data_8UAF # _model_server_result.job_id egNs3fDjGaSYaW_6J4I2tQ _model_server_result.datetime_utc '2024-10-11 01:26:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8uaf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":501}' # _entry.id 8UAF # _exptl.entry_id 8UAF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 663.425 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UAF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UAF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 T N N ? 4 U N N ? 4 W N N ? 4 X N N ? 4 Y N N ? 4 Z N N ? 4 BA N N ? 4 DA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 M OG SER 184 M SER 184 1_555 FA MG MG . M MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? metalc ? metalc2 M OE1 GLU 211 M GLU 211 1_555 FA MG MG . M MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc3 N OE2 GLU 477 N GLU 477 1_555 HA MG MG . N MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc4 O OE2 GLU 477 O GLU 477 1_555 JA MG MG . O MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.959 ? metalc ? metalc5 P OG SER 184 P SER 184 1_555 KA MG MG . P MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.721 ? metalc ? metalc6 P OE2 GLU 477 P GLU 477 1_555 KA MG MG . P MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc7 KA MG MG . P MG 701 1_555 LA O1B ADP . P ADP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.873 ? metalc ? metalc8 Q OG SER 184 Q SER 184 1_555 NA MG MG . Q MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 341 n n PA O2A NAD sing 342 n n PA O5B NAD sing 343 n n PA O3 NAD sing 344 n n O2A HOA2 NAD sing 345 n n O5B C5B NAD sing 346 n n C5B C4B NAD sing 347 n n C5B H51A NAD sing 348 n n C5B H52A NAD sing 349 n n C4B O4B NAD sing 350 n n C4B C3B NAD sing 351 n n C4B H4B NAD sing 352 n n O4B C1B NAD sing 353 n n C3B O3B NAD sing 354 n n C3B C2B NAD sing 355 n n C3B H3B NAD sing 356 n n O3B HO3A NAD sing 357 n n C2B O2B NAD sing 358 n n C2B C1B NAD sing 359 n n C2B H2B NAD sing 360 n n O2B HO2A NAD sing 361 n n C1B N9A NAD sing 362 n n C1B H1B NAD sing 363 n n N9A C8A NAD sing 364 n y N9A C4A NAD sing 365 n y C8A N7A NAD doub 366 n y C8A H8A NAD sing 367 n n N7A C5A NAD sing 368 n y C5A C6A NAD sing 369 n y C5A C4A NAD doub 370 n y C6A N6A NAD sing 371 n n C6A N1A NAD doub 372 n y N6A H61A NAD sing 373 n n N6A H62A NAD sing 374 n n N1A C2A NAD sing 375 n y C2A N3A NAD doub 376 n y C2A H2A NAD sing 377 n n N3A C4A NAD sing 378 n y O3 PN NAD sing 379 n n PN O1N NAD doub 380 n n PN O2N NAD sing 381 n n PN O5D NAD sing 382 n n O5D C5D NAD sing 383 n n C5D C4D NAD sing 384 n n C5D H51N NAD sing 385 n n C5D H52N NAD sing 386 n n C4D O4D NAD sing 387 n n C4D C3D NAD sing 388 n n C4D H4D NAD sing 389 n n O4D C1D NAD sing 390 n n C3D O3D NAD sing 391 n n C3D C2D NAD sing 392 n n C3D H3D NAD sing 393 n n O3D HO3N NAD sing 394 n n C2D O2D NAD sing 395 n n C2D C1D NAD sing 396 n n C2D H2D NAD sing 397 n n O2D HO2N NAD sing 398 n n C1D N1N NAD sing 399 n n C1D H1D NAD sing 400 n n N1N C2N NAD sing 401 n y N1N C6N NAD doub 402 n y C2N C3N NAD doub 403 n y C2N H2N NAD sing 404 n n C3N C7N NAD sing 405 n n C3N C4N NAD sing 406 n y C7N O7N NAD doub 407 n n C7N N7N NAD sing 408 n n N7N H71N NAD sing 409 n n N7N H72N NAD sing 410 n n C4N C5N NAD doub 411 n y C4N H4N NAD sing 412 n n C5N C6N NAD sing 413 n y C5N H5N NAD sing 414 n n C6N H6N NAD sing 415 n n # _atom_sites.entry_id 8UAF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code S 3 AR6 A 1 501 501 AR6 AR6 . T 4 NAD B 1 501 401 NAD LIG . U 4 NAD C 1 501 501 NAD LIG . V 3 AR6 D 1 501 401 AR6 AR6 . W 4 NAD E 1 501 501 NAD LIG . X 4 NAD F 1 501 401 NAD LIG . Y 4 NAD G 1 501 501 NAD LIG . Z 4 NAD H 1 501 401 NAD LIG . AA 3 AR6 I 1 501 501 AR6 AR6 . BA 4 NAD J 1 501 401 NAD LIG . CA 3 AR6 K 1 501 501 AR6 AR6 . DA 4 NAD L 1 501 401 NAD LIG . EA 5 ADP M 1 701 701 ADP ADP . FA 6 MG M 1 702 703 MG MG . GA 5 ADP N 1 701 701 ADP ADP . HA 6 MG N 1 702 704 MG MG . IA 5 ADP O 1 701 701 ADP ADP . JA 6 MG O 1 702 705 MG MG . KA 6 MG P 1 701 702 MG MG . LA 5 ADP P 1 702 701 ADP ADP . MA 5 ADP Q 1 701 701 ADP ADP . NA 6 MG Q 1 702 706 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . Y 4 222.352 124.692 190.267 1 121.48 ? PA NAD 501 G 1 HETATM 2 O O1A NAD . . . Y 4 222.851 123.392 189.782 1 113.27 -1 O1A NAD 501 G 1 HETATM 3 O O2A NAD . . . Y 4 223.339 125.571 191.008 1 117.31 ? O2A NAD 501 G 1 HETATM 4 O O5B NAD . . . Y 4 221.954 125.693 188.862 1 115.08 ? O5B NAD 501 G 1 HETATM 5 C C5B NAD . . . Y 4 222.607 126.847 188.555 1 113.89 ? C5B NAD 501 G 1 HETATM 6 C C4B NAD . . . Y 4 223.764 126.581 187.556 1 114.99 ? C4B NAD 501 G 1 HETATM 7 O O4B NAD . . . Y 4 224.239 127.746 186.856 1 111.1 ? O4B NAD 501 G 1 HETATM 8 C C3B NAD . . . Y 4 224.987 126.103 188.335 1 115.61 ? C3B NAD 501 G 1 HETATM 9 O O3B NAD . . . Y 4 225.272 126.972 189.413 1 115.99 ? O3B NAD 501 G 1 HETATM 10 C C2B NAD . . . Y 4 226.018 126.292 187.214 1 114.94 ? C2B NAD 501 G 1 HETATM 11 O O2B NAD . . . Y 4 225.929 125.213 186.343 1 115.81 ? O2B NAD 501 G 1 HETATM 12 C C1B NAD . . . Y 4 225.573 127.642 186.495 1 110.82 ? C1B NAD 501 G 1 HETATM 13 N N9A NAD . . . Y 4 226.379 128.815 186.885 1 107.53 ? N9A NAD 501 G 1 HETATM 14 C C8A NAD . . . Y 4 227.605 128.741 187.585 1 109.13 ? C8A NAD 501 G 1 HETATM 15 N N7A NAD . . . Y 4 228.178 129.92 187.82 1 108.63 ? N7A NAD 501 G 1 HETATM 16 C C5A NAD . . . Y 4 227.328 130.894 187.273 1 109.53 ? C5A NAD 501 G 1 HETATM 17 C C6A NAD . . . Y 4 227.367 132.334 187.19 1 110.43 ? C6A NAD 501 G 1 HETATM 18 N N6A NAD . . . Y 4 228.397 133.134 187.722 1 108.78 ? N6A NAD 501 G 1 HETATM 19 N N1A NAD . . . Y 4 226.342 132.978 186.566 1 112.52 ? N1A NAD 501 G 1 HETATM 20 C C2A NAD . . . Y 4 225.327 132.202 186.044 1 110.44 ? C2A NAD 501 G 1 HETATM 21 N N3A NAD . . . Y 4 225.18 130.866 186.053 1 106.25 ? N3A NAD 501 G 1 HETATM 22 C C4A NAD . . . Y 4 226.207 130.225 186.68 1 108 ? C4A NAD 501 G 1 HETATM 23 O O3 NAD . . . Y 4 220.952 124.376 191.142 1 115.4 ? O3 NAD 501 G 1 HETATM 24 P PN NAD . . . Y 4 219.87 125.408 191.749 1 124.27 ? PN NAD 501 G 1 HETATM 25 O O1N NAD . . . Y 4 220.463 126.535 192.546 1 116.82 -1 O1N NAD 501 G 1 HETATM 26 O O2N NAD . . . Y 4 218.755 125.686 190.818 1 115.81 ? O2N NAD 501 G 1 HETATM 27 O O5D NAD . . . Y 4 219.01 124.589 193.102 1 113.25 ? O5D NAD 501 G 1 HETATM 28 C C5D NAD . . . Y 4 218.091 123.661 192.892 1 109.18 ? C5D NAD 501 G 1 HETATM 29 C C4D NAD . . . Y 4 218.283 122.518 193.957 1 110.05 ? C4D NAD 501 G 1 HETATM 30 O O4D NAD . . . Y 4 217.161 122.254 194.792 1 110.61 ? O4D NAD 501 G 1 HETATM 31 C C3D NAD . . . Y 4 218.463 121.188 193.209 1 111.36 ? C3D NAD 501 G 1 HETATM 32 O O3D NAD . . . Y 4 217.414 121.071 192.277 1 108.66 ? O3D NAD 501 G 1 HETATM 33 C C2D NAD . . . Y 4 218.249 120.231 194.412 1 113.07 ? C2D NAD 501 G 1 HETATM 34 O O2D NAD . . . Y 4 219.475 119.949 194.993 1 114.49 ? O2D NAD 501 G 1 HETATM 35 C C1D NAD . . . Y 4 217.321 121.046 195.423 1 110.84 ? C1D NAD 501 G 1 HETATM 36 N N1N NAD . . . Y 4 217.945 121.295 196.936 1 110.94 ? N1N NAD 501 G 1 HETATM 37 C C2N NAD . . . Y 4 217.843 122.517 197.55 1 112.02 ? C2N NAD 501 G 1 HETATM 38 C C3N NAD . . . Y 4 218.352 122.801 198.853 1 113.16 ? C3N NAD 501 G 1 HETATM 39 C C7N NAD . . . Y 4 218.195 124.236 199.476 1 113.11 ? C7N NAD 501 G 1 HETATM 40 O O7N NAD . . . Y 4 218.575 125.205 198.873 1 112.41 ? O7N NAD 501 G 1 HETATM 41 N N7N NAD . . . Y 4 217.588 124.413 200.744 1 113.33 ? N7N NAD 501 G 1 HETATM 42 C C4N NAD . . . Y 4 218.995 121.736 199.503 1 112.92 ? C4N NAD 501 G 1 HETATM 43 C C5N NAD . . . Y 4 219.106 120.467 198.886 1 112.6 ? C5N NAD 501 G 1 HETATM 44 C C6N NAD . . . Y 4 218.583 120.263 197.609 1 112.28 ? C6N NAD 501 G 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 84 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #