data_8UB0 # _model_server_result.job_id Qvj5ZVNFxaMDmBWkidJemw _model_server_result.datetime_utc '2024-10-26 20:32:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ub0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 8UB0 # _exptl.entry_id 8UB0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.18 _cell.angle_gamma 90 _cell.entry_id 8UB0 _cell.length_a 100.829 _cell.length_b 32.807 _cell.length_c 74.156 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UB0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,G 1 1 B,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 84 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? disulf ? disulf2 A SG CYS 40 A CYS 40 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? disulf ? disulf3 A SG CYS 58 A CYS 58 1_555 A SG CYS 110 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? disulf ? disulf4 A SG CYS 65 A CYS 65 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf5 B SG CYS 26 B CYS 26 1_555 B SG CYS 84 B CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? disulf ? disulf6 B SG CYS 40 B CYS 40 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? disulf ? disulf7 B SG CYS 58 B CYS 58 1_555 B SG CYS 110 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? disulf ? disulf8 B SG CYS 65 B CYS 65 1_555 B SG CYS 72 B CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 70 n n P O2P AMP sing 71 n n P O3P AMP sing 72 n n P O5' AMP sing 73 n n O2P HOP2 AMP sing 74 n n O3P HOP3 AMP sing 75 n n O5' C5' AMP sing 76 n n C5' C4' AMP sing 77 n n C5' "H5'1" AMP sing 78 n n C5' "H5'2" AMP sing 79 n n C4' O4' AMP sing 80 n n C4' C3' AMP sing 81 n n C4' H4' AMP sing 82 n n O4' C1' AMP sing 83 n n C3' O3' AMP sing 84 n n C3' C2' AMP sing 85 n n C3' H3' AMP sing 86 n n O3' HO3' AMP sing 87 n n C2' O2' AMP sing 88 n n C2' C1' AMP sing 89 n n C2' H2' AMP sing 90 n n O2' HO2' AMP sing 91 n n C1' N9 AMP sing 92 n n C1' H1' AMP sing 93 n n N9 C8 AMP sing 94 n y N9 C4 AMP sing 95 n y C8 N7 AMP doub 96 n y C8 H8 AMP sing 97 n n N7 C5 AMP sing 98 n y C5 C6 AMP sing 99 n y C5 C4 AMP doub 100 n y C6 N6 AMP sing 101 n n C6 N1 AMP doub 102 n y N6 HN61 AMP sing 103 n n N6 HN62 AMP sing 104 n n N1 C2 AMP sing 105 n y C2 N3 AMP doub 106 n y C2 H2 AMP sing 107 n n N3 C4 AMP sing 108 n y # _atom_sites.entry_id 8UB0 _atom_sites.fract_transf_matrix[1][1] 0.009918 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000031 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030481 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013485 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AMP A 1 201 201 AMP AMP . D 3 PEG A 1 202 1 PEG PEG . E 3 PEG A 1 203 2 PEG PEG . F 4 A1BA4 B 1 201 201 A1BA4 AXV . G 5 HOH A 1 301 47 HOH HOH . G 5 HOH A 2 302 26 HOH HOH . G 5 HOH A 3 303 66 HOH HOH . G 5 HOH A 4 304 7 HOH HOH . G 5 HOH A 5 305 16 HOH HOH . G 5 HOH A 6 306 33 HOH HOH . G 5 HOH A 7 307 50 HOH HOH . G 5 HOH A 8 308 20 HOH HOH . G 5 HOH A 9 309 71 HOH HOH . G 5 HOH A 10 310 12 HOH HOH . G 5 HOH A 11 311 38 HOH HOH . G 5 HOH A 12 312 28 HOH HOH . G 5 HOH A 13 313 44 HOH HOH . G 5 HOH A 14 314 27 HOH HOH . G 5 HOH A 15 315 37 HOH HOH . G 5 HOH A 16 316 5 HOH HOH . G 5 HOH A 17 317 11 HOH HOH . G 5 HOH A 18 318 36 HOH HOH . G 5 HOH A 19 319 81 HOH HOH . G 5 HOH A 20 320 8 HOH HOH . G 5 HOH A 21 321 22 HOH HOH . G 5 HOH A 22 322 75 HOH HOH . G 5 HOH A 23 323 53 HOH HOH . G 5 HOH A 24 324 41 HOH HOH . G 5 HOH A 25 325 80 HOH HOH . G 5 HOH A 26 326 45 HOH HOH . G 5 HOH A 27 327 18 HOH HOH . G 5 HOH A 28 328 51 HOH HOH . G 5 HOH A 29 329 34 HOH HOH . G 5 HOH A 30 330 52 HOH HOH . G 5 HOH A 31 331 32 HOH HOH . G 5 HOH A 32 332 35 HOH HOH . G 5 HOH A 33 333 42 HOH HOH . G 5 HOH A 34 334 70 HOH HOH . G 5 HOH A 35 335 3 HOH HOH . G 5 HOH A 36 336 23 HOH HOH . G 5 HOH A 37 337 43 HOH HOH . G 5 HOH A 38 338 9 HOH HOH . G 5 HOH A 39 339 4 HOH HOH . G 5 HOH A 40 340 14 HOH HOH . G 5 HOH A 41 341 17 HOH HOH . G 5 HOH A 42 342 6 HOH HOH . G 5 HOH A 43 343 78 HOH HOH . G 5 HOH A 44 344 31 HOH HOH . G 5 HOH A 45 345 24 HOH HOH . G 5 HOH A 46 346 74 HOH HOH . G 5 HOH A 47 347 67 HOH HOH . G 5 HOH A 48 348 65 HOH HOH . G 5 HOH A 49 349 13 HOH HOH . G 5 HOH A 50 350 19 HOH HOH . G 5 HOH A 51 351 21 HOH HOH . G 5 HOH A 52 352 39 HOH HOH . H 5 HOH B 1 301 76 HOH HOH . H 5 HOH B 2 302 73 HOH HOH . H 5 HOH B 3 303 60 HOH HOH . H 5 HOH B 4 304 55 HOH HOH . H 5 HOH B 5 305 57 HOH HOH . H 5 HOH B 6 306 10 HOH HOH . H 5 HOH B 7 307 77 HOH HOH . H 5 HOH B 8 308 49 HOH HOH . H 5 HOH B 9 309 61 HOH HOH . H 5 HOH B 10 310 48 HOH HOH . H 5 HOH B 11 311 62 HOH HOH . H 5 HOH B 12 312 54 HOH HOH . H 5 HOH B 13 313 40 HOH HOH . H 5 HOH B 14 314 25 HOH HOH . H 5 HOH B 15 315 69 HOH HOH . H 5 HOH B 16 316 72 HOH HOH . H 5 HOH B 17 317 15 HOH HOH . H 5 HOH B 18 318 46 HOH HOH . H 5 HOH B 19 319 30 HOH HOH . H 5 HOH B 20 320 56 HOH HOH . H 5 HOH B 21 321 59 HOH HOH . H 5 HOH B 22 322 29 HOH HOH . H 5 HOH B 23 323 58 HOH HOH . H 5 HOH B 24 324 68 HOH HOH . H 5 HOH B 25 325 64 HOH HOH . H 5 HOH B 26 326 63 HOH HOH . H 5 HOH B 27 327 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . C 2 6.006 -2.294 -40.202 0 30 ? P AMP 201 A 1 HETATM 2 O O1P AMP . . . C 2 6.153 -0.99 -40.963 0 30 ? O1P AMP 201 A 1 HETATM 3 O O2P AMP . . . C 2 7.323 -2.772 -39.619 0 30 ? O2P AMP 201 A 1 HETATM 4 O O3P AMP . . . C 2 5.304 -3.363 -41.024 0 30 ? O3P AMP 201 A 1 HETATM 5 O O5' AMP . . . C 2 5.022 -1.969 -38.947 0 30 ? O5' AMP 201 A 1 HETATM 6 C C5' AMP . . . C 2 5.431 -2.316 -37.595 0 30 ? C5' AMP 201 A 1 HETATM 7 C C4' AMP . . . C 2 4.957 -3.712 -37.274 0 30 ? C4' AMP 201 A 1 HETATM 8 O O4' AMP . . . C 2 5.178 -4.553 -38.434 0 30 ? O4' AMP 201 A 1 HETATM 9 C C3' AMP . . . C 2 5.666 -4.404 -36.102 0 30 ? C3' AMP 201 A 1 HETATM 10 O O3' AMP . . . C 2 4.827 -4.401 -34.955 0 30 ? O3' AMP 201 A 1 HETATM 11 C C2' AMP . . . C 2 5.885 -5.842 -36.578 0 30 ? C2' AMP 201 A 1 HETATM 12 O O2' AMP . . . C 2 4.848 -6.685 -36.125 0 30 ? O2' AMP 201 A 1 HETATM 13 C C1' AMP . . . C 2 5.91 -5.71 -38.104 0 30 ? C1' AMP 201 A 1 HETATM 14 N N9 AMP . . . C 2 7.228 -5.31 -38.805 1 73.84 ? N9 AMP 201 A 1 HETATM 15 C C8 AMP . . . C 2 8.345 -4.779 -38.21 1 65.63 ? C8 AMP 201 A 1 HETATM 16 N N7 AMP . . . C 2 9.451 -5.045 -38.86 1 69.13 ? N7 AMP 201 A 1 HETATM 17 C C5 AMP . . . C 2 9.044 -5.801 -39.953 1 62.48 ? C5 AMP 201 A 1 HETATM 18 C C6 AMP . . . C 2 9.751 -6.399 -41.02 1 55.35 ? C6 AMP 201 A 1 HETATM 19 N N6 AMP . . . C 2 11.067 -6.32 -41.172 1 54.75 ? N6 AMP 201 A 1 HETATM 20 N N1 AMP . . . C 2 9.04 -7.089 -41.943 1 55.07 ? N1 AMP 201 A 1 HETATM 21 C C2 AMP . . . C 2 7.714 -7.172 -41.787 1 60.49 ? C2 AMP 201 A 1 HETATM 22 N N3 AMP . . . C 2 6.943 -6.656 -40.83 1 68.8 ? N3 AMP 201 A 1 HETATM 23 C C4 AMP . . . C 2 7.673 -5.973 -39.929 1 70.19 ? C4 AMP 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 23 #