data_8UB1
#
_model_server_result.job_id            xBx8fXQaaxYcTHLZfB_19Q 
_model_server_result.datetime_utc      '2024-10-18 08:37:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ub1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    8UB1 
#
_exptl.entry_id    8UB1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              402.343 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-O-[(R)-(butylamino)(hydroxy)phosphoryl]adenosine" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.71 
_cell.angle_gamma         90 
_cell.entry_id            8UB1 
_cell.length_a            100.027 
_cell.length_b            32.123 
_cell.length_c            72.425 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8UB1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D 1 1 
B,C,E 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 84 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
disulf ? disulf2 A SG CYS 40 A CYS 40 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
disulf ? disulf3 A SG CYS 58 A CYS 58 1_555 A SG CYS 110 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf4 A SG CYS 65 A CYS 65 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
disulf ? disulf5 B SG CYS 26 B CYS 26 1_555 B SG CYS 84 B CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
disulf ? disulf6 B SG CYS 40 B CYS 40 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? 
disulf ? disulf7 B SG CYS 58 B CYS 58 1_555 B SG CYS 110 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? 
disulf ? disulf8 B SG CYS 65 B CYS 65 1_555 B SG CYS 72 B CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
#
_chem_comp.formula           'C14 H23 N6 O6 P' 
_chem_comp.formula_weight    402.343 
_chem_comp.id                WFL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-O-[(R)-(butylamino)(hydroxy)phosphoryl]adenosine" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N6 C6 WFL sing 348 n n 
C6 N1 WFL doub 349 n y 
C6 C5 WFL sing 350 n y 
N1 C2 WFL sing 351 n y 
C5 N7 WFL sing 352 n y 
C5 C4 WFL doub 353 n y 
N7 C8 WFL doub 354 n y 
C2 N3 WFL doub 355 n y 
C4 N3 WFL sing 356 n y 
C4 N9 WFL sing 357 n y 
C8 N9 WFL sing 358 n y 
N9 C1' WFL sing 359 n n 
C1' C2' WFL sing 360 n n 
C1' O4' WFL sing 361 n n 
O2' C2' WFL sing 362 n n 
C2' C3' WFL sing 363 n n 
O4' C4' WFL sing 364 n n 
C4' C3' WFL sing 365 n n 
C4' C5' WFL sing 366 n n 
C3' O3' WFL sing 367 n n 
C5' O5' WFL sing 368 n n 
N CA WFL sing 369 n n 
N P WFL sing 370 n n 
O5' P WFL sing 371 n n 
CA CB WFL sing 372 n n 
CB CC WFL sing 373 n n 
P O2P WFL doub 374 n n 
P O1P WFL sing 375 n n 
CC CD WFL sing 376 n n 
O1P H1 WFL sing 377 n n 
N H2 WFL sing 378 n n 
CA H3 WFL sing 379 n n 
CA H4 WFL sing 380 n n 
CB H5 WFL sing 381 n n 
CC H6 WFL sing 382 n n 
CD H7 WFL sing 383 n n 
CD H8 WFL sing 384 n n 
CD H9 WFL sing 385 n n 
C5' H10 WFL sing 386 n n 
C5' H11 WFL sing 387 n n 
C4' H12 WFL sing 388 n n 
C3' H13 WFL sing 389 n n 
O3' H14 WFL sing 390 n n 
C2' H15 WFL sing 391 n n 
O2' H16 WFL sing 392 n n 
C1' H17 WFL sing 393 n n 
C8 H18 WFL sing 394 n n 
C2 H19 WFL sing 395 n n 
N6 H20 WFL sing 396 n n 
N6 H21 WFL sing 397 n n 
CB H22 WFL sing 398 n n 
CC H23 WFL sing 399 n n 
#
_atom_sites.entry_id                     8UB1 
_atom_sites.fract_transf_matrix[1][1]    0.009997 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000124 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.03113 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013808 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 WFL B 1 201 201 WFL A2A . 
D 3 HOH A 1 201 138 HOH HOH . 
D 3 HOH A 2 202 81 HOH HOH . 
D 3 HOH A 3 203 59 HOH HOH . 
D 3 HOH A 4 204 48 HOH HOH . 
D 3 HOH A 5 205 86 HOH HOH . 
D 3 HOH A 6 206 78 HOH HOH . 
D 3 HOH A 7 207 76 HOH HOH . 
D 3 HOH A 8 208 99 HOH HOH . 
D 3 HOH A 9 209 19 HOH HOH . 
D 3 HOH A 10 210 101 HOH HOH . 
D 3 HOH A 11 211 112 HOH HOH . 
D 3 HOH A 12 212 15 HOH HOH . 
D 3 HOH A 13 213 71 HOH HOH . 
D 3 HOH A 14 214 68 HOH HOH . 
D 3 HOH A 15 215 66 HOH HOH . 
D 3 HOH A 16 216 73 HOH HOH . 
D 3 HOH A 17 217 61 HOH HOH . 
D 3 HOH A 18 218 104 HOH HOH . 
D 3 HOH A 19 219 54 HOH HOH . 
D 3 HOH A 20 220 91 HOH HOH . 
D 3 HOH A 21 221 14 HOH HOH . 
D 3 HOH A 22 222 62 HOH HOH . 
D 3 HOH A 23 223 87 HOH HOH . 
D 3 HOH A 24 224 65 HOH HOH . 
D 3 HOH A 25 225 26 HOH HOH . 
D 3 HOH A 26 226 69 HOH HOH . 
D 3 HOH A 27 227 45 HOH HOH . 
D 3 HOH A 28 228 34 HOH HOH . 
D 3 HOH A 29 229 64 HOH HOH . 
D 3 HOH A 30 230 72 HOH HOH . 
D 3 HOH A 31 231 77 HOH HOH . 
D 3 HOH A 32 232 56 HOH HOH . 
D 3 HOH A 33 233 89 HOH HOH . 
D 3 HOH A 34 234 53 HOH HOH . 
D 3 HOH A 35 235 84 HOH HOH . 
D 3 HOH A 36 236 24 HOH HOH . 
D 3 HOH A 37 237 110 HOH HOH . 
D 3 HOH A 38 238 23 HOH HOH . 
D 3 HOH A 39 239 63 HOH HOH . 
D 3 HOH A 40 240 12 HOH HOH . 
D 3 HOH A 41 241 85 HOH HOH . 
D 3 HOH A 42 242 42 HOH HOH . 
D 3 HOH A 43 243 57 HOH HOH . 
D 3 HOH A 44 244 100 HOH HOH . 
D 3 HOH A 45 245 90 HOH HOH . 
D 3 HOH A 46 246 13 HOH HOH . 
D 3 HOH A 47 247 88 HOH HOH . 
D 3 HOH A 48 248 135 HOH HOH . 
D 3 HOH A 49 249 50 HOH HOH . 
D 3 HOH A 50 250 49 HOH HOH . 
D 3 HOH A 51 251 79 HOH HOH . 
D 3 HOH A 52 252 113 HOH HOH . 
D 3 HOH A 53 253 52 HOH HOH . 
D 3 HOH A 54 254 75 HOH HOH . 
D 3 HOH A 55 255 27 HOH HOH . 
D 3 HOH A 56 256 102 HOH HOH . 
D 3 HOH A 57 257 106 HOH HOH . 
D 3 HOH A 58 258 83 HOH HOH . 
D 3 HOH A 59 259 67 HOH HOH . 
D 3 HOH A 60 260 58 HOH HOH . 
D 3 HOH A 61 261 43 HOH HOH . 
D 3 HOH A 62 262 70 HOH HOH . 
D 3 HOH A 63 263 51 HOH HOH . 
D 3 HOH A 64 264 60 HOH HOH . 
D 3 HOH A 65 265 96 HOH HOH . 
D 3 HOH A 66 266 16 HOH HOH . 
D 3 HOH A 67 267 115 HOH HOH . 
D 3 HOH A 68 268 111 HOH HOH . 
D 3 HOH A 69 269 74 HOH HOH . 
D 3 HOH A 70 270 80 HOH HOH . 
D 3 HOH A 71 271 116 HOH HOH . 
D 3 HOH A 72 272 114 HOH HOH . 
D 3 HOH A 73 273 109 HOH HOH . 
D 3 HOH A 74 274 103 HOH HOH . 
D 3 HOH A 75 275 105 HOH HOH . 
D 3 HOH A 76 276 55 HOH HOH . 
D 3 HOH A 77 277 20 HOH HOH . 
D 3 HOH A 78 278 82 HOH HOH . 
D 3 HOH A 79 279 25 HOH HOH . 
E 3 HOH B 1 301 144 HOH HOH . 
E 3 HOH B 2 302 6 HOH HOH . 
E 3 HOH B 3 303 143 HOH HOH . 
E 3 HOH B 4 304 123 HOH HOH . 
E 3 HOH B 5 305 1 HOH HOH . 
E 3 HOH B 6 306 132 HOH HOH . 
E 3 HOH B 7 307 125 HOH HOH . 
E 3 HOH B 8 308 131 HOH HOH . 
E 3 HOH B 9 309 41 HOH HOH . 
E 3 HOH B 10 310 46 HOH HOH . 
E 3 HOH B 11 311 93 HOH HOH . 
E 3 HOH B 12 312 8 HOH HOH . 
E 3 HOH B 13 313 129 HOH HOH . 
E 3 HOH B 14 314 10 HOH HOH . 
E 3 HOH B 15 315 44 HOH HOH . 
E 3 HOH B 16 316 35 HOH HOH . 
E 3 HOH B 17 317 30 HOH HOH . 
E 3 HOH B 18 318 126 HOH HOH . 
E 3 HOH B 19 319 4 HOH HOH . 
E 3 HOH B 20 320 36 HOH HOH . 
E 3 HOH B 21 321 11 HOH HOH . 
E 3 HOH B 22 322 32 HOH HOH . 
E 3 HOH B 23 323 3 HOH HOH . 
E 3 HOH B 24 324 21 HOH HOH . 
E 3 HOH B 25 325 37 HOH HOH . 
E 3 HOH B 26 326 97 HOH HOH . 
E 3 HOH B 27 327 33 HOH HOH . 
E 3 HOH B 28 328 134 HOH HOH . 
E 3 HOH B 29 329 47 HOH HOH . 
E 3 HOH B 30 330 17 HOH HOH . 
E 3 HOH B 31 331 22 HOH HOH . 
E 3 HOH B 32 332 107 HOH HOH . 
E 3 HOH B 33 333 2 HOH HOH . 
E 3 HOH B 34 334 108 HOH HOH . 
E 3 HOH B 35 335 92 HOH HOH . 
E 3 HOH B 36 336 140 HOH HOH . 
E 3 HOH B 37 337 7 HOH HOH . 
E 3 HOH B 38 338 117 HOH HOH . 
E 3 HOH B 39 339 9 HOH HOH . 
E 3 HOH B 40 340 39 HOH HOH . 
E 3 HOH B 41 341 142 HOH HOH . 
E 3 HOH B 42 342 40 HOH HOH . 
E 3 HOH B 43 343 120 HOH HOH . 
E 3 HOH B 44 344 28 HOH HOH . 
E 3 HOH B 45 345 5 HOH HOH . 
E 3 HOH B 46 346 124 HOH HOH . 
E 3 HOH B 47 347 136 HOH HOH . 
E 3 HOH B 48 348 128 HOH HOH . 
E 3 HOH B 49 349 118 HOH HOH . 
E 3 HOH B 50 350 139 HOH HOH . 
E 3 HOH B 51 351 18 HOH HOH . 
E 3 HOH B 52 352 122 HOH HOH . 
E 3 HOH B 53 353 121 HOH HOH . 
E 3 HOH B 54 354 127 HOH HOH . 
E 3 HOH B 55 355 119 HOH HOH . 
E 3 HOH B 56 356 29 HOH HOH . 
E 3 HOH B 57 357 38 HOH HOH . 
E 3 HOH B 58 358 98 HOH HOH . 
E 3 HOH B 59 359 31 HOH HOH . 
E 3 HOH B 60 360 133 HOH HOH . 
E 3 HOH B 61 361 94 HOH HOH . 
E 3 HOH B 62 362 130 HOH HOH . 
E 3 HOH B 63 363 137 HOH HOH . 
E 3 HOH B 64 364 141 HOH HOH . 
E 3 HOH B 65 365 95 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2P WFL . . . C 2 -40.194 -14.011 22.819 1 66.4 ? O2P WFL 201 B 1 
HETATM 2 P P WFL . . . C 2 -38.971 -13.12 22.638 1 66.01 ? P WFL 201 B 1 
HETATM 3 O O1P WFL . . . C 2 -38.432 -12.745 24.003 1 63.82 ? O1P WFL 201 B 1 
HETATM 4 N N WFL . . . C 2 -37.79 -13.885 21.73 1 48.4 ? N WFL 201 B 1 
HETATM 5 C CA WFL . . . C 2 -36.693 -14.623 22.335 1 38.08 ? CA WFL 201 B 1 
HETATM 6 C CB WFL . . . C 2 -35.495 -13.747 22.595 1 30.29 ? CB WFL 201 B 1 
HETATM 7 C CC WFL . . . C 2 -35.596 -12.234 22.644 1 33.37 ? CC WFL 201 B 1 
HETATM 8 C CD WFL . . . C 2 -34.404 -11.346 22.96 1 29.07 ? CD WFL 201 B 1 
HETATM 9 O O5' WFL . . . C 2 -39.398 -11.786 21.838 1 64.5 ? O5' WFL 201 B 1 
HETATM 10 C C5' WFL . . . C 2 -38.705 -11.371 20.66 1 66.04 ? C5' WFL 201 B 1 
HETATM 11 C C4' WFL . . . C 2 -39.415 -11.829 19.381 1 66.74 ? C4' WFL 201 B 1 
HETATM 12 C C3' WFL . . . C 2 -40.265 -13.106 19.47 1 64.31 ? C3' WFL 201 B 1 
HETATM 13 O O3' WFL . . . C 2 -41.669 -12.8 19.509 1 65.41 ? O3' WFL 201 B 1 
HETATM 14 C C2' WFL . . . C 2 -39.913 -13.92 18.235 1 59.33 ? C2' WFL 201 B 1 
HETATM 15 O O2' WFL . . . C 2 -41.109 -14.434 17.623 1 61.4 ? O2' WFL 201 B 1 
HETATM 16 C C1' WFL . . . C 2 -39.142 -12.906 17.383 1 57.61 ? C1' WFL 201 B 1 
HETATM 17 O O4' WFL . . . C 2 -38.451 -12.097 18.345 1 65.25 ? O4' WFL 201 B 1 
HETATM 18 N N9 WFL . . . C 2 -38.302 -13.432 16.242 1 48.04 ? N9 WFL 201 B 1 
HETATM 19 C C4 WFL . . . C 2 -37.301 -12.774 15.6 1 42.35 ? C4 WFL 201 B 1 
HETATM 20 C C5 WFL . . . C 2 -36.858 -13.612 14.587 1 41.58 ? C5 WFL 201 B 1 
HETATM 21 N N7 WFL . . . C 2 -37.576 -14.754 14.607 1 39.54 ? N7 WFL 201 B 1 
HETATM 22 C C8 WFL . . . C 2 -38.479 -14.623 15.622 1 45.57 ? C8 WFL 201 B 1 
HETATM 23 N N3 WFL . . . C 2 -36.663 -11.566 15.757 1 38.09 ? N3 WFL 201 B 1 
HETATM 24 C C2 WFL . . . C 2 -35.643 -11.188 14.945 1 38.94 ? C2 WFL 201 B 1 
HETATM 25 N N1 WFL . . . C 2 -35.208 -11.972 13.942 1 33.74 ? N1 WFL 201 B 1 
HETATM 26 C C6 WFL . . . C 2 -35.821 -13.195 13.775 1 37.85 ? C6 WFL 201 B 1 
HETATM 27 N N6 WFL . . . C 2 -35.466 -14.154 12.764 1 33.13 ? N6 WFL 201 B 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           82 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           373 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           27 
#