data_8UCD
#
_model_server_result.job_id            URhA2bCN4QZfPT_S4ZpOAQ 
_model_server_result.datetime_utc      '2025-04-04 19:19:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ucd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":401}' 
#
_entry.id    8UCD 
#
_exptl.entry_id    8UCD 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8UCD 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8UCD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 H N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 22 H CYS 22 1_555 D SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 E SG CYS 23 L CYS 144 1_555 E SG CYS 87 L CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc1 A NE2 HIS 268 A HIS 268 1_555 I FE HEM . A HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc2 B NE2 HIS 175 B HIS 175 1_555 L FE HEM . B HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc3 C NE2 HIS 175 C HIS 175 1_555 N FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                LBN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(2R)-2-[(9Z)-9-Octadecenoyloxy]-3-(palmitoyloxy)propyl 2-(trimethylammonio)ethyl phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C12 N1 LBN sing 346 n n 
O3 P1 LBN sing 347 n n 
O2 C9 LBN sing 348 n n 
O2 P1 LBN sing 349 n n 
C9 C6 LBN sing 350 n n 
O4 P1 LBN doub 351 n n 
P1 O1 LBN sing 352 n n 
C6 N1 LBN sing 353 n n 
N1 C15 LBN sing 354 n n 
N1 C18 LBN sing 355 n n 
O1 C1 LBN sing 356 n n 
C2 C1 LBN sing 357 n n 
C2 C3 LBN sing 358 n n 
C2 O7 LBN sing 359 n n 
C3 O5 LBN sing 360 n n 
O6 C25 LBN doub 361 n n 
O5 C25 LBN sing 362 n n 
O7 C34 LBN sing 363 n n 
C25 C26 LBN sing 364 n n 
C34 C35 LBN sing 365 n n 
C34 O8 LBN doub 366 n n 
C26 C27 LBN sing 367 n n 
C35 C36 LBN sing 368 n n 
C27 C28 LBN sing 369 n n 
C36 C37 LBN sing 370 n n 
C28 C29 LBN sing 371 n n 
C37 C38 LBN sing 372 n n 
C29 C30 LBN sing 373 n n 
C39 C38 LBN sing 374 n n 
C39 C40 LBN sing 375 n n 
C41 C40 LBN sing 376 n n 
C41 C42 LBN sing 377 n n 
C30 C31 LBN sing 378 n n 
C42 C5 LBN doub 379 z n 
C31 C32 LBN sing 380 n n 
C5 C8 LBN sing 381 n n 
C8 C11 LBN sing 382 n n 
C32 C33 LBN sing 383 n n 
C11 C14 LBN sing 384 n n 
C33 C4 LBN sing 385 n n 
C14 C17 LBN sing 386 n n 
C4 C7 LBN sing 387 n n 
C17 C20 LBN sing 388 n n 
C7 C10 LBN sing 389 n n 
C20 C22 LBN sing 390 n n 
C10 C13 LBN sing 391 n n 
C22 C23 LBN sing 392 n n 
C13 C16 LBN sing 393 n n 
C23 C24 LBN sing 394 n n 
C16 C19 LBN sing 395 n n 
C19 C21 LBN sing 396 n n 
C1 H1 LBN sing 397 n n 
C1 H2 LBN sing 398 n n 
C2 H3 LBN sing 399 n n 
C3 H4 LBN sing 400 n n 
C3 H5 LBN sing 401 n n 
C4 H6 LBN sing 402 n n 
C4 H7 LBN sing 403 n n 
C5 H8 LBN sing 404 n n 
C6 H9 LBN sing 405 n n 
C6 H10 LBN sing 406 n n 
C7 H11 LBN sing 407 n n 
C7 H12 LBN sing 408 n n 
C8 H13 LBN sing 409 n n 
C8 H14 LBN sing 410 n n 
C9 H15 LBN sing 411 n n 
C9 H16 LBN sing 412 n n 
C10 H17 LBN sing 413 n n 
C10 H18 LBN sing 414 n n 
C11 H19 LBN sing 415 n n 
C12 H20 LBN sing 416 n n 
C12 H21 LBN sing 417 n n 
C12 H22 LBN sing 418 n n 
C13 H23 LBN sing 419 n n 
C13 H24 LBN sing 420 n n 
C14 H25 LBN sing 421 n n 
C15 H26 LBN sing 422 n n 
C15 H27 LBN sing 423 n n 
C15 H28 LBN sing 424 n n 
C16 H30 LBN sing 425 n n 
C16 H31 LBN sing 426 n n 
C17 H32 LBN sing 427 n n 
C17 H33 LBN sing 428 n n 
C18 H34 LBN sing 429 n n 
C18 H35 LBN sing 430 n n 
C18 H36 LBN sing 431 n n 
C19 H37 LBN sing 432 n n 
C19 H38 LBN sing 433 n n 
C20 H39 LBN sing 434 n n 
C20 H40 LBN sing 435 n n 
C21 H41 LBN sing 436 n n 
C21 H42 LBN sing 437 n n 
C21 H43 LBN sing 438 n n 
C22 H44 LBN sing 439 n n 
C22 H45 LBN sing 440 n n 
C23 H46 LBN sing 441 n n 
C23 H47 LBN sing 442 n n 
C24 H48 LBN sing 443 n n 
C24 H49 LBN sing 444 n n 
C24 H50 LBN sing 445 n n 
C26 H51 LBN sing 446 n n 
C26 H52 LBN sing 447 n n 
C27 H53 LBN sing 448 n n 
C27 H54 LBN sing 449 n n 
C28 H55 LBN sing 450 n n 
C28 H56 LBN sing 451 n n 
C29 H57 LBN sing 452 n n 
C29 H58 LBN sing 453 n n 
C30 H59 LBN sing 454 n n 
C30 H60 LBN sing 455 n n 
C31 H61 LBN sing 456 n n 
C31 H62 LBN sing 457 n n 
C32 H63 LBN sing 458 n n 
C32 H64 LBN sing 459 n n 
C33 H65 LBN sing 460 n n 
C33 H66 LBN sing 461 n n 
C35 H67 LBN sing 462 n n 
C35 H68 LBN sing 463 n n 
C36 H69 LBN sing 464 n n 
C36 H70 LBN sing 465 n n 
C37 H71 LBN sing 466 n n 
C37 H72 LBN sing 467 n n 
C38 H73 LBN sing 468 n n 
C38 H74 LBN sing 469 n n 
C39 H75 LBN sing 470 n n 
C40 H76 LBN sing 471 n n 
C41 H77 LBN sing 472 n n 
C41 H78 LBN sing 473 n n 
C42 H79 LBN sing 474 n n 
C11 H80 LBN sing 475 n n 
C14 H81 LBN sing 476 n n 
C39 H82 LBN sing 477 n n 
C40 H83 LBN sing 478 n n 
#
_atom_sites.entry_id                     8UCD 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 4 LBN A 1 401 401 LBN LBN . 
G 5 FAD A 1 402 402 FAD FAD . 
H 4 LBN A 1 403 401 LBN LBN . 
I 6 HEM A 1 404 401 HEM HEM . 
J 4 LBN B 1 401 401 LBN LBN . 
K 5 FAD B 1 402 402 FAD FAD . 
L 6 HEM B 1 403 401 HEM HEM . 
M 5 FAD C 1 401 402 FAD FAD . 
N 6 HEM C 1 402 401 HEM HEM . 
O 7 HOH C 1 501 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LBN . . . F 4 181.956 198.401 229.18 1 39.4 ? C1 LBN 401 A 1 
HETATM 2 N N1 LBN . . . F 4 178.115 197.022 232.045 1 39.4 ? N1 LBN 401 A 1 
HETATM 3 P P1 LBN . . . F 4 182.304 198.615 231.825 1 39.4 ? P1 LBN 401 A 1 
HETATM 4 C C2 LBN . . . F 4 181.735 199.255 227.916 1 39.4 ? C2 LBN 401 A 1 
HETATM 5 C C3 LBN . . . F 4 182.387 200.646 228.104 1 39.4 ? C3 LBN 401 A 1 
HETATM 6 C C4 LBN . . . F 4 186.62 198.961 218.177 1 39.4 ? C4 LBN 401 A 1 
HETATM 7 C C5 LBN . . . F 4 182.435 194.838 215.895 1 39.4 ? C5 LBN 401 A 1 
HETATM 8 C C6 LBN . . . F 4 179.43 197.108 231.365 1 39.4 ? C6 LBN 401 A 1 
HETATM 9 O O1 LBN . . . F 4 182.378 199.229 230.261 1 39.4 ? O1 LBN 401 A 1 
HETATM 10 C C7 LBN . . . F 4 186.929 197.564 217.54 1 39.4 ? C7 LBN 401 A 1 
HETATM 11 C C8 LBN . . . F 4 183.936 194.951 215.458 1 39.4 ? C8 LBN 401 A 1 
HETATM 12 C C9 LBN . . . F 4 180.57 196.646 232.319 1 39.4 ? C9 LBN 401 A 1 
HETATM 13 O O2 LBN . . . F 4 181.839 197.011 231.786 1 39.4 ? O2 LBN 401 A 1 
HETATM 14 C C10 LBN . . . F 4 187.606 197.775 216.146 1 39.4 ? C10 LBN 401 A 1 
HETATM 15 C C11 LBN . . . F 4 184.008 195.234 213.938 1 39.4 ? C11 LBN 401 A 1 
HETATM 16 C C12 LBN . . . F 4 178.195 197.605 233.385 1 39.4 ? C12 LBN 401 A 1 
HETATM 17 O O3 LBN . . . F 4 183.668 198.722 232.46 1 39.4 ? O3 LBN 401 A 1 
HETATM 18 C C13 LBN . . . F 4 188.793 198.783 216.285 1 39.4 ? C13 LBN 401 A 1 
HETATM 19 C C14 LBN . . . F 4 185.491 195.387 213.505 1 39.4 ? C14 LBN 401 A 1 
HETATM 20 C C15 LBN . . . F 4 177.705 195.604 232.147 1 39.4 ? C15 LBN 401 A 1 
HETATM 21 O O4 LBN . . . F 4 181.31 199.412 232.64 1 39.4 ? O4 LBN 401 A 1 
HETATM 22 C C16 LBN . . . F 4 189.057 199.46 214.908 1 39.4 ? C16 LBN 401 A 1 
HETATM 23 C C17 LBN . . . F 4 185.856 194.275 212.501 1 39.4 ? C17 LBN 401 A 1 
HETATM 24 C C18 LBN . . . F 4 177.117 197.763 231.258 1 39.4 ? C18 LBN 401 A 1 
HETATM 25 C C19 LBN . . . F 4 190.521 199.955 214.847 1 39.4 ? C19 LBN 401 A 1 
HETATM 26 C C20 LBN . . . F 4 187.217 194.589 211.859 1 39.4 ? C20 LBN 401 A 1 
HETATM 27 C C21 LBN . . . F 4 190.84 200.434 213.419 1 39.4 ? C21 LBN 401 A 1 
HETATM 28 C C22 LBN . . . F 4 187.323 193.873 210.509 1 39.4 ? C22 LBN 401 A 1 
HETATM 29 C C23 LBN . . . F 4 188.329 194.605 209.621 1 39.4 ? C23 LBN 401 A 1 
HETATM 30 C C24 LBN . . . F 4 189.75 194.211 210.016 1 39.4 ? C24 LBN 401 A 1 
HETATM 31 C C25 LBN . . . F 4 184.035 201.619 226.643 1 39.4 ? C25 LBN 401 A 1 
HETATM 32 O O5 LBN . . . F 4 182.673 201.209 226.814 1 39.4 ? O5 LBN 401 A 1 
HETATM 33 C C26 LBN . . . F 4 184.573 201.96 225.212 1 39.4 ? C26 LBN 401 A 1 
HETATM 34 O O6 LBN . . . F 4 184.756 201.695 227.584 1 39.4 ? O6 LBN 401 A 1 
HETATM 35 C C27 LBN . . . F 4 184.83 200.628 224.435 1 39.4 ? C27 LBN 401 A 1 
HETATM 36 C C28 LBN . . . F 4 186.375 200.355 224.339 1 39.4 ? C28 LBN 401 A 1 
HETATM 37 C C29 LBN . . . F 4 186.616 198.876 223.859 1 39.4 ? C29 LBN 401 A 1 
HETATM 38 C C30 LBN . . . F 4 187.583 198.867 222.625 1 39.4 ? C30 LBN 401 A 1 
HETATM 39 C C31 LBN . . . F 4 187.36 197.555 221.794 1 39.4 ? C31 LBN 401 A 1 
HETATM 40 C C32 LBN . . . F 4 187.634 197.854 220.276 1 39.4 ? C32 LBN 401 A 1 
HETATM 41 C C33 LBN . . . F 4 186.54 198.845 219.745 1 39.4 ? C33 LBN 401 A 1 
HETATM 42 C C34 LBN . . . F 4 181.46 197.749 226.149 1 39.4 ? C34 LBN 401 A 1 
HETATM 43 O O7 LBN . . . F 4 182.317 198.617 226.841 1 39.4 ? O7 LBN 401 A 1 
HETATM 44 C C35 LBN . . . F 4 182.035 196.763 225.119 1 39.4 ? C35 LBN 401 A 1 
HETATM 45 O O8 LBN . . . F 4 180.296 197.769 226.362 1 39.4 ? O8 LBN 401 A 1 
HETATM 46 C C36 LBN . . . F 4 182.427 197.508 223.83 1 39.4 ? C36 LBN 401 A 1 
HETATM 47 C C37 LBN . . . F 4 181.54 197.014 222.661 1 39.4 ? C37 LBN 401 A 1 
HETATM 48 C C38 LBN . . . F 4 182.389 196.155 221.682 1 39.4 ? C38 LBN 401 A 1 
HETATM 49 C C39 LBN . . . F 4 182.198 196.682 220.229 1 39.4 ? C39 LBN 401 A 1 
HETATM 50 C C40 LBN . . . F 4 183.067 195.842 219.24 1 39.4 ? C40 LBN 401 A 1 
HETATM 51 C C41 LBN . . . F 4 182.925 196.428 217.801 1 39.4 ? C41 LBN 401 A 1 
HETATM 52 C C42 LBN . . . F 4 181.977 195.506 216.952 1 39.4 ? C42 LBN 401 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           52 
#