ADP sing 49 n n PB O3B ADP sing 50 n n PB O3A ADP sing 51 n n O2B HOB2 ADP sing 52 n n O3B HOB3 ADP sing 53 n n PA O1A ADP doub 54 n n PA O2A ADP sing 55 n n PA O3A ADP sing 56 n n PA O5' ADP sing 57 n n O2A HOA2 ADP sing 58 n n O5' C5' ADP sing 59 n n C5' C4' ADP sing 60 n n C5' "H5'1" ADP sing 61 n n C5' "H5'2" ADP sing 62 n n C4' O4' ADP sing 63 n n C4' C3' ADP sing 64 n n C4' H4' ADP sing 65 n n O4' C1' ADP sing 66 n n C3' O3' ADP sing 67 n n C3' C2' ADP sing 68 n n C3' H3' ADP sing 69 n n O3' HO3' ADP sing 70 n n C2' O2' ADP sing 71 n n C2' C1' ADP sing 72 n n C2' H2' ADP sing 73 n n O2' HO2' ADP sing 74 n n C1' N9 ADP sing 75 n n C1' H1' ADP sing 76 n n N9 C8 ADP sing 77 n y N9 C4 ADP sing 78 n y C8 N7 ADP doub 79 n y C8 H8 ADP sing 80 n n N7 C5 ADP sing 81 n y C5 C6 ADP sing 82 n y C5 C4 ADP doub 83 n y C6 N6 ADP sing 84 n n C6 N1 ADP doub 85 n y N6 HN61 ADP sing 86 n n N6 HN62 ADP sing 87 n n N1 C2 ADP sing 88 n y C2 N3 ADP doub 89 n y C2 H2 ADP sing 90 n n N3 C4 ADP sing 91 n y # _atom_sites.entry_id 8UA0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 3 08T A 1 901 901 08T ADP . I 4 MG A 1 902 903 MG MG . J 3 08T A 1 903 904 08T ADP . K 4 MG A 1 904 906 MG MG . L 3 08T B 1 901 901 08T ADP . M 4 MG B 1 902 903 MG MG . N 3 08T B 1 903 904 08T ADP . O 4 MG B 1 904 906 MG MG . P 3 08T C 1 901 901 08T ADP . Q 4 MG C 1 902 903 MG MG . R 3 08T C 1 903 904 08T ADP . S 4 MG C 1 904 906 MG MG . T 5 ADP D 1 901 901 ADP ADP . U 5 ADP D 1 902 904 ADP ADP . V 3 08T F 1 901 904 08T ADP . W 4 MG F 1 902 906 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . U 5 176.73 146.415 115.91 1 156.11 ? PB ADP 902 D 1 HETATM 2 O O1B ADP . . . U 5 177.302 145.253 115.09 1 156.11 ? O1B ADP 902 D 1 HETATM 3 O O2B ADP . . . U 5 175.942 145.931 117.078 1 156.11 ? O2B ADP 902 D 1 HETATM 4 O O3B ADP . . . U 5 177.776 147.447 116.329 1 156.11 ? O3B ADP 902 D 1 HETATM 5 P PA ADP . . . U 5 174.218 147.342 114.573 1 156.11 ? PA ADP 902 D 1 HETATM 6 O O1A ADP . . . U 5 173.682 145.995 114.29 1 156.11 ? O1A ADP 902 D 1 HETATM 7 O O2A ADP . . . U 5 173.64 148.162 115.724 1 156.11 ? O2A ADP 902 D 1 HETATM 8 O O3A ADP . . . U 5 175.768 147.192 114.893 1 156.11 ? O3A ADP 902 D 1 HETATM 9 O O5' ADP . . . U 5 174.184 148.222 113.262 1 156.11 ? O5' ADP 902 D 1 HETATM 10 C C5' ADP . . . U 5 173.573 149.529 113.264 1 156.11 ? C5' ADP 902 D 1 HETATM 11 C C4' ADP . . . U 5 173.215 149.983 111.87 1 156.11 ? C4' ADP 902 D 1 HETATM 12 O O4' ADP . . . U 5 174.239 149.584 110.939 1 156.11 ? O4' ADP 902 D 1 HETATM 13 C C3' ADP . . . U 5 171.891 149.396 111.384 1 156.11 ? C3' ADP 902 D 1 HETATM 14 O O3' ADP . . . U 5 170.913 150.42 111.235 1 156.11 ? O3' ADP 902 D 1 HETATM 15 C C2' ADP . . . U 5 172.208 148.732 110.035 1 156.11 ? C2' ADP 902 D 1 HETATM 16 O O2' ADP . . . U 5 171.433 149.285 108.975 1 156.11 ? O2' ADP 902 D 1 HETATM 17 C C1' ADP . . . U 5 173.695 148.999 109.775 1 156.11 ? C1' ADP 902 D 1 HETATM 18 N N9 ADP . . . U 5 174.403 147.751 109.518 1 156.11 ? N9 ADP 902 D 1 HETATM 19 C C8 ADP . . . U 5 175.431 147.217 110.249 1 156.11 ? C8 ADP 902 D 1 HETATM 20 N N7 ADP . . . U 5 175.883 146.078 109.784 1 156.11 ? N7 ADP 902 D 1 HETATM 21 C C5 ADP . . . U 5 175.096 145.844 108.667 1 156.11 ? C5 ADP 902 D 1 HETATM 22 C C6 ADP . . . U 5 175.069 144.796 107.725 1 156.11 ? C6 ADP 902 D 1 HETATM 23 N N6 ADP . . . U 5 175.889 143.741 107.763 1 156.11 ? N6 ADP 902 D 1 HETATM 24 N N1 ADP . . . U 5 174.159 144.868 106.729 1 156.11 ? N1 ADP 902 D 1 HETATM 25 C C2 ADP . . . U 5 173.337 145.921 106.684 1 156.11 ? C2 ADP 902 D 1 HETATM 26 N N3 ADP . . . U 5 173.27 146.966 107.514 1 156.11 ? N3 ADP 902 D 1 HETATM 27 C C4 ADP . . . U 5 174.179 146.868 108.49 1 156.11 ? C4 ADP 902 D 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 27 #