data_8UAF
#
_model_server_result.job_id            oZyLJNBsFVMozRT0WaA85A 
_model_server_result.datetime_utc      '2024-10-11 01:28:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8uaf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"EA","auth_seq_id":701}' 
#
_entry.id    8UAF 
#
_exptl.entry_id    8UAF 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8UAF 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8UAF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octadecameric 
_pdbx_struct_assembly.oligomeric_count      18 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 EA N N 
? 5 GA N N 
? 5 IA N N 
? 5 LA N N 
? 5 MA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 M OG SER 184 M SER 184 1_555 FA MG MG . M MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? 
metalc ? metalc2 M OE1 GLU 211 M GLU 211 1_555 FA MG MG . M MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? 
metalc ? metalc3 N OE2 GLU 477 N GLU 477 1_555 HA MG MG . N MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? 
metalc ? metalc4 O OE2 GLU 477 O GLU 477 1_555 JA MG MG . O MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.959 ? 
metalc ? metalc5 P OG SER 184 P SER 184 1_555 KA MG MG . P MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.721 ? 
metalc ? metalc6 P OE2 GLU 477 P GLU 477 1_555 KA MG MG . P MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? 
metalc ? metalc7 KA MG MG . P MG 701 1_555 LA O1B ADP . P ADP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.873 ? 
metalc ? metalc8 Q OG SER 184 Q SER 184 1_555 NA MG MG . Q MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     8UAF 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
S 3 AR6 A 1 501 501 AR6 AR6 . 
T 4 NAD B 1 501 401 NAD LIG . 
U 4 NAD C 1 501 501 NAD LIG . 
V 3 AR6 D 1 501 401 AR6 AR6 . 
W 4 NAD E 1 501 501 NAD LIG . 
X 4 NAD F 1 501 401 NAD LIG . 
Y 4 NAD G 1 501 501 NAD LIG . 
Z 4 NAD H 1 501 401 NAD LIG . 
AA 3 AR6 I 1 501 501 AR6 AR6 . 
BA 4 NAD J 1 501 401 NAD LIG . 
CA 3 AR6 K 1 501 501 AR6 AR6 . 
DA 4 NAD L 1 501 401 NAD LIG . 
EA 5 ADP M 1 701 701 ADP ADP . 
FA 6 MG M 1 702 703 MG MG . 
GA 5 ADP N 1 701 701 ADP ADP . 
HA 6 MG N 1 702 704 MG MG . 
IA 5 ADP O 1 701 701 ADP ADP . 
JA 6 MG O 1 702 705 MG MG . 
KA 6 MG P 1 701 702 MG MG . 
LA 5 ADP P 1 702 701 ADP ADP . 
MA 5 ADP Q 1 701 701 ADP ADP . 
NA 6 MG Q 1 702 706 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . EA 5 204.297 215.758 154.202 1 114.75 ? PB ADP 701 M 1 
HETATM 2 O O1B ADP . . . EA 5 203.609 216.305 152.985 1 108.81 -1 O1B ADP 701 M 1 
HETATM 3 O O2B ADP . . . EA 5 203.852 214.373 154.549 1 110.52 ? O2B ADP 701 M 1 
HETATM 4 O O3B ADP . . . EA 5 205.783 215.882 154.128 1 116.95 ? O3B ADP 701 M 1 
HETATM 5 P PA ADP . . . EA 5 204.411 218.151 155.777 1 114.99 ? PA ADP 701 M 1 
HETATM 6 O O1A ADP . . . EA 5 204.204 219.055 154.611 1 108.92 ? O1A ADP 701 M 1 
HETATM 7 O O2A ADP . . . EA 5 205.8 217.988 156.298 1 110 -1 O2A ADP 701 M 1 
HETATM 8 O O3A ADP . . . EA 5 203.856 216.706 155.407 1 115.54 ? O3A ADP 701 M 1 
HETATM 9 O O5' ADP . . . EA 5 203.441 218.583 156.975 1 114.11 ? O5' ADP 701 M 1 
HETATM 10 C C5' ADP . . . EA 5 202.269 219.404 156.756 1 113.01 ? C5' ADP 701 M 1 
HETATM 11 C C4' ADP . . . EA 5 202.096 220.318 157.942 1 114.22 ? C4' ADP 701 M 1 
HETATM 12 O O4' ADP . . . EA 5 202.314 219.55 159.153 1 113.09 ? O4' ADP 701 M 1 
HETATM 13 C C3' ADP . . . EA 5 203.071 221.503 158.032 1 115.39 ? C3' ADP 701 M 1 
HETATM 14 O O3' ADP . . . EA 5 202.447 222.671 158.548 1 114.66 ? O3' ADP 701 M 1 
HETATM 15 C C2' ADP . . . EA 5 204.109 220.996 159.031 1 115.47 ? C2' ADP 701 M 1 
HETATM 16 O O2' ADP . . . EA 5 204.824 222.034 159.663 1 115.53 ? O2' ADP 701 M 1 
HETATM 17 C C1' ADP . . . EA 5 203.191 220.258 159.993 1 114.24 ? C1' ADP 701 M 1 
HETATM 18 N N9 ADP . . . EA 5 203.884 219.317 160.859 1 115.34 ? N9 ADP 701 M 1 
HETATM 19 C C8 ADP . . . EA 5 204.265 218.044 160.532 1 113.48 ? C8 ADP 701 M 1 
HETATM 20 N N7 ADP . . . EA 5 204.879 217.42 161.503 1 114.77 ? N7 ADP 701 M 1 
HETATM 21 C C5 ADP . . . EA 5 204.902 218.338 162.54 1 116.71 ? C5 ADP 701 M 1 
HETATM 22 C C6 ADP . . . EA 5 205.421 218.274 163.846 1 115.74 ? C6 ADP 701 M 1 
HETATM 23 N N6 ADP . . . EA 5 206.034 217.205 164.347 1 114.48 ? N6 ADP 701 M 1 
HETATM 24 N N1 ADP . . . EA 5 205.278 219.37 164.627 1 114.53 ? N1 ADP 701 M 1 
HETATM 25 C C2 ADP . . . EA 5 204.659 220.44 164.116 1 112.6 ? C2 ADP 701 M 1 
HETATM 26 N N3 ADP . . . EA 5 204.135 220.612 162.907 1 113.54 ? N3 ADP 701 M 1 
HETATM 27 C C4 ADP . . . EA 5 204.29 219.513 162.156 1 115.66 ? C4 ADP 701 M 1 
#
_model_server_stats.io_time_ms              45 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    90 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#