data_8UB5 # _model_server_result.job_id F1PCp-oTQnTD3ovJhZPioQ _model_server_result.datetime_utc '2024-12-03 04:11:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ub5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":413}' # _entry.id 8UB5 # _exptl.entry_id 8UB5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.71 _cell.angle_gamma 90 _cell.entry_id 8UB5 _cell.length_a 93.436 _cell.length_b 64.492 _cell.length_c 65.747 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8UB5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 89 n n C1 C2 EDO sing 90 n n C1 H11 EDO sing 91 n n C1 H12 EDO sing 92 n n O1 HO1 EDO sing 93 n n C2 O2 EDO sing 94 n n C2 H21 EDO sing 95 n n C2 H22 EDO sing 96 n n O2 HO2 EDO sing 97 n n # _atom_sites.entry_id 8UB5 _atom_sites.fract_transf_matrix[1][1] 0.010703 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002414 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015506 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015592 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 401 1 EDO EDO . C 2 EDO A 1 402 2 EDO EDO . D 2 EDO A 1 403 4 EDO EDO . E 2 EDO A 1 404 5 EDO EDO . F 2 EDO A 1 405 6 EDO EDO . G 2 EDO A 1 406 7 EDO EDO . H 2 EDO A 1 407 8 EDO EDO . I 2 EDO A 1 408 9 EDO EDO . J 2 EDO A 1 409 10 EDO EDO . K 2 EDO A 1 410 11 EDO EDO . L 2 EDO A 1 411 12 EDO EDO . M 2 EDO A 1 412 13 EDO EDO . N 2 EDO A 1 413 14 EDO EDO . O 2 EDO A 1 414 15 EDO EDO . P 3 ACE A 1 415 1 ACE ACE . Q 3 ACE A 1 416 2 ACE ACE . R 3 ACE A 1 417 3 ACE ACE . S 3 ACE A 1 418 4 ACE ACE . T 3 ACE A 1 419 5 ACE ACE . U 3 ACE A 1 420 6 ACE ACE . V 3 ACE A 1 421 7 ACE ACE . W 3 ACE A 1 422 8 ACE ACE . X 3 ACE A 1 423 10 ACE ACE . Y 3 ACE A 1 424 11 ACE ACE . Z 3 ACE A 1 425 12 ACE ACE . AA 3 ACE A 1 426 14 ACE ACE . BA 3 ACE A 1 427 15 ACE ACE . CA 3 ACE A 1 428 16 ACE ACE . DA 4 HOH A 1 501 251 HOH HOH . DA 4 HOH A 2 502 74 HOH HOH . DA 4 HOH A 3 503 150 HOH HOH . DA 4 HOH A 4 504 107 HOH HOH . DA 4 HOH A 5 505 174 HOH HOH . DA 4 HOH A 6 506 124 HOH HOH . DA 4 HOH A 7 507 154 HOH HOH . DA 4 HOH A 8 508 270 HOH HOH . DA 4 HOH A 9 509 111 HOH HOH . DA 4 HOH A 10 510 52 HOH HOH . DA 4 HOH A 11 511 13 HOH HOH . DA 4 HOH A 12 512 177 HOH HOH . DA 4 HOH A 13 513 247 HOH HOH . DA 4 HOH A 14 514 157 HOH HOH . DA 4 HOH A 15 515 240 HOH HOH . DA 4 HOH A 16 516 147 HOH HOH . DA 4 HOH A 17 517 232 HOH HOH . DA 4 HOH A 18 518 264 HOH HOH . DA 4 HOH A 19 519 175 HOH HOH . DA 4 HOH A 20 520 258 HOH HOH . DA 4 HOH A 21 521 118 HOH HOH . DA 4 HOH A 22 522 3 HOH HOH . DA 4 HOH A 23 523 254 HOH HOH . DA 4 HOH A 24 524 77 HOH HOH . DA 4 HOH A 25 525 218 HOH HOH . DA 4 HOH A 26 526 125 HOH HOH . DA 4 HOH A 27 527 146 HOH HOH . DA 4 HOH A 28 528 195 HOH HOH . DA 4 HOH A 29 529 170 HOH HOH . DA 4 HOH A 30 530 126 HOH HOH . DA 4 HOH A 31 531 109 HOH HOH . DA 4 HOH A 32 532 86 HOH HOH . DA 4 HOH A 33 533 65 HOH HOH . DA 4 HOH A 34 534 81 HOH HOH . DA 4 HOH A 35 535 91 HOH HOH . DA 4 HOH A 36 536 24 HOH HOH . DA 4 HOH A 37 537 36 HOH HOH . DA 4 HOH A 38 538 253 HOH HOH . DA 4 HOH A 39 539 255 HOH HOH . DA 4 HOH A 40 540 239 HOH HOH . DA 4 HOH A 41 541 53 HOH HOH . DA 4 HOH A 42 542 72 HOH HOH . DA 4 HOH A 43 543 190 HOH HOH . DA 4 HOH A 44 544 103 HOH HOH . DA 4 HOH A 45 545 114 HOH HOH . DA 4 HOH A 46 546 220 HOH HOH . DA 4 HOH A 47 547 144 HOH HOH . DA 4 HOH A 48 548 134 HOH HOH . DA 4 HOH A 49 549 2 HOH HOH . DA 4 HOH A 50 550 102 HOH HOH . DA 4 HOH A 51 551 47 HOH HOH . DA 4 HOH A 52 552 200 HOH HOH . DA 4 HOH A 53 553 46 HOH HOH . DA 4 HOH A 54 554 127 HOH HOH . DA 4 HOH A 55 555 228 HOH HOH . DA 4 HOH A 56 556 153 HOH HOH . DA 4 HOH A 57 557 95 HOH HOH . DA 4 HOH A 58 558 100 HOH HOH . DA 4 HOH A 59 559 78 HOH HOH . DA 4 HOH A 60 560 97 HOH HOH . DA 4 HOH A 61 561 272 HOH HOH . DA 4 HOH A 62 562 108 HOH HOH . DA 4 HOH A 63 563 179 HOH HOH . DA 4 HOH A 64 564 96 HOH HOH . DA 4 HOH A 65 565 210 HOH HOH . DA 4 HOH A 66 566 216 HOH HOH . DA 4 HOH A 67 567 260 HOH HOH . DA 4 HOH A 68 568 183 HOH HOH . DA 4 HOH A 69 569 141 HOH HOH . DA 4 HOH A 70 570 132 HOH HOH . DA 4 HOH A 71 571 42 HOH HOH . DA 4 HOH A 72 572 83 HOH HOH . DA 4 HOH A 73 573 104 HOH HOH . DA 4 HOH A 74 574 166 HOH HOH . DA 4 HOH A 75 575 45 HOH HOH . DA 4 HOH A 76 576 8 HOH HOH . DA 4 HOH A 77 577 202 HOH HOH . DA 4 HOH A 78 578 191 HOH HOH . DA 4 HOH A 79 579 148 HOH HOH . DA 4 HOH A 80 580 89 HOH HOH . DA 4 HOH A 81 581 88 HOH HOH . DA 4 HOH A 82 582 48 HOH HOH . DA 4 HOH A 83 583 192 HOH HOH . DA 4 HOH A 84 584 90 HOH HOH . DA 4 HOH A 85 585 187 HOH HOH . DA 4 HOH A 86 586 184 HOH HOH . DA 4 HOH A 87 587 29 HOH HOH . DA 4 HOH A 88 588 237 HOH HOH . DA 4 HOH A 89 589 105 HOH HOH . DA 4 HOH A 90 590 164 HOH HOH . DA 4 HOH A 91 591 181 HOH HOH . DA 4 HOH A 92 592 7 HOH HOH . DA 4 HOH A 93 593 1 HOH HOH . DA 4 HOH A 94 594 10 HOH HOH . DA 4 HOH A 95 595 217 HOH HOH . DA 4 HOH A 96 596 155 HOH HOH . DA 4 HOH A 97 597 152 HOH HOH . DA 4 HOH A 98 598 262 HOH HOH . DA 4 HOH A 99 599 233 HOH HOH . DA 4 HOH A 100 600 168 HOH HOH . DA 4 HOH A 101 601 55 HOH HOH . DA 4 HOH A 102 602 20 HOH HOH . DA 4 HOH A 103 603 238 HOH HOH . DA 4 HOH A 104 604 98 HOH HOH . DA 4 HOH A 105 605 49 HOH HOH . DA 4 HOH A 106 606 25 HOH HOH . DA 4 HOH A 107 607 32 HOH HOH . DA 4 HOH A 108 608 21 HOH HOH . DA 4 HOH A 109 609 34 HOH HOH . DA 4 HOH A 110 610 93 HOH HOH . DA 4 HOH A 111 611 87 HOH HOH . DA 4 HOH A 112 612 227 HOH HOH . DA 4 HOH A 113 613 19 HOH HOH . DA 4 HOH A 114 614 143 HOH HOH . DA 4 HOH A 115 615 117 HOH HOH . DA 4 HOH A 116 616 161 HOH HOH . DA 4 HOH A 117 617 27 HOH HOH . DA 4 HOH A 118 618 193 HOH HOH . DA 4 HOH A 119 619 11 HOH HOH . DA 4 HOH A 120 620 41 HOH HOH . DA 4 HOH A 121 621 224 HOH HOH . DA 4 HOH A 122 622 120 HOH HOH . DA 4 HOH A 123 623 131 HOH HOH . DA 4 HOH A 124 624 176 HOH HOH . DA 4 HOH A 125 625 38 HOH HOH . DA 4 HOH A 126 626 30 HOH HOH . DA 4 HOH A 127 627 129 HOH HOH . DA 4 HOH A 128 628 167 HOH HOH . DA 4 HOH A 129 629 137 HOH HOH . DA 4 HOH A 130 630 130 HOH HOH . DA 4 HOH A 131 631 212 HOH HOH . DA 4 HOH A 132 632 123 HOH HOH . DA 4 HOH A 133 633 62 HOH HOH . DA 4 HOH A 134 634 163 HOH HOH . DA 4 HOH A 135 635 92 HOH HOH . DA 4 HOH A 136 636 266 HOH HOH . DA 4 HOH A 137 637 37 HOH HOH . DA 4 HOH A 138 638 159 HOH HOH . DA 4 HOH A 139 639 145 HOH HOH . DA 4 HOH A 140 640 158 HOH HOH . DA 4 HOH A 141 641 23 HOH HOH . DA 4 HOH A 142 642 101 HOH HOH . DA 4 HOH A 143 643 243 HOH HOH . DA 4 HOH A 144 644 99 HOH HOH . DA 4 HOH A 145 645 205 HOH HOH . DA 4 HOH A 146 646 112 HOH HOH . DA 4 HOH A 147 647 9 HOH HOH . DA 4 HOH A 148 648 225 HOH HOH . DA 4 HOH A 149 649 139 HOH HOH . DA 4 HOH A 150 650 4 HOH HOH . DA 4 HOH A 151 651 142 HOH HOH . DA 4 HOH A 152 652 66 HOH HOH . DA 4 HOH A 153 653 165 HOH HOH . DA 4 HOH A 154 654 274 HOH HOH . DA 4 HOH A 155 655 94 HOH HOH . DA 4 HOH A 156 656 43 HOH HOH . DA 4 HOH A 157 657 5 HOH HOH . DA 4 HOH A 158 658 115 HOH HOH . DA 4 HOH A 159 659 75 HOH HOH . DA 4 HOH A 160 660 201 HOH HOH . DA 4 HOH A 161 661 106 HOH HOH . DA 4 HOH A 162 662 39 HOH HOH . DA 4 HOH A 163 663 242 HOH HOH . DA 4 HOH A 164 664 267 HOH HOH . DA 4 HOH A 165 665 241 HOH HOH . DA 4 HOH A 166 666 6 HOH HOH . DA 4 HOH A 167 667 180 HOH HOH . DA 4 HOH A 168 668 173 HOH HOH . DA 4 HOH A 169 669 138 HOH HOH . DA 4 HOH A 170 670 58 HOH HOH . DA 4 HOH A 171 671 135 HOH HOH . DA 4 HOH A 172 672 35 HOH HOH . DA 4 HOH A 173 673 121 HOH HOH . DA 4 HOH A 174 674 82 HOH HOH . DA 4 HOH A 175 675 18 HOH HOH . DA 4 HOH A 176 676 57 HOH HOH . DA 4 HOH A 177 677 116 HOH HOH . DA 4 HOH A 178 678 68 HOH HOH . DA 4 HOH A 179 679 206 HOH HOH . DA 4 HOH A 180 680 221 HOH HOH . DA 4 HOH A 181 681 133 HOH HOH . DA 4 HOH A 182 682 172 HOH HOH . DA 4 HOH A 183 683 15 HOH HOH . DA 4 HOH A 184 684 214 HOH HOH . DA 4 HOH A 185 685 273 HOH HOH . DA 4 HOH A 186 686 128 HOH HOH . DA 4 HOH A 187 687 22 HOH HOH . DA 4 HOH A 188 688 17 HOH HOH . DA 4 HOH A 189 689 269 HOH HOH . DA 4 HOH A 190 690 265 HOH HOH . DA 4 HOH A 191 691 209 HOH HOH . DA 4 HOH A 192 692 28 HOH HOH . DA 4 HOH A 193 693 271 HOH HOH . DA 4 HOH A 194 694 84 HOH HOH . DA 4 HOH A 195 695 156 HOH HOH . DA 4 HOH A 196 696 31 HOH HOH . DA 4 HOH A 197 697 198 HOH HOH . DA 4 HOH A 198 698 122 HOH HOH . DA 4 HOH A 199 699 71 HOH HOH . DA 4 HOH A 200 700 203 HOH HOH . DA 4 HOH A 201 701 188 HOH HOH . DA 4 HOH A 202 702 16 HOH HOH . DA 4 HOH A 203 703 26 HOH HOH . DA 4 HOH A 204 704 73 HOH HOH . DA 4 HOH A 205 705 245 HOH HOH . DA 4 HOH A 206 706 235 HOH HOH . DA 4 HOH A 207 707 85 HOH HOH . DA 4 HOH A 208 708 263 HOH HOH . DA 4 HOH A 209 709 149 HOH HOH . DA 4 HOH A 210 710 40 HOH HOH . DA 4 HOH A 211 711 213 HOH HOH . DA 4 HOH A 212 712 226 HOH HOH . DA 4 HOH A 213 713 252 HOH HOH . DA 4 HOH A 214 714 151 HOH HOH . DA 4 HOH A 215 715 113 HOH HOH . DA 4 HOH A 216 716 63 HOH HOH . DA 4 HOH A 217 717 178 HOH HOH . DA 4 HOH A 218 718 79 HOH HOH . DA 4 HOH A 219 719 197 HOH HOH . DA 4 HOH A 220 720 14 HOH HOH . DA 4 HOH A 221 721 56 HOH HOH . DA 4 HOH A 222 722 199 HOH HOH . DA 4 HOH A 223 723 60 HOH HOH . DA 4 HOH A 224 724 51 HOH HOH . DA 4 HOH A 225 725 249 HOH HOH . DA 4 HOH A 226 726 236 HOH HOH . DA 4 HOH A 227 727 169 HOH HOH . DA 4 HOH A 228 728 80 HOH HOH . DA 4 HOH A 229 729 250 HOH HOH . DA 4 HOH A 230 730 12 HOH HOH . DA 4 HOH A 231 731 185 HOH HOH . DA 4 HOH A 232 732 54 HOH HOH . DA 4 HOH A 233 733 234 HOH HOH . DA 4 HOH A 234 734 194 HOH HOH . DA 4 HOH A 235 735 33 HOH HOH . DA 4 HOH A 236 736 208 HOH HOH . DA 4 HOH A 237 737 259 HOH HOH . DA 4 HOH A 238 738 119 HOH HOH . DA 4 HOH A 239 739 244 HOH HOH . DA 4 HOH A 240 740 257 HOH HOH . DA 4 HOH A 241 741 44 HOH HOH . DA 4 HOH A 242 742 69 HOH HOH . DA 4 HOH A 243 743 182 HOH HOH . DA 4 HOH A 244 744 171 HOH HOH . DA 4 HOH A 245 745 196 HOH HOH . DA 4 HOH A 246 746 211 HOH HOH . DA 4 HOH A 247 747 223 HOH HOH . DA 4 HOH A 248 748 256 HOH HOH . DA 4 HOH A 249 749 50 HOH HOH . DA 4 HOH A 250 750 222 HOH HOH . DA 4 HOH A 251 751 204 HOH HOH . DA 4 HOH A 252 752 162 HOH HOH . DA 4 HOH A 253 753 189 HOH HOH . DA 4 HOH A 254 754 61 HOH HOH . DA 4 HOH A 255 755 268 HOH HOH . DA 4 HOH A 256 756 136 HOH HOH . DA 4 HOH A 257 757 248 HOH HOH . DA 4 HOH A 258 758 186 HOH HOH . DA 4 HOH A 259 759 67 HOH HOH . DA 4 HOH A 260 760 219 HOH HOH . DA 4 HOH A 261 761 76 HOH HOH . DA 4 HOH A 262 762 70 HOH HOH . DA 4 HOH A 263 763 215 HOH HOH . DA 4 HOH A 264 764 230 HOH HOH . DA 4 HOH A 265 765 140 HOH HOH . DA 4 HOH A 266 766 110 HOH HOH . DA 4 HOH A 267 767 246 HOH HOH . DA 4 HOH A 268 768 229 HOH HOH . DA 4 HOH A 269 769 261 HOH HOH . DA 4 HOH A 270 770 64 HOH HOH . DA 4 HOH A 271 771 59 HOH HOH . DA 4 HOH A 272 772 160 HOH HOH . DA 4 HOH A 273 773 207 HOH HOH . DA 4 HOH A 274 774 231 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . N 2 14.734 53.657 51.227 1 29.92 ? C1 EDO 413 A 1 HETATM 2 O O1 EDO . . . N 2 14.89 52.242 51.302 1 30.15 ? O1 EDO 413 A 1 HETATM 3 C C2 EDO . . . N 2 15.446 54.112 49.964 1 34.83 ? C2 EDO 413 A 1 HETATM 4 O O2 EDO . . . N 2 16.761 53.561 50.046 1 36.61 ? O2 EDO 413 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 4 #