data_8UBZ
#
_model_server_result.job_id            jZLdx9NgmvyKyZAJraVUpw 
_model_server_result.datetime_utc      '2025-04-10 14:10:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ubz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":602}' 
#
_entry.id    8UBZ 
#
_exptl.entry_id    8UBZ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8UBZ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8UBZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CBA Y01 sing 396 n n 
CBA CAB Y01 sing 397 n n 
CBA CAN Y01 sing 398 n n 
CAN CAJ Y01 sing 399 n n 
CAJ CAO Y01 sing 400 n n 
CAO CBB Y01 sing 401 n n 
CBB CAC Y01 sing 402 n n 
CBB CBE Y01 sing 403 n n 
CBE CAP Y01 sing 404 n n 
CBE CBI Y01 sing 405 n n 
CAP CAQ Y01 sing 406 n n 
CAQ CBG Y01 sing 407 n n 
CBG CBI Y01 sing 408 n n 
CBG CBD Y01 sing 409 n n 
CBI CAE Y01 sing 410 n n 
CBI CAU Y01 sing 411 n n 
CAU CAS Y01 sing 412 n n 
CAS CBF Y01 sing 413 n n 
CBF CBD Y01 sing 414 n n 
CBF CBH Y01 sing 415 n n 
CBD CAK Y01 sing 416 n n 
CAK CAI Y01 sing 417 n n 
CAI CAZ Y01 doub 418 n n 
CAZ CAV Y01 sing 419 n n 
CAZ CBH Y01 sing 420 n n 
CAV CBC Y01 sing 421 n n 
CBH CAD Y01 sing 422 n n 
CBH CAT Y01 sing 423 n n 
CAT CAR Y01 sing 424 n n 
CAR CBC Y01 sing 425 n n 
CBC OAW Y01 sing 426 n n 
OAW CAY Y01 sing 427 n n 
CAY OAG Y01 doub 428 n n 
CAY CAM Y01 sing 429 n n 
CAM CAL Y01 sing 430 n n 
CAL CAX Y01 sing 431 n n 
CAX OAH Y01 sing 432 n n 
CAX OAF Y01 doub 433 n n 
CAA HAA1 Y01 sing 434 n n 
CAA HAA2 Y01 sing 435 n n 
CAA HAA3 Y01 sing 436 n n 
CBA HBA Y01 sing 437 n n 
CAB HAB1 Y01 sing 438 n n 
CAB HAB2 Y01 sing 439 n n 
CAB HAB3 Y01 sing 440 n n 
CAN HAN1 Y01 sing 441 n n 
CAN HAN2 Y01 sing 442 n n 
CAJ HAJ1 Y01 sing 443 n n 
CAJ HAJ2 Y01 sing 444 n n 
CAO HAO1 Y01 sing 445 n n 
CAO HAO2 Y01 sing 446 n n 
CBB HBB Y01 sing 447 n n 
CAC HAC1 Y01 sing 448 n n 
CAC HAC2 Y01 sing 449 n n 
CAC HAC3 Y01 sing 450 n n 
CBE HBE Y01 sing 451 n n 
CAP HAP1 Y01 sing 452 n n 
CAP HAP2 Y01 sing 453 n n 
CAQ HAQ1 Y01 sing 454 n n 
CAQ HAQ2 Y01 sing 455 n n 
CBG HBG Y01 sing 456 n n 
CBD HBD Y01 sing 457 n n 
CAE HAE1 Y01 sing 458 n n 
CAE HAE2 Y01 sing 459 n n 
CAE HAE3 Y01 sing 460 n n 
CAU HAU1 Y01 sing 461 n n 
CAU HAU2 Y01 sing 462 n n 
CAS HAS1 Y01 sing 463 n n 
CAS HAS2 Y01 sing 464 n n 
CBF HBF Y01 sing 465 n n 
CAK HAK1 Y01 sing 466 n n 
CAK HAK2 Y01 sing 467 n n 
CAI HAI Y01 sing 468 n n 
CAV HAV1 Y01 sing 469 n n 
CAV HAV2 Y01 sing 470 n n 
CBC HBC Y01 sing 471 n n 
CAD HAD1 Y01 sing 472 n n 
CAD HAD2 Y01 sing 473 n n 
CAD HAD3 Y01 sing 474 n n 
CAT HAT1 Y01 sing 475 n n 
CAT HAT2 Y01 sing 476 n n 
CAR HAR1 Y01 sing 477 n n 
CAR HAR2 Y01 sing 478 n n 
CAM HAM1 Y01 sing 479 n n 
CAM HAM2 Y01 sing 480 n n 
CAL HAL1 Y01 sing 481 n n 
CAL HAL2 Y01 sing 482 n n 
OAH HAH Y01 sing 483 n n 
#
_atom_sites.entry_id                     8UBZ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 Y01 A 1 601 602 Y01 Y01 . 
C 2 Y01 A 1 602 603 Y01 Y01 . 
D 2 Y01 A 1 603 604 Y01 Y01 . 
E 3 CHT A 1 604 605 CHT CHT . 
F 4 HOH A 1 701 804 HOH HOH . 
F 4 HOH A 2 702 803 HOH HOH . 
F 4 HOH A 3 703 819 HOH HOH . 
F 4 HOH A 4 704 824 HOH HOH . 
F 4 HOH A 5 705 830 HOH HOH . 
F 4 HOH A 6 706 807 HOH HOH . 
F 4 HOH A 7 707 820 HOH HOH . 
F 4 HOH A 8 708 827 HOH HOH . 
F 4 HOH A 9 709 817 HOH HOH . 
F 4 HOH A 10 710 808 HOH HOH . 
F 4 HOH A 11 711 821 HOH HOH . 
F 4 HOH A 12 712 828 HOH HOH . 
F 4 HOH A 13 713 806 HOH HOH . 
F 4 HOH A 14 714 831 HOH HOH . 
F 4 HOH A 15 715 811 HOH HOH . 
F 4 HOH A 16 716 826 HOH HOH . 
F 4 HOH A 17 717 812 HOH HOH . 
F 4 HOH A 18 718 823 HOH HOH . 
F 4 HOH A 19 719 813 HOH HOH . 
F 4 HOH A 20 720 814 HOH HOH . 
F 4 HOH A 21 721 805 HOH HOH . 
F 4 HOH A 22 722 822 HOH HOH . 
F 4 HOH A 23 723 809 HOH HOH . 
F 4 HOH A 24 724 800 HOH HOH . 
F 4 HOH A 25 725 829 HOH HOH . 
F 4 HOH A 26 726 825 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . C 2 165.952 175.184 151.441 1 79.94 ? CAA Y01 602 A 1 
HETATM 2 C CBA Y01 . . . C 2 167.238 174.937 152.225 1 85.98 ? CBA Y01 602 A 1 
HETATM 3 C CAB Y01 . . . C 2 167.526 173.441 152.305 1 79.3 ? CAB Y01 602 A 1 
HETATM 4 C CAN Y01 . . . C 2 167.181 175.546 153.628 1 86.71 ? CAN Y01 602 A 1 
HETATM 5 C CAJ Y01 . . . C 2 168.488 175.51 154.411 1 81.26 ? CAJ Y01 602 A 1 
HETATM 6 C CAO Y01 . . . C 2 168.405 176.317 155.704 1 82.07 ? CAO Y01 602 A 1 
HETATM 7 C CBB Y01 . . . C 2 169.653 176.234 156.596 1 81.38 ? CBB Y01 602 A 1 
HETATM 8 C CAC Y01 . . . C 2 170.712 177.207 156.084 1 81.23 ? CAC Y01 602 A 1 
HETATM 9 C CBE Y01 . . . C 2 169.288 176.453 158.073 1 82.65 ? CBE Y01 602 A 1 
HETATM 10 C CAP Y01 . . . C 2 168.381 175.319 158.626 1 80.36 ? CAP Y01 602 A 1 
HETATM 11 C CAQ Y01 . . . C 2 168.704 175.161 160.124 1 83.55 ? CAQ Y01 602 A 1 
HETATM 12 C CBG Y01 . . . C 2 169.612 176.346 160.421 1 84.16 ? CBG Y01 602 A 1 
HETATM 13 C CBI Y01 . . . C 2 170.421 176.549 159.129 1 84.23 ? CBI Y01 602 A 1 
HETATM 14 C CAE Y01 . . . C 2 171.447 175.433 158.898 1 77.35 ? CAE Y01 602 A 1 
HETATM 15 C CAU Y01 . . . C 2 171.109 177.908 159.276 1 82.99 ? CAU Y01 602 A 1 
HETATM 16 C CAS Y01 . . . C 2 171.986 177.967 160.529 1 82.43 ? CAS Y01 602 A 1 
HETATM 17 C CBF Y01 . . . C 2 171.25 177.616 161.83 1 82.87 ? CBF Y01 602 A 1 
HETATM 18 C CBD Y01 . . . C 2 170.429 176.323 161.703 1 85.32 ? CBD Y01 602 A 1 
HETATM 19 C CAK Y01 . . . C 2 169.511 176.185 162.913 1 80.27 ? CAK Y01 602 A 1 
HETATM 20 C CAI Y01 . . . C 2 170.182 176.548 164.196 1 80.95 ? CAI Y01 602 A 1 
HETATM 21 C CAZ Y01 . . . C 2 171.371 177.142 164.294 1 82.95 ? CAZ Y01 602 A 1 
HETATM 22 C CAV Y01 . . . C 2 172.011 177.336 165.645 1 79.64 ? CAV Y01 602 A 1 
HETATM 23 C CBH Y01 . . . C 2 172.166 177.599 163.083 1 86.59 ? CBH Y01 602 A 1 
HETATM 24 C CAD Y01 . . . C 2 173.372 176.659 162.912 1 78.05 ? CAD Y01 602 A 1 
HETATM 25 C CAT Y01 . . . C 2 172.665 179.033 163.363 1 85.98 ? CAT Y01 602 A 1 
HETATM 26 C CAR Y01 . . . C 2 173.394 179.196 164.691 1 83.15 ? CAR Y01 602 A 1 
HETATM 27 C CBC Y01 . . . C 2 172.501 178.766 165.838 1 79.33 ? CBC Y01 602 A 1 
HETATM 28 O OAW Y01 . . . C 2 173.28 178.866 167.043 1 82.92 ? OAW Y01 602 A 1 
HETATM 29 C CAY Y01 . . . C 2 173.575 180.066 167.54 1 84.26 ? CAY Y01 602 A 1 
HETATM 30 O OAG Y01 . . . C 2 172.808 180.999 167.527 1 83.17 ? OAG Y01 602 A 1 
HETATM 31 C CAM Y01 . . . C 2 174.971 180.091 168.101 1 82.57 ? CAM Y01 602 A 1 
HETATM 32 C CAL Y01 . . . C 2 176.027 179.612 167.124 1 82.87 ? CAL Y01 602 A 1 
HETATM 33 C CAX Y01 . . . C 2 177.47 179.667 167.658 1 85 ? CAX Y01 602 A 1 
HETATM 34 O OAH Y01 . . . C 2 177.706 178.948 168.651 1 85.16 ? OAH Y01 602 A 1 
HETATM 35 O OAF Y01 . . . C 2 178.282 180.41 167.072 1 84.03 ? OAF Y01 602 A 1 
HETATM 36 H HAA1 Y01 . . . C 2 165.691 176.118 151.446 1 80.12 ? HAA1 Y01 602 A 1 
HETATM 37 H HAA2 Y01 . . . C 2 165.218 174.672 151.815 1 79.08 ? HAA2 Y01 602 A 1 
HETATM 38 H HAA3 Y01 . . . C 2 166.053 174.919 150.514 1 79.76 ? HAA3 Y01 602 A 1 
HETATM 39 H HBA Y01 . . . C 2 167.969 175.358 151.746 1 80.81 ? HBA Y01 602 A 1 
HETATM 40 H HAB1 Y01 . . . C 2 168.37 173.274 152.753 1 79.12 ? HAB1 Y01 602 A 1 
HETATM 41 H HAB2 Y01 . . . C 2 167.58 173.043 151.422 1 78.33 ? HAB2 Y01 602 A 1 
HETATM 42 H HAB3 Y01 . . . C 2 166.836 172.972 152.799 1 78.34 ? HAB3 Y01 602 A 1 
HETATM 43 H HAN1 Y01 . . . C 2 166.5 175.081 154.139 1 80.26 ? HAN1 Y01 602 A 1 
HETATM 44 H HAN2 Y01 . . . C 2 166.877 176.464 153.556 1 80.4 ? HAN2 Y01 602 A 1 
HETATM 45 H HAJ1 Y01 . . . C 2 169.21 175.866 153.869 1 80.22 ? HAJ1 Y01 602 A 1 
HETATM 46 H HAJ2 Y01 . . . C 2 168.72 174.587 154.598 1 79.25 ? HAJ2 Y01 602 A 1 
HETATM 47 H HAO1 Y01 . . . C 2 167.626 176.039 156.21 1 80.16 ? HAO1 Y01 602 A 1 
HETATM 48 H HAO2 Y01 . . . C 2 168.243 177.241 155.46 1 80.26 ? HAO2 Y01 602 A 1 
HETATM 49 H HBB Y01 . . . C 2 170.006 175.335 156.512 1 79.63 ? HBB Y01 602 A 1 
HETATM 50 H HAC1 Y01 . . . C 2 171.609 176.941 156.341 1 79.82 ? HAC1 Y01 602 A 1 
HETATM 51 H HAC2 Y01 . . . C 2 170.574 178.1 156.436 1 80.03 ? HAC2 Y01 602 A 1 
HETATM 52 H HAC3 Y01 . . . C 2 170.691 177.266 155.116 1 80.08 ? HAC3 Y01 602 A 1 
HETATM 53 H HBE Y01 . . . C 2 168.798 177.288 158.125 1 80.52 ? HBE Y01 602 A 1 
HETATM 54 H HAP1 Y01 . . . C 2 168.528 174.489 158.146 1 79.13 ? HAP1 Y01 602 A 1 
HETATM 55 H HAP2 Y01 . . . C 2 167.448 175.547 158.493 1 79.64 ? HAP2 Y01 602 A 1 
HETATM 56 H HAQ1 Y01 . . . C 2 169.13 174.311 160.32 1 79.5 ? HAQ1 Y01 602 A 1 
HETATM 57 H HAQ2 Y01 . . . C 2 167.9 175.199 160.665 1 79.66 ? HAQ2 Y01 602 A 1 
HETATM 58 H HBG Y01 . . . C 2 169.037 177.124 160.493 1 80.16 ? HBG Y01 602 A 1 
HETATM 59 H HBD Y01 . . . C 2 171.029 175.562 161.691 1 80.62 ? HBD Y01 602 A 1 
HETATM 60 H HAE1 Y01 . . . C 2 172.037 175.339 159.662 1 79.24 ? HAE1 Y01 602 A 1 
HETATM 61 H HAE2 Y01 . . . C 2 172.012 175.598 158.128 1 79.23 ? HAE2 Y01 602 A 1 
HETATM 62 H HAE3 Y01 . . . C 2 171.027 174.57 158.758 1 79.24 ? HAE3 Y01 602 A 1 
HETATM 63 H HAU1 Y01 . . . C 2 170.471 178.638 159.309 1 80.07 ? HAU1 Y01 602 A 1 
HETATM 64 H HAU2 Y01 . . . C 2 171.656 178.064 158.491 1 80.32 ? HAU2 Y01 602 A 1 
HETATM 65 H HAS1 Y01 . . . C 2 172.364 178.857 160.595 1 80.25 ? HAS1 Y01 602 A 1 
HETATM 66 H HAS2 Y01 . . . C 2 172.742 177.373 160.404 1 80.08 ? HAS2 Y01 602 A 1 
HETATM 67 H HBF Y01 . . . C 2 170.602 178.321 161.983 1 79.8 ? HBF Y01 602 A 1 
HETATM 68 H HAK1 Y01 . . . C 2 169.183 175.274 162.971 1 78.74 ? HAK1 Y01 602 A 1 
HETATM 69 H HAK2 Y01 . . . C 2 168.719 176.734 162.8 1 79.01 ? HAK2 Y01 602 A 1 
HETATM 70 H HAI Y01 . . . C 2 169.69 176.41 164.974 1 79.41 ? HAI Y01 602 A 1 
HETATM 71 H HAV1 Y01 . . . C 2 172.741 176.707 165.749 1 79.62 ? HAV1 Y01 602 A 1 
HETATM 72 H HAV2 Y01 . . . C 2 171.371 177.139 166.348 1 79.62 ? HAV2 Y01 602 A 1 
HETATM 73 H HBC Y01 . . . C 2 171.742 179.367 165.894 1 79.75 ? HBC Y01 602 A 1 
HETATM 74 H HAD1 Y01 . . . C 2 173.849 176.536 163.748 1 79.46 ? HAD1 Y01 602 A 1 
HETATM 75 H HAD2 Y01 . . . C 2 174.012 177.011 162.275 1 78.99 ? HAD2 Y01 602 A 1 
HETATM 76 H HAD3 Y01 . . . C 2 173.099 175.786 162.592 1 78.78 ? HAD3 Y01 602 A 1 
HETATM 77 H HAT1 Y01 . . . C 2 171.917 179.65 163.342 1 80.31 ? HAT1 Y01 602 A 1 
HETATM 78 H HAT2 Y01 . . . C 2 173.261 179.301 162.647 1 80.54 ? HAT2 Y01 602 A 1 
HETATM 79 H HAR1 Y01 . . . C 2 173.672 180.117 164.814 1 80.51 ? HAR1 Y01 602 A 1 
HETATM 80 H HAR2 Y01 . . . C 2 174.203 178.659 164.681 1 80.07 ? HAR2 Y01 602 A 1 
HETATM 81 H HAM1 Y01 . . . C 2 174.973 179.545 168.902 1 80.19 ? HAM1 Y01 602 A 1 
HETATM 82 H HAM2 Y01 . . . C 2 175.164 180.991 168.407 1 80.03 ? HAM2 Y01 602 A 1 
HETATM 83 H HAL1 Y01 . . . C 2 175.989 180.138 166.31 1 80.03 ? HAL1 Y01 602 A 1 
HETATM 84 H HAL2 Y01 . . . C 2 175.84 178.701 166.846 1 80.25 ? HAL2 Y01 602 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           376 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           84 
#