data_8UAK # _model_server_result.job_id jBoaFOzm7Ek4Hu6NVSybTA _model_server_result.datetime_utc '2024-10-10 11:26:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8uak # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 8UAK # _exptl.entry_id 8UAK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 472.466 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (6M)-3-amino-N-[3-(4-amino-4-methylpiperidin-1-yl)pyridin-2-yl]-6-[3-(trifluoromethyl)pyridin-2-yl]pyrazine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.04 _cell.angle_gamma 90 _cell.entry_id 8UAK _cell.length_a 109.818 _cell.length_b 44.532 _cell.length_c 85.691 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UAK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 178 A ARG 496 1_555 A N TPO 179 A TPO 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C TPO 179 A TPO 497 1_555 A N PHE 180 A PHE 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C LEU 319 A LEU 637 1_555 A N TPO 320 A TPO 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C TPO 320 A TPO 638 1_555 A N PRO 321 A PRO 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? # _chem_comp.formula 'C22 H23 F3 N8 O' _chem_comp.formula_weight 472.466 _chem_comp.id W39 _chem_comp.mon_nstd_flag . _chem_comp.name (6M)-3-amino-N-[3-(4-amino-4-methylpiperidin-1-yl)pyridin-2-yl]-6-[3-(trifluoromethyl)pyridin-2-yl]pyrazine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 W39 doub 397 n y C1 C5 W39 sing 398 n y C2 C3 W39 sing 399 n y C3 C4 W39 doub 400 n y N7 C3 W39 sing 401 n n N1 C4 W39 sing 402 n y C4 N2 W39 sing 403 n n C5 N1 W39 doub 404 n y N2 C6 W39 sing 405 n n C7 C6 W39 sing 406 n n C6 O1 W39 doub 407 n n C7 N3 W39 doub 408 n y C10 C7 W39 sing 409 n y N3 C8 W39 sing 410 n y C8 C9 W39 doub 411 n y C11 C8 W39 sing 412 n n C9 N4 W39 sing 413 n y N4 C10 W39 doub 414 n y N5 C10 W39 sing 415 n n C11 C12 W39 doub 416 n y N6 C11 W39 sing 417 n y C13 C12 W39 sing 418 n n C12 C14 W39 sing 419 n y F1 C13 W39 sing 420 n n F2 C13 W39 sing 421 n n F3 C13 W39 sing 422 n n C14 C15 W39 doub 423 n y C15 C16 W39 sing 424 n y C16 N6 W39 doub 425 n y N7 C17 W39 sing 426 n n C21 N7 W39 sing 427 n n C17 C18 W39 sing 428 n n C18 C19 W39 sing 429 n n C19 C20 W39 sing 430 n n N8 C19 W39 sing 431 n n C22 C19 W39 sing 432 n n C20 C21 W39 sing 433 n n C1 H1 W39 sing 434 n n C2 H2 W39 sing 435 n n C14 H14 W39 sing 436 n n C15 H15 W39 sing 437 n n C16 H16 W39 sing 438 n n C17 H172 W39 sing 439 n n C17 H171 W39 sing 440 n n C18 H182 W39 sing 441 n n C18 H181 W39 sing 442 n n C20 H202 W39 sing 443 n n C20 H201 W39 sing 444 n n C21 H211 W39 sing 445 n n C21 H212 W39 sing 446 n n C22 H221 W39 sing 447 n n C22 H223 W39 sing 448 n n C22 H222 W39 sing 449 n n C5 H5 W39 sing 450 n n C9 H9 W39 sing 451 n n N2 H3 W39 sing 452 n n N5 HN51 W39 sing 453 n n N5 HN52 W39 sing 454 n n N8 H4 W39 sing 455 n n N8 HN81 W39 sing 456 n n # _atom_sites.entry_id 8UAK _atom_sites.fract_transf_matrix[1][1] 0.009106 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004062 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022456 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012778 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 W39 A 1 701 1 W39 LI1 . C 3 HOH A 1 801 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 W39 . . . B 2 29.163 -2.615 10.521 1 60.2 ? C1 W39 701 A 1 HETATM 2 C C2 W39 . . . B 2 28.689 -3.908 10.792 1 64.15 ? C2 W39 701 A 1 HETATM 3 C C3 W39 . . . B 2 29.436 -4.785 11.611 1 60.62 ? C3 W39 701 A 1 HETATM 4 O O1 W39 . . . B 2 32.293 -3.862 14.541 1 68.39 ? O1 W39 701 A 1 HETATM 5 C C11 W39 . . . B 2 32.899 -9.795 13.612 1 72.82 ? C11 W39 701 A 1 HETATM 6 C C12 W39 . . . B 2 32.511 -9.968 12.253 1 74.53 ? C12 W39 701 A 1 HETATM 7 C C13 W39 . . . B 2 32.38 -8.823 11.253 1 77.42 ? C13 W39 701 A 1 HETATM 8 C C14 W39 . . . B 2 32.24 -11.273 11.798 1 74.6 ? C14 W39 701 A 1 HETATM 9 C C15 W39 . . . B 2 32.352 -12.359 12.68 1 70.53 ? C15 W39 701 A 1 HETATM 10 C C16 W39 . . . B 2 32.74 -12.101 13.998 1 72.5 ? C16 W39 701 A 1 HETATM 11 C C17 W39 . . . B 2 28.499 -6.772 10.675 1 65.16 ? C17 W39 701 A 1 HETATM 12 C C18 W39 . . . B 2 28.245 -8.264 10.928 1 62.68 ? C18 W39 701 A 1 HETATM 13 C C19 W39 . . . B 2 27.292 -8.482 12.113 1 71.65 ? C19 W39 701 A 1 HETATM 14 C C20 W39 . . . B 2 27.806 -7.696 13.336 1 66.25 ? C20 W39 701 A 1 HETATM 15 C C21 W39 . . . B 2 28.055 -6.213 13.022 1 67.74 ? C21 W39 701 A 1 HETATM 16 C C22 W39 . . . B 2 25.835 -8.162 11.738 1 77.79 ? C22 W39 701 A 1 HETATM 17 C C10 W39 . . . B 2 33.861 -6.169 15.541 1 75.93 ? C10 W39 701 A 1 HETATM 18 C C4 W39 . . . B 2 30.662 -4.295 12.136 1 57.67 ? C4 W39 701 A 1 HETATM 19 C C5 W39 . . . B 2 30.388 -2.231 11.077 1 65 ? C5 W39 701 A 1 HETATM 20 C C6 W39 . . . B 2 32.17 -4.961 13.998 1 61.6 ? C6 W39 701 A 1 HETATM 21 C C7 W39 . . . B 2 32.884 -6.202 14.499 1 66.32 ? C7 W39 701 A 1 HETATM 22 C C8 W39 . . . B 2 33.237 -8.509 14.285 1 71.83 ? C8 W39 701 A 1 HETATM 23 C C9 W39 . . . B 2 34.183 -8.443 15.335 1 73.7 ? C9 W39 701 A 1 HETATM 24 F F1 W39 . . . B 2 33.376 -7.963 11.426 1 69.28 ? F1 W39 701 A 1 HETATM 25 F F2 W39 . . . B 2 32.425 -9.294 10.002 1 69.14 ? F2 W39 701 A 1 HETATM 26 F F3 W39 . . . B 2 31.244 -8.151 11.411 1 86.59 ? F3 W39 701 A 1 HETATM 27 N N1 W39 . . . B 2 31.114 -3.052 11.857 1 70.5 ? N1 W39 701 A 1 HETATM 28 N N2 W39 . . . B 2 31.412 -5.18 12.921 1 60.57 ? N2 W39 701 A 1 HETATM 29 N N3 W39 . . . B 2 32.598 -7.382 13.882 1 70.79 ? N3 W39 701 A 1 HETATM 30 N N4 W39 . . . B 2 34.496 -7.284 15.96 1 79.5 ? N4 W39 701 A 1 HETATM 31 N N5 W39 . . . B 2 34.235 -5.021 16.228 1 75.63 ? N5 W39 701 A 1 HETATM 32 N N6 W39 . . . B 2 33.006 -10.86 14.446 1 80.41 ? N6 W39 701 A 1 HETATM 33 N N7 W39 . . . B 2 28.943 -6.078 11.878 1 66.28 ? N7 W39 701 A 1 HETATM 34 N N8 W39 . . . B 2 27.325 -9.887 12.452 1 81.06 ? N8 W39 701 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 34 #