data_8UAZ
#
_model_server_result.job_id            HGMo8pK4cMoqtHAaIv6Pzg 
_model_server_result.datetime_utc      '2024-10-18 08:33:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8uaz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":201}' 
#
_entry.id    8UAZ 
#
_exptl.entry_id    8UAZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              476.335 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-2-{[(S)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]amino}pentanedioic acid (non-preferred name)' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.43 
_cell.angle_gamma         90 
_cell.entry_id            8UAZ 
_cell.length_a            101.255 
_cell.length_b            32.957 
_cell.length_c            73.987 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8UAZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,F 1 1 
B,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 84 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
disulf ? disulf2 A SG CYS 40 A CYS 40 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
disulf ? disulf3 A SG CYS 58 A CYS 58 1_555 A SG CYS 110 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf4 A SG CYS 65 A CYS 65 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
disulf ? disulf5 B SG CYS 26 B CYS 26 1_555 B SG CYS 84 B CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
disulf ? disulf6 B SG CYS 40 B CYS 40 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
disulf ? disulf7 B SG CYS 58 B CYS 58 1_555 B SG CYS 110 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? 
disulf ? disulf8 B SG CYS 65 B CYS 65 1_555 B SG CYS 72 B CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
#
_chem_comp.formula           'C15 H21 N6 O10 P' 
_chem_comp.formula_weight    476.335 
_chem_comp.id                WFU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-2-{[(S)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]amino}pentanedioic acid (non-preferred name)' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "Glutamyl-5'-O-adenosine phosphoramidate" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N6 C6 WFU sing 364 n n 
C6 N1 WFU doub 365 n y 
C6 C5 WFU sing 366 n y 
N1 C2 WFU sing 367 n y 
C5 N7 WFU sing 368 n y 
C5 C4 WFU doub 369 n y 
N7 C8 WFU doub 370 n y 
C2 N3 WFU doub 371 n y 
C4 N3 WFU sing 372 n y 
C4 N9 WFU sing 373 n y 
C8 N9 WFU sing 374 n y 
N9 C1' WFU sing 375 n n 
C1' O4' WFU sing 376 n n 
C1' C2' WFU sing 377 n n 
O4' C4' WFU sing 378 n n 
C2' C3' WFU sing 379 n n 
C2' O2' WFU sing 380 n n 
C5' O5' WFU sing 381 n n 
C5' C4' WFU sing 382 n n 
O5' P WFU sing 383 n n 
C3' C4' WFU sing 384 n n 
C3' O3' WFU sing 385 n n 
OP1 P WFU doub 386 n n 
P N WFU sing 387 n n 
P OP2 WFU sing 388 n n 
N CA WFU sing 389 n n 
O C WFU doub 390 n n 
CA C WFU sing 391 n n 
CA CB WFU sing 392 n n 
C OXT WFU sing 393 n n 
OE1 CD WFU doub 394 n n 
CG CB WFU sing 395 n n 
CG CD WFU sing 396 n n 
CD OE2 WFU sing 397 n n 
C2 H1 WFU sing 398 n n 
CA H2 WFU sing 399 n n 
CB H3 WFU sing 400 n n 
CB H4 WFU sing 401 n n 
CG H5 WFU sing 402 n n 
CG H6 WFU sing 403 n n 
C1' H7 WFU sing 404 n n 
C2' H8 WFU sing 405 n n 
O2' H9 WFU sing 406 n n 
OP2 H10 WFU sing 407 n n 
C3' H11 WFU sing 408 n n 
O3' H12 WFU sing 409 n n 
C4' H13 WFU sing 410 n n 
C5' H14 WFU sing 411 n n 
C5' H15 WFU sing 412 n n 
OE2 H16 WFU sing 413 n n 
OXT H17 WFU sing 414 n n 
N H18 WFU sing 415 n n 
C8 H19 WFU sing 416 n n 
N6 H20 WFU sing 417 n n 
N6 H21 WFU sing 418 n n 
#
_atom_sites.entry_id                     8UAZ 
_atom_sites.fract_transf_matrix[1][1]    0.009876 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000075 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.030343 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013516 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 WFU A 1 201 201 WFU AG9 . 
D 3 PEG A 1 202 202 PEG PEG . 
E 2 WFU B 1 201 201 WFU AG9 . 
F 4 HOH A 1 301 126 HOH HOH . 
F 4 HOH A 2 302 23 HOH HOH . 
F 4 HOH A 3 303 4 HOH HOH . 
F 4 HOH A 4 304 113 HOH HOH . 
F 4 HOH A 5 305 59 HOH HOH . 
F 4 HOH A 6 306 87 HOH HOH . 
F 4 HOH A 7 307 120 HOH HOH . 
F 4 HOH A 8 308 24 HOH HOH . 
F 4 HOH A 9 309 121 HOH HOH . 
F 4 HOH A 10 310 78 HOH HOH . 
F 4 HOH A 11 311 88 HOH HOH . 
F 4 HOH A 12 312 83 HOH HOH . 
F 4 HOH A 13 313 68 HOH HOH . 
F 4 HOH A 14 314 72 HOH HOH . 
F 4 HOH A 15 315 116 HOH HOH . 
F 4 HOH A 16 316 11 HOH HOH . 
F 4 HOH A 17 317 27 HOH HOH . 
F 4 HOH A 18 318 70 HOH HOH . 
F 4 HOH A 19 319 18 HOH HOH . 
F 4 HOH A 20 320 82 HOH HOH . 
F 4 HOH A 21 321 61 HOH HOH . 
F 4 HOH A 22 322 12 HOH HOH . 
F 4 HOH A 23 323 69 HOH HOH . 
F 4 HOH A 24 324 67 HOH HOH . 
F 4 HOH A 25 325 5 HOH HOH . 
F 4 HOH A 26 326 15 HOH HOH . 
F 4 HOH A 27 327 77 HOH HOH . 
F 4 HOH A 28 328 8 HOH HOH . 
F 4 HOH A 29 329 112 HOH HOH . 
F 4 HOH A 30 330 84 HOH HOH . 
F 4 HOH A 31 331 29 HOH HOH . 
F 4 HOH A 32 332 17 HOH HOH . 
F 4 HOH A 33 333 19 HOH HOH . 
F 4 HOH A 34 334 104 HOH HOH . 
F 4 HOH A 35 335 81 HOH HOH . 
F 4 HOH A 36 336 13 HOH HOH . 
F 4 HOH A 37 337 64 HOH HOH . 
F 4 HOH A 38 338 1 HOH HOH . 
F 4 HOH A 39 339 123 HOH HOH . 
F 4 HOH A 40 340 80 HOH HOH . 
F 4 HOH A 41 341 10 HOH HOH . 
F 4 HOH A 42 342 31 HOH HOH . 
F 4 HOH A 43 343 73 HOH HOH . 
F 4 HOH A 44 344 65 HOH HOH . 
F 4 HOH A 45 345 130 HOH HOH . 
F 4 HOH A 46 346 33 HOH HOH . 
F 4 HOH A 47 347 89 HOH HOH . 
F 4 HOH A 48 348 62 HOH HOH . 
F 4 HOH A 49 349 71 HOH HOH . 
F 4 HOH A 50 350 30 HOH HOH . 
F 4 HOH A 51 351 110 HOH HOH . 
F 4 HOH A 52 352 16 HOH HOH . 
F 4 HOH A 53 353 14 HOH HOH . 
F 4 HOH A 54 354 115 HOH HOH . 
F 4 HOH A 55 355 85 HOH HOH . 
F 4 HOH A 56 356 102 HOH HOH . 
F 4 HOH A 57 357 86 HOH HOH . 
F 4 HOH A 58 358 22 HOH HOH . 
F 4 HOH A 59 359 103 HOH HOH . 
F 4 HOH A 60 360 127 HOH HOH . 
F 4 HOH A 61 361 96 HOH HOH . 
F 4 HOH A 62 362 111 HOH HOH . 
F 4 HOH A 63 363 105 HOH HOH . 
F 4 HOH A 64 364 66 HOH HOH . 
F 4 HOH A 65 365 114 HOH HOH . 
F 4 HOH A 66 366 107 HOH HOH . 
F 4 HOH A 67 367 79 HOH HOH . 
F 4 HOH A 68 368 124 HOH HOH . 
F 4 HOH A 69 369 3 HOH HOH . 
G 4 HOH B 1 301 100 HOH HOH . 
G 4 HOH B 2 302 94 HOH HOH . 
G 4 HOH B 3 303 95 HOH HOH . 
G 4 HOH B 4 304 93 HOH HOH . 
G 4 HOH B 5 305 117 HOH HOH . 
G 4 HOH B 6 306 76 HOH HOH . 
G 4 HOH B 7 307 63 HOH HOH . 
G 4 HOH B 8 308 106 HOH HOH . 
G 4 HOH B 9 309 129 HOH HOH . 
G 4 HOH B 10 310 6 HOH HOH . 
G 4 HOH B 11 311 108 HOH HOH . 
G 4 HOH B 12 312 122 HOH HOH . 
G 4 HOH B 13 313 99 HOH HOH . 
G 4 HOH B 14 314 118 HOH HOH . 
G 4 HOH B 15 315 75 HOH HOH . 
G 4 HOH B 16 316 91 HOH HOH . 
G 4 HOH B 17 317 101 HOH HOH . 
G 4 HOH B 18 318 90 HOH HOH . 
G 4 HOH B 19 319 74 HOH HOH . 
G 4 HOH B 20 320 60 HOH HOH . 
G 4 HOH B 21 321 7 HOH HOH . 
G 4 HOH B 22 322 98 HOH HOH . 
G 4 HOH B 23 323 109 HOH HOH . 
G 4 HOH B 24 324 92 HOH HOH . 
G 4 HOH B 25 325 97 HOH HOH . 
G 4 HOH B 26 326 125 HOH HOH . 
G 4 HOH B 27 327 119 HOH HOH . 
G 4 HOH B 28 328 128 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P WFU . . . E 2 39.795 -19.653 -13.953 1 107.31 ? P WFU 201 B 1 
HETATM 2 N N1 WFU . . . E 2 36.07 -20.894 -22.893 1 26.11 ? N1 WFU 201 B 1 
HETATM 3 C C2 WFU . . . E 2 36.641 -21.752 -21.863 1 27.06 ? C2 WFU 201 B 1 
HETATM 4 N N3 WFU . . . E 2 37.646 -21.215 -20.976 1 27.41 ? N3 WFU 201 B 1 
HETATM 5 C C4 WFU . . . E 2 38.128 -19.989 -21.168 1 30.02 ? C4 WFU 201 B 1 
HETATM 6 C C5 WFU . . . E 2 37.572 -19.218 -22.133 1 30.94 ? C5 WFU 201 B 1 
HETATM 7 C C6 WFU . . . E 2 36.612 -19.608 -22.937 1 28.08 ? C6 WFU 201 B 1 
HETATM 8 C CA WFU . . . E 2 37.543 -20.347 -14.995 1 64.85 ? CA WFU 201 B 1 
HETATM 9 C CB WFU . . . E 2 37.347 -21.543 -15.963 1 61.9 ? CB WFU 201 B 1 
HETATM 10 C CD WFU . . . E 2 38.399 -23 -17.727 1 64.7 ? CD WFU 201 B 1 
HETATM 11 C CG WFU . . . E 2 38.657 -21.915 -16.648 1 60.09 ? CG WFU 201 B 1 
HETATM 12 C C1' WFU . . . E 2 40.174 -19.421 -19.447 1 61.19 ? C1' WFU 201 B 1 
HETATM 13 O OP1 WFU . . . E 2 40.895 -20.196 -13.12 1 105.72 ? OP1 WFU 201 B 1 
HETATM 14 C C2' WFU . . . E 2 40.881 -18.076 -19.043 1 73.31 ? C2' WFU 201 B 1 
HETATM 15 O O2' WFU . . . E 2 42.008 -17.807 -19.896 1 76.95 ? O2' WFU 201 B 1 
HETATM 16 O OP2 WFU . . . E 2 39.329 -18.362 -13.38 1 116.95 ? OP2 WFU 201 B 1 
HETATM 17 C C3' WFU . . . E 2 41.351 -18.37 -17.627 1 78.27 ? C3' WFU 201 B 1 
HETATM 18 O O3' WFU . . . E 2 42.704 -17.954 -17.359 1 83.44 ? O3' WFU 201 B 1 
HETATM 19 C C4' WFU . . . E 2 41.258 -19.846 -17.528 1 78.92 ? C4' WFU 201 B 1 
HETATM 20 O O4' WFU . . . E 2 39.999 -20.131 -18.243 1 70.77 ? O4' WFU 201 B 1 
HETATM 21 C C5' WFU . . . E 2 41.252 -20.268 -16.074 1 89.41 ? C5' WFU 201 B 1 
HETATM 22 O O5' WFU . . . E 2 40.317 -19.411 -15.443 1 99.52 ? O5' WFU 201 B 1 
HETATM 23 O OE1 WFU . . . E 2 39.315 -23.836 -17.947 1 63.33 ? OE1 WFU 201 B 1 
HETATM 24 O OE2 WFU . . . E 2 37.293 -22.976 -18.315 1 55.73 ? OE2 WFU 201 B 1 
HETATM 25 C C WFU . . . E 2 36.208 -20.019 -14.194 1 61.28 ? C WFU 201 B 1 
HETATM 26 O OXT WFU . . . E 2 35.872 -18.789 -14.153 1 30.72 ? OXT WFU 201 B 1 
HETATM 27 O O WFU . . . E 2 35.567 -20.997 -13.63 1 48.24 ? O WFU 201 B 1 
HETATM 28 N N WFU . . . E 2 38.64 -20.635 -14.053 1 87.13 ? N WFU 201 B 1 
HETATM 29 N N9 WFU . . . E 2 39.04 -19.215 -20.522 1 38.51 ? N9 WFU 201 B 1 
HETATM 30 C C8 WFU . . . E 2 39.066 -18.032 -21.154 1 31.49 ? C8 WFU 201 B 1 
HETATM 31 N N7 WFU . . . E 2 38.133 -18.001 -22.098 1 27.8 ? N7 WFU 201 B 1 
HETATM 32 N N6 WFU . . . E 2 36.254 -18.694 -23.858 1 25.82 ? N6 WFU 201 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           32 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           32 
#