data_8UB2 # _model_server_result.job_id 8GtNLxDi9t0gTPQROeGRmw _model_server_result.datetime_utc '2024-10-18 05:24:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ub2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 8UB2 # _exptl.entry_id 8UB2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.81 _cell.angle_gamma 90 _cell.entry_id 8UB2 _cell.length_a 101.054 _cell.length_b 32.514 _cell.length_c 72.935 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UB2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 84 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf2 A SG CYS 40 A CYS 40 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf3 A SG CYS 58 A CYS 58 1_555 A SG CYS 110 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? disulf ? disulf4 A SG CYS 65 A CYS 65 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf5 B SG CYS 26 B CYS 26 1_555 B SG CYS 84 B CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? disulf ? disulf6 B SG CYS 40 B CYS 40 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 B SG CYS 58 B CYS 58 1_555 B SG CYS 110 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? disulf ? disulf8 B SG CYS 65 B CYS 65 1_555 B SG CYS 72 B CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 8UB2 _atom_sites.fract_transf_matrix[1][1] 0.009896 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00014 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030756 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013712 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AMP A 1 201 201 AMP AMP . D 3 PEG A 1 202 203 PEG PEG . E 3 PEG A 1 203 204 PEG PEG . F 3 PEG B 1 201 201 PEG PEG . G 3 PEG B 1 202 202 PEG PEG . H 3 PEG B 1 203 205 PEG PEG . I 4 HOH A 1 301 66 HOH HOH . I 4 HOH A 2 302 70 HOH HOH . I 4 HOH A 3 303 39 HOH HOH . I 4 HOH A 4 304 67 HOH HOH . I 4 HOH A 5 305 37 HOH HOH . I 4 HOH A 6 306 13 HOH HOH . I 4 HOH A 7 307 21 HOH HOH . I 4 HOH A 8 308 29 HOH HOH . I 4 HOH A 9 309 101 HOH HOH . I 4 HOH A 10 310 77 HOH HOH . I 4 HOH A 11 311 15 HOH HOH . I 4 HOH A 12 312 19 HOH HOH . I 4 HOH A 13 313 10 HOH HOH . I 4 HOH A 14 314 9 HOH HOH . I 4 HOH A 15 315 33 HOH HOH . I 4 HOH A 16 316 74 HOH HOH . I 4 HOH A 17 317 20 HOH HOH . I 4 HOH A 18 318 32 HOH HOH . I 4 HOH A 19 319 3 HOH HOH . I 4 HOH A 20 320 98 HOH HOH . I 4 HOH A 21 321 14 HOH HOH . I 4 HOH A 22 322 5 HOH HOH . I 4 HOH A 23 323 63 HOH HOH . I 4 HOH A 24 324 28 HOH HOH . I 4 HOH A 25 325 4 HOH HOH . I 4 HOH A 26 326 41 HOH HOH . I 4 HOH A 27 327 40 HOH HOH . I 4 HOH A 28 328 103 HOH HOH . I 4 HOH A 29 329 7 HOH HOH . I 4 HOH A 30 330 90 HOH HOH . I 4 HOH A 31 331 69 HOH HOH . I 4 HOH A 32 332 18 HOH HOH . I 4 HOH A 33 333 16 HOH HOH . I 4 HOH A 34 334 76 HOH HOH . I 4 HOH A 35 335 68 HOH HOH . I 4 HOH A 36 336 61 HOH HOH . I 4 HOH A 37 337 17 HOH HOH . I 4 HOH A 38 338 75 HOH HOH . I 4 HOH A 39 339 72 HOH HOH . I 4 HOH A 40 340 73 HOH HOH . I 4 HOH A 41 341 2 HOH HOH . I 4 HOH A 42 342 71 HOH HOH . I 4 HOH A 43 343 6 HOH HOH . I 4 HOH A 44 344 62 HOH HOH . I 4 HOH A 45 345 11 HOH HOH . I 4 HOH A 46 346 12 HOH HOH . I 4 HOH A 47 347 65 HOH HOH . I 4 HOH A 48 348 36 HOH HOH . I 4 HOH A 49 349 8 HOH HOH . I 4 HOH A 50 350 95 HOH HOH . I 4 HOH A 51 351 38 HOH HOH . I 4 HOH A 52 352 64 HOH HOH . J 4 HOH B 1 301 102 HOH HOH . J 4 HOH B 2 302 60 HOH HOH . J 4 HOH B 3 303 49 HOH HOH . J 4 HOH B 4 304 52 HOH HOH . J 4 HOH B 5 305 93 HOH HOH . J 4 HOH B 6 306 79 HOH HOH . J 4 HOH B 7 307 54 HOH HOH . J 4 HOH B 8 308 34 HOH HOH . J 4 HOH B 9 309 92 HOH HOH . J 4 HOH B 10 310 99 HOH HOH . J 4 HOH B 11 311 48 HOH HOH . J 4 HOH B 12 312 58 HOH HOH . J 4 HOH B 13 313 44 HOH HOH . J 4 HOH B 14 314 100 HOH HOH . J 4 HOH B 15 315 22 HOH HOH . J 4 HOH B 16 316 47 HOH HOH . J 4 HOH B 17 317 59 HOH HOH . J 4 HOH B 18 318 83 HOH HOH . J 4 HOH B 19 319 27 HOH HOH . J 4 HOH B 20 320 88 HOH HOH . J 4 HOH B 21 321 1 HOH HOH . J 4 HOH B 22 322 23 HOH HOH . J 4 HOH B 23 323 84 HOH HOH . J 4 HOH B 24 324 89 HOH HOH . J 4 HOH B 25 325 31 HOH HOH . J 4 HOH B 26 326 45 HOH HOH . J 4 HOH B 27 327 43 HOH HOH . J 4 HOH B 28 328 57 HOH HOH . J 4 HOH B 29 329 87 HOH HOH . J 4 HOH B 30 330 50 HOH HOH . J 4 HOH B 31 331 56 HOH HOH . J 4 HOH B 32 332 24 HOH HOH . J 4 HOH B 33 333 81 HOH HOH . J 4 HOH B 34 334 25 HOH HOH . J 4 HOH B 35 335 55 HOH HOH . J 4 HOH B 36 336 35 HOH HOH . J 4 HOH B 37 337 42 HOH HOH . J 4 HOH B 38 338 94 HOH HOH . J 4 HOH B 39 339 51 HOH HOH . J 4 HOH B 40 340 86 HOH HOH . J 4 HOH B 41 341 85 HOH HOH . J 4 HOH B 42 342 96 HOH HOH . J 4 HOH B 43 343 91 HOH HOH . J 4 HOH B 44 344 82 HOH HOH . J 4 HOH B 45 345 80 HOH HOH . J 4 HOH B 46 346 78 HOH HOH . J 4 HOH B 47 347 46 HOH HOH . J 4 HOH B 48 348 104 HOH HOH . J 4 HOH B 49 349 53 HOH HOH . J 4 HOH B 50 350 30 HOH HOH . J 4 HOH B 51 351 97 HOH HOH . J 4 HOH B 52 352 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . C 2 7.735 -14.318 -19.582 1 54.79 ? P AMP 201 A 1 HETATM 2 O O1P AMP . . . C 2 7.938 -14.388 -21.097 1 40.71 ? O1P AMP 201 A 1 HETATM 3 O O2P AMP . . . C 2 6.589 -13.39 -19.193 1 50.66 ? O2P AMP 201 A 1 HETATM 4 O O3P AMP . . . C 2 7.662 -15.674 -18.899 1 49.55 ? O3P AMP 201 A 1 HETATM 5 O O5' AMP . . . C 2 9.103 -13.633 -19.049 1 45.53 ? O5' AMP 201 A 1 HETATM 6 C C5' AMP . . . C 2 9.309 -13.389 -17.637 1 42.2 ? C5' AMP 201 A 1 HETATM 7 C C4' AMP . . . C 2 9.922 -12.02 -17.495 1 41.35 ? C4' AMP 201 A 1 HETATM 8 O O4' AMP . . . C 2 11.362 -12.102 -17.694 1 35.03 ? O4' AMP 201 A 1 HETATM 9 C C3' AMP . . . C 2 9.435 -10.987 -18.522 1 40.25 ? C3' AMP 201 A 1 HETATM 10 O O3' AMP . . . C 2 8.352 -10.227 -17.995 1 46.22 ? O3' AMP 201 A 1 HETATM 11 C C2' AMP . . . C 2 10.653 -10.08 -18.661 1 36.23 ? C2' AMP 201 A 1 HETATM 12 O O2' AMP . . . C 2 10.564 -9.176 -17.575 1 33.73 ? O2' AMP 201 A 1 HETATM 13 C C1' AMP . . . C 2 11.823 -11.06 -18.532 1 32.75 ? C1' AMP 201 A 1 HETATM 14 N N9 AMP . . . C 2 12.334 -11.661 -19.769 1 26.07 ? N9 AMP 201 A 1 HETATM 15 C C8 AMP . . . C 2 12.047 -12.916 -20.247 1 23.62 ? C8 AMP 201 A 1 HETATM 16 N N7 AMP . . . C 2 12.737 -13.249 -21.307 1 23.49 ? N7 AMP 201 A 1 HETATM 17 C C5 AMP . . . C 2 13.533 -12.139 -21.549 1 22.47 ? C5 AMP 201 A 1 HETATM 18 C C6 AMP . . . C 2 14.453 -11.834 -22.564 1 21.77 ? C6 AMP 201 A 1 HETATM 19 N N6 AMP . . . C 2 14.701 -12.674 -23.548 1 21.06 ? N6 AMP 201 A 1 HETATM 20 N N1 AMP . . . C 2 15.092 -10.623 -22.529 1 20.95 ? N1 AMP 201 A 1 HETATM 21 C C2 AMP . . . C 2 14.79 -9.794 -21.524 1 22.71 ? C2 AMP 201 A 1 HETATM 22 N N3 AMP . . . C 2 13.919 -9.966 -20.532 1 21.53 ? N3 AMP 201 A 1 HETATM 23 C C4 AMP . . . C 2 13.303 -11.16 -20.604 1 23.98 ? C4 AMP 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #