data_8UAE
#
_model_server_result.job_id            -NQ0TZKdRIYYaYDoW0Cxyw 
_model_server_result.datetime_utc      '2024-11-14 18:55:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8uae 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"MA","auth_seq_id":701}' 
#
_entry.id    8UAE 
#
_exptl.entry_id    8UAE 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              523.247 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8UAE 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8UAE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octadecameric 
_pdbx_struct_assembly.oligomeric_count      18 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 EA N N 
? 4 GA N N 
? 4 IA N N 
? 4 KA N N 
? 4 MA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 M OG SER 184 M SER 184 1_555 FA MG MG . M MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? 
metalc ? metalc2 M OE1 GLU 211 M GLU 211 1_555 FA MG MG . M MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.836 ? 
metalc ? metalc3 M OE2 GLU 211 M GLU 211 1_555 FA MG MG . M MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.896 ? 
metalc ? metalc4 N OG SER 184 N SER 184 1_555 HA MG MG . N MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.84 ? 
metalc ? metalc5 N OE2 GLU 211 N GLU 211 1_555 HA MG MG . N MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? 
metalc ? metalc6 GA O2G AGS . N AGS 701 1_555 HA MG MG . N MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? 
metalc ? metalc7 KA O2G AGS . P AGS 701 1_555 LA MG MG . P MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? 
#
_chem_comp.formula           'C10 H16 N5 O12 P3 S' 
_chem_comp.formula_weight    523.247 
_chem_comp.id                AGS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "ATP-GAMMA-S;ADENOSINE 5'-(3-THIOTRIPHOSPHATE);ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE);ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG S1G AGS doub 1 n n 
PG O2G AGS sing 2 n n 
PG O3G AGS sing 3 n n 
PG O3B AGS sing 4 n n 
PB O1B AGS doub 5 n n 
PB O2B AGS sing 6 n n 
PB O3B AGS sing 7 n n 
PB O3A AGS sing 8 n n 
PA O1A AGS doub 9 n n 
PA O2A AGS sing 10 n n 
PA O3A AGS sing 11 n n 
PA O5' AGS sing 12 n n 
O5' C5' AGS sing 13 n n 
C5' C4' AGS sing 14 n n 
C4' O4' AGS sing 15 n n 
C4' C3' AGS sing 16 n n 
O4' C1' AGS sing 17 n n 
C3' O3' AGS sing 18 n n 
C3' C2' AGS sing 19 n n 
C2' O2' AGS sing 20 n n 
C2' C1' AGS sing 21 n n 
C1' N9 AGS sing 22 n n 
N9 C8 AGS sing 23 n y 
N9 C4 AGS sing 24 n y 
C8 N7 AGS doub 25 n y 
N7 C5 AGS sing 26 n y 
C5 C6 AGS sing 27 n y 
C5 C4 AGS doub 28 n y 
C6 N6 AGS sing 29 n n 
C6 N1 AGS doub 30 n y 
N1 C2 AGS sing 31 n y 
C2 N3 AGS doub 32 n y 
N3 C4 AGS sing 33 n y 
O2G HOG2 AGS sing 34 n n 
O3G H21 AGS sing 35 n n 
O2B HOB2 AGS sing 36 n n 
O2A HOA2 AGS sing 37 n n 
C5' "H5'1" AGS sing 38 n n 
C5' "H5'2" AGS sing 39 n n 
C4' H4' AGS sing 40 n n 
C3' H3' AGS sing 41 n n 
O3' HO3' AGS sing 42 n n 
C2' H2' AGS sing 43 n n 
O2' HO2' AGS sing 44 n n 
C1' H1' AGS sing 45 n n 
C8 H8 AGS sing 46 n n 
N6 HN61 AGS sing 47 n n 
N6 HN62 AGS sing 48 n n 
C2 H2 AGS sing 49 n n 
#
_atom_sites.entry_id                     8UAE 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
S 3 AR6 A 1 501 501 AR6 AR6 . 
T 3 AR6 B 1 501 501 AR6 AR6 . 
U 3 AR6 C 1 501 501 AR6 AR6 . 
V 3 AR6 D 1 501 501 AR6 AR6 . 
W 3 AR6 E 1 501 501 AR6 AR6 . 
X 3 AR6 F 1 501 501 AR6 AR6 . 
Y 3 AR6 G 1 501 501 AR6 AR6 . 
Z 3 AR6 H 1 501 501 AR6 AR6 . 
AA 3 AR6 I 1 501 501 AR6 AR6 . 
BA 3 AR6 J 1 501 501 AR6 AR6 . 
CA 3 AR6 K 1 501 501 AR6 AR6 . 
DA 3 AR6 L 1 501 501 AR6 AR6 . 
EA 4 AGS M 1 701 701 AGS LIG . 
FA 5 MG M 1 702 703 MG MG . 
GA 4 AGS N 1 701 701 AGS LIG . 
HA 5 MG N 1 702 704 MG MG . 
IA 4 AGS O 1 701 701 AGS LIG . 
JA 5 MG O 1 702 705 MG MG . 
KA 4 AGS P 1 701 701 AGS LIG . 
LA 5 MG P 1 702 702 MG MG . 
MA 4 AGS Q 1 701 701 AGS LIG . 
NA 5 MG Q 1 702 706 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG AGS . . . MA 4 152.64 146.576 231.158 1 93.15 ? PG AGS 701 Q 1 
HETATM 2 S S1G AGS . . . MA 4 152.624 147.895 232.603 1 96.98 ? S1G AGS 701 Q 1 
HETATM 3 O O2G AGS . . . MA 4 151.134 145.856 231.04 1 82.8 ? O2G AGS 701 Q 1 
HETATM 4 O O3G AGS . . . MA 4 153.02 147.319 229.708 1 86.86 ? O3G AGS 701 Q 1 
HETATM 5 P PB AGS . . . MA 4 154.981 144.97 230.527 1 75.63 ? PB AGS 701 Q 1 
HETATM 6 O O1B AGS . . . MA 4 155.847 146.139 230.22 1 83.84 -1 O1B AGS 701 Q 1 
HETATM 7 O O2B AGS . . . MA 4 155.787 143.912 231.209 1 75.14 ? O2B AGS 701 Q 1 
HETATM 8 O O3B AGS . . . MA 4 153.772 145.413 231.513 1 79.88 ? O3B AGS 701 Q 1 
HETATM 9 P PA AGS . . . MA 4 154.223 142.683 228.754 1 87.15 ? PA AGS 701 Q 1 
HETATM 10 O O1A AGS . . . MA 4 155.512 142.203 228.16 1 82.96 -1 O1A AGS 701 Q 1 
HETATM 11 O O2A AGS . . . MA 4 153.948 141.936 230.037 1 88.95 ? O2A AGS 701 Q 1 
HETATM 12 O O3A AGS . . . MA 4 154.34 144.351 229.08 1 73.21 ? O3A AGS 701 Q 1 
HETATM 13 O O5' AGS . . . MA 4 153.007 142.423 227.697 1 83.06 ? O5' AGS 701 Q 1 
HETATM 14 C C5' AGS . . . MA 4 153.332 141.986 226.397 1 78.63 ? C5' AGS 701 Q 1 
HETATM 15 C C4' AGS . . . MA 4 152.711 140.581 226.184 1 78.65 ? C4' AGS 701 Q 1 
HETATM 16 O O4' AGS . . . MA 4 152.866 140.196 224.932 1 79.78 ? O4' AGS 701 Q 1 
HETATM 17 C C3' AGS . . . MA 4 153.489 139.482 227.082 1 81.94 ? C3' AGS 701 Q 1 
HETATM 18 O O3' AGS . . . MA 4 154.863 139.785 227.116 1 83.57 ? O3' AGS 701 Q 1 
HETATM 19 C C2' AGS . . . MA 4 153.302 138.348 226.501 1 81.61 ? C2' AGS 701 Q 1 
HETATM 20 O O2' AGS . . . MA 4 152.169 137.676 227.075 1 86.43 ? O2' AGS 701 Q 1 
HETATM 21 C C1' AGS . . . MA 4 153.018 138.686 224.992 1 81.65 ? C1' AGS 701 Q 1 
HETATM 22 N N9 AGS . . . MA 4 154.104 138.279 224.049 1 86.94 ? N9 AGS 701 Q 1 
HETATM 23 C C8 AGS . . . MA 4 154.121 137.15 223.33 1 87.21 ? C8 AGS 701 Q 1 
HETATM 24 N N7 AGS . . . MA 4 155.252 137.134 222.602 1 88.6 ? N7 AGS 701 Q 1 
HETATM 25 C C5 AGS . . . MA 4 155.953 138.273 222.87 1 85.26 ? C5 AGS 701 Q 1 
HETATM 26 C C6 AGS . . . MA 4 157.232 138.812 222.396 1 79.62 ? C6 AGS 701 Q 1 
HETATM 27 N N6 AGS . . . MA 4 158.038 138.089 221.43 1 78.54 ? N6 AGS 701 Q 1 
HETATM 28 N N1 AGS . . . MA 4 157.63 139.966 222.868 1 79.83 ? N1 AGS 701 Q 1 
HETATM 29 C C2 AGS . . . MA 4 156.916 140.643 223.745 1 81.67 ? C2 AGS 701 Q 1 
HETATM 30 N N3 AGS . . . MA 4 155.722 140.17 224.207 1 80.71 ? N3 AGS 701 Q 1 
HETATM 31 C C4 AGS . . . MA 4 155.238 138.997 223.781 1 84.26 ? C4 AGS 701 Q 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    110 
_model_server_stats.query_time_ms           354 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           31 
#