data_8UAX # _model_server_result.job_id N8z4_Mol5Id30FlIjoVU9Q _model_server_result.datetime_utc '2024-10-18 05:22:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8uax # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 8UAX # _exptl.entry_id 8UAX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 418.299 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-{[(R)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]amino}propanoic acid (non-preferred name)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.32 _cell.angle_gamma 90 _cell.entry_id 8UAX _cell.length_a 100.228 _cell.length_b 32.373 _cell.length_c 72.639 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UAX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,G 1 1 B,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 84 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? disulf ? disulf2 A SG CYS 40 A CYS 40 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? disulf ? disulf3 A SG CYS 58 A CYS 58 1_555 A SG CYS 110 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? disulf ? disulf4 A SG CYS 65 A CYS 65 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? disulf ? disulf5 B SG CYS 26 B CYS 26 1_555 B SG CYS 84 B CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? disulf ? disulf6 B SG CYS 40 B CYS 40 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf7 B SG CYS 58 B CYS 58 1_555 B SG CYS 110 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? disulf ? disulf8 B SG CYS 65 B CYS 65 1_555 B SG CYS 72 B CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? # _chem_comp.formula 'C13 H19 N6 O8 P' _chem_comp.formula_weight 418.299 _chem_comp.id WFH _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-{[(R)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]amino}propanoic acid (non-preferred name)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "Alanyl-5'-O-adenosine phosphoramidate" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N1 WFH doub 364 n y C2 N3 WFH sing 365 n y N1 C6 WFH sing 366 n y N3 C4 WFH doub 367 n y C6 N6 WFH sing 368 n n C6 C5 WFH doub 369 n y C4 C5 WFH sing 370 n y C4 N9 WFH sing 371 n y C5 N7 WFH sing 372 n y O2' C2' WFH sing 373 n n N9 C1' WFH sing 374 n n N9 C8 WFH sing 375 n y N7 C8 WFH doub 376 n y C1' C2' WFH sing 377 n n C1' O4' WFH sing 378 n n C2' C3' WFH sing 379 n n O4' C4' WFH sing 380 n n C3' O3' WFH sing 381 n n C3' C4' WFH sing 382 n n C4' C5' WFH sing 383 n n C5' O5' WFH sing 384 n n O1P P WFH doub 385 n n O5' P WFH sing 386 n n P N WFH sing 387 n n P O2P WFH sing 388 n n N CA WFH sing 389 n n OA C WFH doub 390 n n C CA WFH sing 391 n n C O WFH sing 392 n n CA CB WFH sing 393 n n C8 H1 WFH sing 394 n n O H2 WFH sing 395 n n CA H3 WFH sing 396 n n CB H4 WFH sing 397 n n CB H5 WFH sing 398 n n CB H6 WFH sing 399 n n N H7 WFH sing 400 n n O2P H8 WFH sing 401 n n C5' H9 WFH sing 402 n n C5' H10 WFH sing 403 n n C4' H11 WFH sing 404 n n C3' H12 WFH sing 405 n n O3' H13 WFH sing 406 n n C2' H14 WFH sing 407 n n O2' H15 WFH sing 408 n n C1' H16 WFH sing 409 n n C2 H17 WFH sing 410 n n N6 H18 WFH sing 411 n n N6 H19 WFH sing 412 n n # _atom_sites.entry_id 8UAX _atom_sites.fract_transf_matrix[1][1] 0.009977 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000056 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.03089 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013767 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PEG A 1 201 88 PEG PEG . D 2 PEG A 1 202 89 PEG PEG . E 2 PEG A 1 203 90 PEG PEG . F 3 WFH B 1 201 201 WFH A2B . G 4 HOH A 1 301 30 HOH HOH . G 4 HOH A 2 302 20 HOH HOH . G 4 HOH A 3 303 35 HOH HOH . G 4 HOH A 4 304 38 HOH HOH . G 4 HOH A 5 305 28 HOH HOH . G 4 HOH A 6 306 71 HOH HOH . G 4 HOH A 7 307 42 HOH HOH . G 4 HOH A 8 308 57 HOH HOH . G 4 HOH A 9 309 82 HOH HOH . G 4 HOH A 10 310 52 HOH HOH . G 4 HOH A 11 311 47 HOH HOH . G 4 HOH A 12 312 37 HOH HOH . G 4 HOH A 13 313 45 HOH HOH . G 4 HOH A 14 314 46 HOH HOH . G 4 HOH A 15 315 16 HOH HOH . G 4 HOH A 16 316 44 HOH HOH . G 4 HOH A 17 317 22 HOH HOH . G 4 HOH A 18 318 40 HOH HOH . G 4 HOH A 19 319 36 HOH HOH . G 4 HOH A 20 320 14 HOH HOH . G 4 HOH A 21 321 18 HOH HOH . G 4 HOH A 22 322 67 HOH HOH . G 4 HOH A 23 323 48 HOH HOH . G 4 HOH A 24 324 13 HOH HOH . G 4 HOH A 25 325 86 HOH HOH . G 4 HOH A 26 326 24 HOH HOH . G 4 HOH A 27 327 17 HOH HOH . G 4 HOH A 28 328 50 HOH HOH . G 4 HOH A 29 329 51 HOH HOH . G 4 HOH A 30 330 74 HOH HOH . G 4 HOH A 31 331 75 HOH HOH . G 4 HOH A 32 332 41 HOH HOH . G 4 HOH A 33 333 31 HOH HOH . G 4 HOH A 34 334 43 HOH HOH . G 4 HOH A 35 335 29 HOH HOH . G 4 HOH A 36 336 49 HOH HOH . G 4 HOH A 37 337 69 HOH HOH . G 4 HOH A 38 338 68 HOH HOH . G 4 HOH A 39 339 66 HOH HOH . G 4 HOH A 40 340 10 HOH HOH . G 4 HOH A 41 341 39 HOH HOH . G 4 HOH A 42 342 63 HOH HOH . G 4 HOH A 43 343 73 HOH HOH . G 4 HOH A 44 344 78 HOH HOH . G 4 HOH A 45 345 21 HOH HOH . G 4 HOH A 46 346 70 HOH HOH . G 4 HOH A 47 347 77 HOH HOH . G 4 HOH A 48 348 87 HOH HOH . G 4 HOH A 49 349 72 HOH HOH . G 4 HOH A 50 350 81 HOH HOH . H 4 HOH B 1 301 15 HOH HOH . H 4 HOH B 2 302 65 HOH HOH . H 4 HOH B 3 303 25 HOH HOH . H 4 HOH B 4 304 55 HOH HOH . H 4 HOH B 5 305 58 HOH HOH . H 4 HOH B 6 306 6 HOH HOH . H 4 HOH B 7 307 64 HOH HOH . H 4 HOH B 8 308 23 HOH HOH . H 4 HOH B 9 309 3 HOH HOH . H 4 HOH B 10 310 9 HOH HOH . H 4 HOH B 11 311 11 HOH HOH . H 4 HOH B 12 312 54 HOH HOH . H 4 HOH B 13 313 76 HOH HOH . H 4 HOH B 14 314 12 HOH HOH . H 4 HOH B 15 315 1 HOH HOH . H 4 HOH B 16 316 8 HOH HOH . H 4 HOH B 17 317 5 HOH HOH . H 4 HOH B 18 318 56 HOH HOH . H 4 HOH B 19 319 26 HOH HOH . H 4 HOH B 20 320 7 HOH HOH . H 4 HOH B 21 321 59 HOH HOH . H 4 HOH B 22 322 85 HOH HOH . H 4 HOH B 23 323 2 HOH HOH . H 4 HOH B 24 324 27 HOH HOH . H 4 HOH B 25 325 80 HOH HOH . H 4 HOH B 26 326 79 HOH HOH . H 4 HOH B 27 327 84 HOH HOH . H 4 HOH B 28 328 19 HOH HOH . H 4 HOH B 29 329 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 WFH . . . F 3 -38.188 -12.479 16.901 1 61.37 ? C8 WFH 201 B 1 HETATM 2 C C6 WFH . . . F 3 -36.782 -14.473 14.441 1 42.61 ? C6 WFH 201 B 1 HETATM 3 C C4 WFH . . . F 3 -36.707 -12.248 15.302 1 50.64 ? C4 WFH 201 B 1 HETATM 4 O OA WFH . . . F 3 -35.18 -14.443 22.64 1 45.3 ? OA WFH 201 B 1 HETATM 5 C C WFH . . . F 3 -35.697 -13.4 23.024 1 51.71 ? C WFH 201 B 1 HETATM 6 O O WFH . . . F 3 -35.048 -12.328 23.237 1 57.15 ? O WFH 201 B 1 HETATM 7 C CA WFH . . . F 3 -37.174 -13.528 23.19 1 55.33 ? CA WFH 201 B 1 HETATM 8 C CB WFH . . . F 3 -37.561 -14.755 24.013 1 53.81 ? CB WFH 201 B 1 HETATM 9 N N WFH . . . F 3 -37.691 -13.664 21.836 1 57.93 ? N WFH 201 B 1 HETATM 10 P P WFH . . . F 3 -38.732 -12.509 21.323 1 71.73 ? P WFH 201 B 1 HETATM 11 O O1P WFH . . . F 3 -39.557 -12.982 20.132 1 72.61 ? O1P WFH 201 B 1 HETATM 12 O O2P WFH . . . F 3 -39.557 -12.249 22.584 1 77.03 ? O2P WFH 201 B 1 HETATM 13 O O5' WFH . . . F 3 -37.982 -11.119 20.96 1 63.17 ? O5' WFH 201 B 1 HETATM 14 C C5' WFH . . . F 3 -37.044 -10.984 19.903 1 57.77 ? C5' WFH 201 B 1 HETATM 15 C C4' WFH . . . F 3 -37.177 -9.717 19.043 1 59.22 ? C4' WFH 201 B 1 HETATM 16 C C3' WFH . . . F 3 -38.578 -9.332 18.499 1 60.06 ? C3' WFH 201 B 1 HETATM 17 O O3' WFH . . . F 3 -38.926 -7.999 18.841 1 56.43 ? O3' WFH 201 B 1 HETATM 18 C C2' WFH . . . F 3 -38.523 -9.456 16.969 1 65.65 ? C2' WFH 201 B 1 HETATM 19 O O2' WFH . . . F 3 -38.67 -8.19 16.279 1 68.94 ? O2' WFH 201 B 1 HETATM 20 C C1' WFH . . . F 3 -37.156 -10.124 16.675 1 66.22 ? C1' WFH 201 B 1 HETATM 21 O O4' WFH . . . F 3 -36.355 -9.969 17.881 1 64.01 ? O4' WFH 201 B 1 HETATM 22 N N9 WFH . . . F 3 -37.331 -11.587 16.293 1 60.44 ? N9 WFH 201 B 1 HETATM 23 C C5 WFH . . . F 3 -37.22 -13.555 15.332 1 46.88 ? C5 WFH 201 B 1 HETATM 24 N N7 WFH . . . F 3 -38.126 -13.705 16.309 1 47.87 ? N7 WFH 201 B 1 HETATM 25 N N3 WFH . . . F 3 -35.767 -11.887 14.362 1 43.14 ? N3 WFH 201 B 1 HETATM 26 C C2 WFH . . . F 3 -35.402 -12.847 13.498 1 48.49 ? C2 WFH 201 B 1 HETATM 27 N N1 WFH . . . F 3 -35.877 -14.122 13.512 1 42.15 ? N1 WFH 201 B 1 HETATM 28 N N6 WFH . . . F 3 -37.298 -15.709 14.557 1 48.1 ? N6 WFH 201 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #