data_8UAF # _model_server_result.job_id HiKP1fWibdFhHNVJKotL2A _model_server_result.datetime_utc '2024-10-11 01:19:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8uaf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"LA","auth_seq_id":702}' # _entry.id 8UAF # _exptl.entry_id 8UAF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8UAF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UAF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 EA N N ? 5 GA N N ? 5 IA N N ? 5 LA N N ? 5 MA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 M OG SER 184 M SER 184 1_555 FA MG MG . M MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? metalc ? metalc2 M OE1 GLU 211 M GLU 211 1_555 FA MG MG . M MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc3 N OE2 GLU 477 N GLU 477 1_555 HA MG MG . N MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc4 O OE2 GLU 477 O GLU 477 1_555 JA MG MG . O MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.959 ? metalc ? metalc5 P OG SER 184 P SER 184 1_555 KA MG MG . P MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.721 ? metalc ? metalc6 P OE2 GLU 477 P GLU 477 1_555 KA MG MG . P MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc7 KA MG MG . P MG 701 1_555 LA O1B ADP . P ADP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.873 ? metalc ? metalc8 Q OG SER 184 Q SER 184 1_555 NA MG MG . Q MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 8UAF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code S 3 AR6 A 1 501 501 AR6 AR6 . T 4 NAD B 1 501 401 NAD LIG . U 4 NAD C 1 501 501 NAD LIG . V 3 AR6 D 1 501 401 AR6 AR6 . W 4 NAD E 1 501 501 NAD LIG . X 4 NAD F 1 501 401 NAD LIG . Y 4 NAD G 1 501 501 NAD LIG . Z 4 NAD H 1 501 401 NAD LIG . AA 3 AR6 I 1 501 501 AR6 AR6 . BA 4 NAD J 1 501 401 NAD LIG . CA 3 AR6 K 1 501 501 AR6 AR6 . DA 4 NAD L 1 501 401 NAD LIG . EA 5 ADP M 1 701 701 ADP ADP . FA 6 MG M 1 702 703 MG MG . GA 5 ADP N 1 701 701 ADP ADP . HA 6 MG N 1 702 704 MG MG . IA 5 ADP O 1 701 701 ADP ADP . JA 6 MG O 1 702 705 MG MG . KA 6 MG P 1 701 702 MG MG . LA 5 ADP P 1 702 701 ADP ADP . MA 5 ADP Q 1 701 701 ADP ADP . NA 6 MG Q 1 702 706 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . LA 5 188.188 149.611 122.524 1 68.86 ? PB ADP 702 P 1 HETATM 2 O O1B ADP . . . LA 5 187.347 150.032 121.344 1 61.38 -1 O1B ADP 702 P 1 HETATM 3 O O2B ADP . . . LA 5 187.817 150.257 123.836 1 70.08 ? O2B ADP 702 P 1 HETATM 4 O O3B ADP . . . LA 5 189.67 149.593 122.244 1 72.48 ? O3B ADP 702 P 1 HETATM 5 P PA ADP . . . LA 5 186.303 147.591 123.027 1 75.42 ? PA ADP 702 P 1 HETATM 6 O O1A ADP . . . LA 5 185.82 146.805 121.832 1 77.98 -1 O1A ADP 702 P 1 HETATM 7 O O2A ADP . . . LA 5 185.521 148.8 123.479 1 76.81 ? O2A ADP 702 P 1 HETATM 8 O O3A ADP . . . LA 5 187.813 148.057 122.714 1 68.92 ? O3A ADP 702 P 1 HETATM 9 O O5' ADP . . . LA 5 186.456 146.555 124.249 1 56.05 ? O5' ADP 702 P 1 HETATM 10 C C5' ADP . . . LA 5 187.532 146.644 125.176 1 58.18 ? C5' ADP 702 P 1 HETATM 11 C C4' ADP . . . LA 5 187.566 145.37 126.008 1 65.22 ? C4' ADP 702 P 1 HETATM 12 O O4' ADP . . . LA 5 186.853 145.551 127.233 1 73.54 ? O4' ADP 702 P 1 HETATM 13 C C3' ADP . . . LA 5 186.915 144.212 125.271 1 67.49 ? C3' ADP 702 P 1 HETATM 14 O O3' ADP . . . LA 5 187.911 143.286 124.828 1 71.1 ? O3' ADP 702 P 1 HETATM 15 C C2' ADP . . . LA 5 185.989 143.559 126.278 1 71.58 ? C2' ADP 702 P 1 HETATM 16 O O2' ADP . . . LA 5 186.41 142.218 126.545 1 71.76 ? O2' ADP 702 P 1 HETATM 17 C C1' ADP . . . LA 5 186.079 144.391 127.547 1 70.44 ? C1' ADP 702 P 1 HETATM 18 N N9 ADP . . . LA 5 184.721 144.823 127.956 1 68.31 ? N9 ADP 702 P 1 HETATM 19 C C8 ADP . . . LA 5 184.238 146.073 127.837 1 71.85 ? C8 ADP 702 P 1 HETATM 20 N N7 ADP . . . LA 5 182.966 146.156 128.299 1 67.5 ? N7 ADP 702 P 1 HETATM 21 C C5 ADP . . . LA 5 182.614 144.933 128.731 1 66.91 ? C5 ADP 702 P 1 HETATM 22 C C6 ADP . . . LA 5 181.406 144.323 129.334 1 70.17 ? C6 ADP 702 P 1 HETATM 23 N N6 ADP . . . LA 5 180.296 145.061 129.576 1 70.84 ? N6 ADP 702 P 1 HETATM 24 N N1 ADP . . . LA 5 181.45 143.007 129.638 1 73.16 ? N1 ADP 702 P 1 HETATM 25 C C2 ADP . . . LA 5 182.548 142.265 129.402 1 74.75 ? C2 ADP 702 P 1 HETATM 26 N N3 ADP . . . LA 5 183.677 142.753 128.856 1 71.73 ? N3 ADP 702 P 1 HETATM 27 C C4 ADP . . . LA 5 183.774 144.058 128.505 1 66.74 ? C4 ADP 702 P 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 86 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #